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The map label for this gene is cph2 [H]

Identifier: 17548104

GI number: 17548104

Start: 3652131

End: 3653342

Strand: Direct

Name: cph2 [H]

Synonym: RSc3387

Alternate gene names: 17548104

Gene position: 3652131-3653342 (Clockwise)

Preceding gene: 17548103

Following gene: 17548105

Centisome position: 98.27

GC content: 69.8

Gene sequence:

>1212_bases
ATGGAAGGTTTCGCGCAGCTCGCGGTACTGGTGGTCGACGGTCAGCTTGGGCAGCGTACCGCTGCCAGGCAGGTGCTGCA
GACCCTGGGTGTGCAGCAGATCCTGGCCGCCGGTGACGGACGCGAGGCGCTGGACCTGCTGCACTTGTGCCAGTTCGACC
TGGTGCTGTGCGACATCGCCATGCCGGGGATGGACGGCTCGGCGCTGATGCAACGGATGCGGTTGCACGACGGTCGCCCG
CCCGCGCGGCAGGCGCCGGTCTGGGCGTGGGTCGGCACGCAGGAAGGACCGCTGCTCGAATCGCATATCGGCCTGACCGA
AGCCATGGGGCTGGCGCAGGCGCATGGCCTGTGCGGGCCGCTGCGCCCCGAGCATGTGCTGCCGTTGCTGTACGAAGCGG
CCACGCGCGACGGTGAAGTTACGCCGCTGAGCGCGGTCCGGCCGCCGGCCTTCTCGGACGATGAGCTTGCCGCCCTGGTG
CACGATACGCCCGGGCAGATCGAAGTGGTGCTGCAGCCTCAGCATGATCTCGTCACGGATCGCGTGGTTGGCGCGGAGGC
CCTGTGCCGATGGCTGCATCCCGTCCATGGCCGTGTCTTGCCGACAGCCTTCGTGCCGCGCCTGGAAGCGCTGGGCCTGG
CCGACGCGCTGTTCTTCCATGTGCTTGGGCACTGCGCGCGCGTCCAGCGTGCCCTGGCGGCGCAGTCCATCGCGCTGCCC
ATCGGCGTGAATGCCTCGGCACAGACCCTGAGTCGCGAGGGTGCCATCGATCGCATCGCCACCGCGATGCGCGACGCGGC
CATCGACCCCGCGCGCATCGTCATTGAGCTGAGCGACGAGGCACCGGTGGCGGAGACGGCCCGGCTCGCGGTGGCGCTGC
ACCGCCTGCGGCAATTCGGCCATGGCCTGGCGATCGACGATTTCGGCGTGGGGTTTGCCGTGCTCAAGCTGCTGGCCGAT
CTGCCCTTCACCATCCTCAAGATCGACCGCGCGTTGACCGAGGCGGTCAGTCTGTCCAGCCAGCGCGGCATCGTCTGCCG
CACGATGATCGAACTGGCCGGCGCGCTGAGGCTCCAGTGCGTGGCCGAAGGCGTGGAGACCGATGCGCAGCGGCGGGCCC
TGCTCGCGCTGGGGTGTGCCACCGGCCAGGGGTACCTGTGGGCCGCACCGCTGTCGACGACGGCGTTCCTGGCGCGGGTG
CAGGCCGATTGA

Upstream 100 bases:

>100_bases
GCCGTTGCCGGTGCTTCAATGACTGCACACGGCACAGGCATGACAGCGCATGCGGATGTGCGCCGCGTACGTCCTGCAAA
CGACAACCGGGAAATGGCCG

Downstream 100 bases:

>100_bases
GGGTGATGGCCCGGTCTCCAGGGCCGGATGGGCGCCGCGCTTGTGCCGGCATGCCACGCCGGCGGCAAAGTCGGACGATT
CCGATGTCATGGGACGCCAG

Product: two-component response regulator transcription regulator protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MEGFAQLAVLVVDGQLGQRTAARQVLQTLGVQQILAAGDGREALDLLHLCQFDLVLCDIAMPGMDGSALMQRMRLHDGRP
PARQAPVWAWVGTQEGPLLESHIGLTEAMGLAQAHGLCGPLRPEHVLPLLYEAATRDGEVTPLSAVRPPAFSDDELAALV
HDTPGQIEVVLQPQHDLVTDRVVGAEALCRWLHPVHGRVLPTAFVPRLEALGLADALFFHVLGHCARVQRALAAQSIALP
IGVNASAQTLSREGAIDRIATAMRDAAIDPARIVIELSDEAPVAETARLAVALHRLRQFGHGLAIDDFGVGFAVLKLLAD
LPFTILKIDRALTEAVSLSSQRGIVCRTMIELAGALRLQCVAEGVETDAQRRALLALGCATGQGYLWAAPLSTTAFLARV
QAD

Sequences:

>Translated_403_residues
MEGFAQLAVLVVDGQLGQRTAARQVLQTLGVQQILAAGDGREALDLLHLCQFDLVLCDIAMPGMDGSALMQRMRLHDGRP
PARQAPVWAWVGTQEGPLLESHIGLTEAMGLAQAHGLCGPLRPEHVLPLLYEAATRDGEVTPLSAVRPPAFSDDELAALV
HDTPGQIEVVLQPQHDLVTDRVVGAEALCRWLHPVHGRVLPTAFVPRLEALGLADALFFHVLGHCARVQRALAAQSIALP
IGVNASAQTLSREGAIDRIATAMRDAAIDPARIVIELSDEAPVAETARLAVALHRLRQFGHGLAIDDFGVGFAVLKLLAD
LPFTILKIDRALTEAVSLSSQRGIVCRTMIELAGALRLQCVAEGVETDAQRRALLALGCATGQGYLWAAPLSTTAFLARV
QAD
>Mature_403_residues
MEGFAQLAVLVVDGQLGQRTAARQVLQTLGVQQILAAGDGREALDLLHLCQFDLVLCDIAMPGMDGSALMQRMRLHDGRP
PARQAPVWAWVGTQEGPLLESHIGLTEAMGLAQAHGLCGPLRPEHVLPLLYEAATRDGEVTPLSAVRPPAFSDDELAALV
HDTPGQIEVVLQPQHDLVTDRVVGAEALCRWLHPVHGRVLPTAFVPRLEALGLADALFFHVLGHCARVQRALAAQSIALP
IGVNASAQTLSREGAIDRIATAMRDAAIDPARIVIELSDEAPVAETARLAVALHRLRQFGHGLAIDDFGVGFAVLKLLAD
LPFTILKIDRALTEAVSLSSQRGIVCRTMIELAGALRLQCVAEGVETDAQRRALLALGCATGQGYLWAAPLSTTAFLARV
QAD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=230, Percent_Identity=30.8695652173913, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081743, Length=229, Percent_Identity=31.0043668122271, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI226510982, Length=234, Percent_Identity=32.9059829059829, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=30.3418803418803, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=28.4518828451883, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1786507, Length=233, Percent_Identity=29.1845493562232, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=30.1724137931034, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081845, Length=232, Percent_Identity=29.3103448275862, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788502, Length=235, Percent_Identity=31.9148936170213, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787541, Length=234, Percent_Identity=29.0598290598291, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87082096, Length=194, Percent_Identity=27.8350515463918, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788849, Length=190, Percent_Identity=24.7368421052632, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 43008; Mature: 43008

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGFAQLAVLVVDGQLGQRTAARQVLQTLGVQQILAAGDGREALDLLHLCQFDLVLCDIA
CCCHHEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
MPGMDGSALMQRMRLHDGRPPARQAPVWAWVGTQEGPLLESHIGLTEAMGLAQAHGLCGP
CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHCCCCCC
LRPEHVLPLLYEAATRDGEVTPLSAVRPPAFSDDELAALVHDTPGQIEVVLQPQHDLVTD
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCEEEEECCCHHHHHH
RVVGAEALCRWLHPVHGRVLPTAFVPRLEALGLADALFFHVLGHCARVQRALAAQSIALP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
IGVNASAQTLSREGAIDRIATAMRDAAIDPARIVIELSDEAPVAETARLAVALHRLRQFG
ECCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
HGLAIDDFGVGFAVLKLLADLPFTILKIDRALTEAVSLSSQRGIVCRTMIELAGALRLQC
CCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VAEGVETDAQRRALLALGCATGQGYLWAAPLSTTAFLARVQAD
HHHHHCCHHHHHHHHEEEEECCCCEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure
MEGFAQLAVLVVDGQLGQRTAARQVLQTLGVQQILAAGDGREALDLLHLCQFDLVLCDIA
CCCHHEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
MPGMDGSALMQRMRLHDGRPPARQAPVWAWVGTQEGPLLESHIGLTEAMGLAQAHGLCGP
CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHCCCCCC
LRPEHVLPLLYEAATRDGEVTPLSAVRPPAFSDDELAALVHDTPGQIEVVLQPQHDLVTD
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCEEEEECCCHHHHHH
RVVGAEALCRWLHPVHGRVLPTAFVPRLEALGLADALFFHVLGHCARVQRALAAQSIALP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
IGVNASAQTLSREGAIDRIATAMRDAAIDPARIVIELSDEAPVAETARLAVALHRLRQFG
ECCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
HGLAIDDFGVGFAVLKLLADLPFTILKIDRALTEAVSLSSQRGIVCRTMIELAGALRLQC
CCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VAEGVETDAQRRALLALGCATGQGYLWAAPLSTTAFLARVQAD
HHHHHCCHHHHHHHHEEEEECCCCEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]