| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is copA [H]
Identifier: 17548065
GI number: 17548065
Start: 3608579
End: 3610825
Strand: Reverse
Name: copA [H]
Synonym: RSc3348
Alternate gene names: 17548065
Gene position: 3610825-3608579 (Counterclockwise)
Preceding gene: 17548067
Following gene: 17548064
Centisome position: 97.16
GC content: 74.45
Gene sequence:
>2247_bases ATGACTGCCGCCAGCCTTGCCGATGCTGCTTCGCTCGACCTGGAAATCGAGGGGATGACCTGTGCCGCCTGCGCCGGCCG GGTCGAACGCGCGCTGCGCGCGGTGCCCGGGGTGACGCAGGCCAGTGTCAATCTCGCCACCGAACGCGCGCGCGTCCAGC GGGGCGACGCCGTCAGCGGCGATGCGCTGGTCGCGGCGGTGGTGGCGGCCGGCTATGAAGCGCGCGTCGCGTCGGACGAA ACGGCGGCCGAGCCGCCCGGCGCCGCGCCGGGTTTCTGGGACGGCCCCGGCCCCGTGTGGGTATCGGCGGCATTGTCGCT GCCGCTGGTGGCACCGATGGTGGCCGGCTGGCTGGGGGCCGGGTGGATGCTGCCGGCGTGGCTGCAATGGCTGCTGGCGA CGCCGGTGCAGTGCGTGATCGGCGCGCGTTTCTACCGGGCCGGCTGGAAGGCGCTGCGCGCGGGGGCCGGCAACATGGAC CTGCTGGTGGCGCTGGGCACCTCCGCGGCCTATGGGCTGTCGCTGTGGCTGTGGTGGCGTGCCGATGCAGGCGACATGCC GCACCTGTACTTCGAGAGCGCCGCGGTCGTCATCACGCTGGTGCGGCTGGGCAAGTGGCTGGAGGCGCGCGCCAAGCGGC AGACCGCCCAGGCCATCCGCGCGCTGCAGGCGCTGCGGCCCGACACCGCCCGCGTGCGCGGTGCCGACGGCACGCTGCGG GACGTGCCCATCGCCCGGGTTCGCGTGGGCGATGCGGTGTCGGTGCGCGCGGGCGAGCGCATTGCCGTCGACGGCACGGT GGTGGAGGGCGCTAGCCATGTCGATCAGTCGATGCTGACCGGTGAGAGCCTGCCCGTGCCGAAGCGCGCGGGTGACCACG TGACGGCCGGCGCCATCGCCACCGACGGCGTGCTGCTGGTGCGCACCACGGCCATCGGCGCGGACACCATGCTCTCGCGC ATCATCCGCCTGGTCGAGGATGCGCAGGCCGCCAAGCCGCCGATCCAGCAGCTGGTGGACCGTGTCAGCGCGATCTTCGT GCCGGCCGTGCTGGTGGCCGCGCTGGTGACGCTGGCCGGCTGGATGATCGCGGGGGCCGGGTGGGAGAGCGCCATCGTCA ATGCGGTGGCGGTGCTGGTGATCGCCTGTCCGTGCGCGCTGGGGCTGGCGACGCCGTCGGCCGTCATGGCCGGGACCGGG GCCGGCGCGCGGCGCGGCATCCTGATCGCCGATGCGCAGGCGCTGGAGCGCGCGCAGCAGGTGGACTTCGTGGTGTTCGA CAAGACCGGCACGCTGACGCTCGGCCAGCCGCGCGTGGTGGCGGTGGAAGCGGCGCCGGGCATCGACGCGGACGCCGTGC TCGACCAGCTCGCCGCGCTGCAGGCCGAGCACACGCACCCGCTGGCGCAGGCCACGCGCGACCATGCATCGGCGCGCGGC CGTGGTGTCGCGCCGGCACAATCGCCCGAAGTCCTGGCCGGCCGGGGCGTGCGCGGTGTCGTGGACGGCGCGGTGCTGGC GCTCGGCAATGCGCGCTGGATGGACGAGCTGCAACTCGATCGCACCCGCCTGCAGGCACGTGCCGATGCGCTGGAGGCGC AGGGCCAGACCGTCTCCTGGCTGGCGCGGGCCGAAGCGGGCGGCCCGGCGCAGCTGCGCGGCCTGATTGCGTTCGGCGAT GCGCTCAAGCCGGGGGCGCGGGAGGCGGTGGCCGAACTGCGCCGCCGCGGCATCCGCACCGCGCTGGTGACGGGCGACAA CGCCGGCGCCGCGCGCGGCGTGGCCGAGGCGCTCGGCATCGAGACGGTGGCCGCGCAGGTGCTGCCGCAGGACAAGGCCG CGCGGGTGACGGCATGGCAGCGCGGCGGCCACGTGGTGGCGATGGTCGGCGACGGCATCAACGACGCGCCCGCGCTGGCC GCGGCCGATGTCGGCATCGCCATGGCCACCGGCACCGATGTCGCCATGCAGGCCGCCGGCATCACGCTGATGCGCGGCGA GCCGCGCCTGGTGCCGGCCGCGCTCGACCTGTCGCAGCGCACGGTGGCCAAGATCCGCCAGAACCTGTTCTGGGCGTTCG TCTACAACGTGGTGGGGATTCCGCTGGCGGCCTTCGGGCTGCTGTCGCCCACCTTTGCCGGCGCGGCGATGGCGTTCTCC AGCGTGAGCGTCGTCACCAACGCGCTGATGCTGCGGCGCTGGCACCCGCGCTGGGAAACCGCCACCGCCGGGGGAGACCG CGCATGA
Upstream 100 bases:
>100_bases CCTTCCCACCATGGGAAACGCAAGCGTAAGATGCGCTTGACCTTCCTAATATGGGAAGGTCTAGGCTGATGCCATCTTCC ATCCATCCGACCTGTTGCCC
Downstream 100 bases:
>100_bases CCCGTGCCGACCTGAACGATGCATCGCAAGACGGCCCCGTCAACATCGGCGAGGCGGCCAGGGCCAGCGGCGTGTCGGCC AAGATGATCCGCTACTACGA
Product: cation-transporting ATPase transmembrane protein
Products: ADP; Orthophosphate. [C]
Alternate protein names: NA
Number of amino acids: Translated: 748; Mature: 747
Protein sequence:
>748_residues MTAASLADAASLDLEIEGMTCAACAGRVERALRAVPGVTQASVNLATERARVQRGDAVSGDALVAAVVAAGYEARVASDE TAAEPPGAAPGFWDGPGPVWVSAALSLPLVAPMVAGWLGAGWMLPAWLQWLLATPVQCVIGARFYRAGWKALRAGAGNMD LLVALGTSAAYGLSLWLWWRADAGDMPHLYFESAAVVITLVRLGKWLEARAKRQTAQAIRALQALRPDTARVRGADGTLR DVPIARVRVGDAVSVRAGERIAVDGTVVEGASHVDQSMLTGESLPVPKRAGDHVTAGAIATDGVLLVRTTAIGADTMLSR IIRLVEDAQAAKPPIQQLVDRVSAIFVPAVLVAALVTLAGWMIAGAGWESAIVNAVAVLVIACPCALGLATPSAVMAGTG AGARRGILIADAQALERAQQVDFVVFDKTGTLTLGQPRVVAVEAAPGIDADAVLDQLAALQAEHTHPLAQATRDHASARG RGVAPAQSPEVLAGRGVRGVVDGAVLALGNARWMDELQLDRTRLQARADALEAQGQTVSWLARAEAGGPAQLRGLIAFGD ALKPGAREAVAELRRRGIRTALVTGDNAGAARGVAEALGIETVAAQVLPQDKAARVTAWQRGGHVVAMVGDGINDAPALA AADVGIAMATGTDVAMQAAGITLMRGEPRLVPAALDLSQRTVAKIRQNLFWAFVYNVVGIPLAAFGLLSPTFAGAAMAFS SVSVVTNALMLRRWHPRWETATAGGDRA
Sequences:
>Translated_748_residues MTAASLADAASLDLEIEGMTCAACAGRVERALRAVPGVTQASVNLATERARVQRGDAVSGDALVAAVVAAGYEARVASDE TAAEPPGAAPGFWDGPGPVWVSAALSLPLVAPMVAGWLGAGWMLPAWLQWLLATPVQCVIGARFYRAGWKALRAGAGNMD LLVALGTSAAYGLSLWLWWRADAGDMPHLYFESAAVVITLVRLGKWLEARAKRQTAQAIRALQALRPDTARVRGADGTLR DVPIARVRVGDAVSVRAGERIAVDGTVVEGASHVDQSMLTGESLPVPKRAGDHVTAGAIATDGVLLVRTTAIGADTMLSR IIRLVEDAQAAKPPIQQLVDRVSAIFVPAVLVAALVTLAGWMIAGAGWESAIVNAVAVLVIACPCALGLATPSAVMAGTG AGARRGILIADAQALERAQQVDFVVFDKTGTLTLGQPRVVAVEAAPGIDADAVLDQLAALQAEHTHPLAQATRDHASARG RGVAPAQSPEVLAGRGVRGVVDGAVLALGNARWMDELQLDRTRLQARADALEAQGQTVSWLARAEAGGPAQLRGLIAFGD ALKPGAREAVAELRRRGIRTALVTGDNAGAARGVAEALGIETVAAQVLPQDKAARVTAWQRGGHVVAMVGDGINDAPALA AADVGIAMATGTDVAMQAAGITLMRGEPRLVPAALDLSQRTVAKIRQNLFWAFVYNVVGIPLAAFGLLSPTFAGAAMAFS SVSVVTNALMLRRWHPRWETATAGGDRA >Mature_747_residues TAASLADAASLDLEIEGMTCAACAGRVERALRAVPGVTQASVNLATERARVQRGDAVSGDALVAAVVAAGYEARVASDET AAEPPGAAPGFWDGPGPVWVSAALSLPLVAPMVAGWLGAGWMLPAWLQWLLATPVQCVIGARFYRAGWKALRAGAGNMDL LVALGTSAAYGLSLWLWWRADAGDMPHLYFESAAVVITLVRLGKWLEARAKRQTAQAIRALQALRPDTARVRGADGTLRD VPIARVRVGDAVSVRAGERIAVDGTVVEGASHVDQSMLTGESLPVPKRAGDHVTAGAIATDGVLLVRTTAIGADTMLSRI IRLVEDAQAAKPPIQQLVDRVSAIFVPAVLVAALVTLAGWMIAGAGWESAIVNAVAVLVIACPCALGLATPSAVMAGTGA GARRGILIADAQALERAQQVDFVVFDKTGTLTLGQPRVVAVEAAPGIDADAVLDQLAALQAEHTHPLAQATRDHASARGR GVAPAQSPEVLAGRGVRGVVDGAVLALGNARWMDELQLDRTRLQARADALEAQGQTVSWLARAEAGGPAQLRGLIAFGDA LKPGAREAVAELRRRGIRTALVTGDNAGAARGVAEALGIETVAAQVLPQDKAARVTAWQRGGHVVAMVGDGINDAPALAA ADVGIAMATGTDVAMQAAGITLMRGEPRLVPAALDLSQRTVAKIRQNLFWAFVYNVVGIPLAAFGLLSPTFAGAAMAFSS VSVVTNALMLRRWHPRWETATAGGDRA
Specific function: Involved in copper export [H]
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 HMA domains [H]
Homologues:
Organism=Homo sapiens, GI115529486, Length=817, Percent_Identity=33.5373317013464, Blast_Score=412, Evalue=1e-115, Organism=Homo sapiens, GI55743071, Length=788, Percent_Identity=34.3908629441624, Blast_Score=394, Evalue=1e-109, Organism=Homo sapiens, GI55743073, Length=546, Percent_Identity=35.7142857142857, Blast_Score=278, Evalue=1e-74, Organism=Homo sapiens, GI48762689, Length=250, Percent_Identity=26.8, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI48762691, Length=250, Percent_Identity=26.8, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI48762685, Length=250, Percent_Identity=26.8, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI48762687, Length=250, Percent_Identity=26.8, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI118498343, Length=224, Percent_Identity=29.0178571428571, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI153946397, Length=234, Percent_Identity=24.7863247863248, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI22748667, Length=264, Percent_Identity=25.3787878787879, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI1786691, Length=762, Percent_Identity=43.1758530183727, Blast_Score=479, Evalue=1e-136, Organism=Escherichia coli, GI1789879, Length=725, Percent_Identity=35.3103448275862, Blast_Score=305, Evalue=5e-84, Organism=Escherichia coli, GI1786914, Length=444, Percent_Identity=31.0810810810811, Blast_Score=160, Evalue=3e-40, Organism=Escherichia coli, GI2367363, Length=163, Percent_Identity=31.9018404907975, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17556548, Length=796, Percent_Identity=33.2914572864322, Blast_Score=352, Evalue=4e-97, Organism=Caenorhabditis elegans, GI71997262, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71997275, Length=187, Percent_Identity=32.620320855615, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI71997269, Length=187, Percent_Identity=32.620320855615, Blast_Score=79, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17559224, Length=255, Percent_Identity=25.8823529411765, Blast_Score=69, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6320475, Length=657, Percent_Identity=35.4642313546423, Blast_Score=373, Evalue=1e-104, Organism=Saccharomyces cerevisiae, GI6319772, Length=632, Percent_Identity=30.2215189873418, Blast_Score=290, Evalue=4e-79, Organism=Saccharomyces cerevisiae, GI6321430, Length=526, Percent_Identity=24.7148288973384, Blast_Score=121, Evalue=4e-28, Organism=Saccharomyces cerevisiae, GI6325221, Length=560, Percent_Identity=24.1071428571429, Blast_Score=119, Evalue=2e-27, Organism=Saccharomyces cerevisiae, GI6321271, Length=191, Percent_Identity=27.7486910994764, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI221329854, Length=515, Percent_Identity=34.5631067961165, Blast_Score=263, Evalue=2e-70, Organism=Drosophila melanogaster, GI24668708, Length=162, Percent_Identity=32.0987654320988, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI281366617, Length=162, Percent_Identity=32.0987654320988, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI24668696, Length=162, Percent_Identity=32.0987654320988, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI24668704, Length=162, Percent_Identity=32.0987654320988, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI161085803, Length=162, Percent_Identity=32.0987654320988, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI281366676, Length=229, Percent_Identity=25.764192139738, Blast_Score=73, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR006403 - InterPro: IPR001366 - InterPro: IPR006416 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000150 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00403 HMA; PF00702 Hydrolase [H]
EC number: 3.6.3.4 [C]
Molecular weight: Translated: 77350; Mature: 77219
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: PS00154 ATPASE_E1_E2 ; PS01047 HMA_1 ; PS50846 HMA_2 ; PS01229 COF_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAASLADAASLDLEIEGMTCAACAGRVERALRAVPGVTQASVNLATERARVQRGDAVSG CCCCHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC DALVAAVVAAGYEARVASDETAAEPPGAAPGFWDGPGPVWVSAALSLPLVAPMVAGWLGA HHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC GWMLPAWLQWLLATPVQCVIGARFYRAGWKALRAGAGNMDLLVALGTSAAYGLSLWLWWR CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEE ADAGDMPHLYFESAAVVITLVRLGKWLEARAKRQTAQAIRALQALRPDTARVRGADGTLR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCC DVPIARVRVGDAVSVRAGERIAVDGTVVEGASHVDQSMLTGESLPVPKRAGDHVTAGAIA CCCEEEEEECCEEEECCCCEEEECCEEECCHHHHHHHHHCCCCCCCCCCCCCCEEECCCC TDGVLLVRTTAIGADTMLSRIIRLVEDAQAAKPPIQQLVDRVSAIFVPAVLVAALVTLAG CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WMIAGAGWESAIVNAVAVLVIACPCALGLATPSAVMAGTGAGARRGILIADAQALERAQQ HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCEEEECHHHHHHHHH VDFVVFDKTGTLTLGQPRVVAVEAAPGIDADAVLDQLAALQAEHTHPLAQATRDHASARG CCEEEECCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC RGVAPAQSPEVLAGRGVRGVVDGAVLALGNARWMDELQLDRTRLQARADALEAQGQTVSW CCCCCCCCCCHHHCCCCCHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEH LARAEAGGPAQLRGLIAFGDALKPGAREAVAELRRRGIRTALVTGDNAGAARGVAEALGI HHHCCCCCHHHHHEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH ETVAAQVLPQDKAARVTAWQRGGHVVAMVGDGINDAPALAAADVGIAMATGTDVAMQAAG HHHHHHHCCCCCHHHEEEEECCCEEEEEECCCCCCCCCHHHHHCCEEEECCCHHHHHHCC ITLMRGEPRLVPAALDLSQRTVAKIRQNLFWAFVYNVVGIPLAAFGLLSPTFAGAAMAFS EEEECCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH SVSVVTNALMLRRWHPRWETATAGGDRA HHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TAASLADAASLDLEIEGMTCAACAGRVERALRAVPGVTQASVNLATERARVQRGDAVSG CCCHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC DALVAAVVAAGYEARVASDETAAEPPGAAPGFWDGPGPVWVSAALSLPLVAPMVAGWLGA HHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC GWMLPAWLQWLLATPVQCVIGARFYRAGWKALRAGAGNMDLLVALGTSAAYGLSLWLWWR CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEE ADAGDMPHLYFESAAVVITLVRLGKWLEARAKRQTAQAIRALQALRPDTARVRGADGTLR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCC DVPIARVRVGDAVSVRAGERIAVDGTVVEGASHVDQSMLTGESLPVPKRAGDHVTAGAIA CCCEEEEEECCEEEECCCCEEEECCEEECCHHHHHHHHHCCCCCCCCCCCCCCEEECCCC TDGVLLVRTTAIGADTMLSRIIRLVEDAQAAKPPIQQLVDRVSAIFVPAVLVAALVTLAG CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WMIAGAGWESAIVNAVAVLVIACPCALGLATPSAVMAGTGAGARRGILIADAQALERAQQ HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCEEEECHHHHHHHHH VDFVVFDKTGTLTLGQPRVVAVEAAPGIDADAVLDQLAALQAEHTHPLAQATRDHASARG CCEEEECCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC RGVAPAQSPEVLAGRGVRGVVDGAVLALGNARWMDELQLDRTRLQARADALEAQGQTVSW CCCCCCCCCCHHHCCCCCHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEH LARAEAGGPAQLRGLIAFGDALKPGAREAVAELRRRGIRTALVTGDNAGAARGVAEALGI HHHCCCCCHHHHHEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHH ETVAAQVLPQDKAARVTAWQRGGHVVAMVGDGINDAPALAAADVGIAMATGTDVAMQAAG HHHHHHHCCCCCHHHEEEEECCCEEEEEECCCCCCCCCHHHHHCCEEEECCCHHHHHHCC ITLMRGEPRLVPAALDLSQRTVAKIRQNLFWAFVYNVVGIPLAAFGLLSPTFAGAAMAFS EEEECCCCCEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH SVSVVTNALMLRRWHPRWETATAGGDRA HHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; H2O [C]
Specific reaction: ATP + H2O = ADP + Orthophosphate. [C]
General reaction: Phosphorous acid anhydride hydrolysis [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA