| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is vdlC [H]
Identifier: 17547928
GI number: 17547928
Start: 3471334
End: 3472140
Strand: Direct
Name: vdlC [H]
Synonym: RSc3209
Alternate gene names: 17547928
Gene position: 3471334-3472140 (Clockwise)
Preceding gene: 17547927
Following gene: 17547932
Centisome position: 93.41
GC content: 60.59
Gene sequence:
>807_bases ATGTCCAACTCCAAAGTTGTCCTCATTACCGGTGTGTCTTCGGGCATCGGCCGTGCCACCGCAGCGAAGTTTGCGTTGCG GGGCTGCCGGGTATTCGGCACCGTGCGCAACCTCGCAAAAGCTCAGCCGATACCGGGCGTTGAACTGGTCGAGATGGATA TCCGCGATCAAGCGTCGGTTCAGCAGGGAATCCAGACCCTCATCGCACAGGCCAAGCGCATCGATGTGCTGGTCAATAGT GCCGGCGTGACGCTGCTCGGCGCGACCGAAGAAACGTCGATCGCCGAAGCGCAGGCGCTGTTCGACACCAACGTGTTTGG CATCTTGCGCACCACACAAGCCGCATTGCCGCACATGCGCGCGCAACGTTCGGGAAGAATCATCAACATCAGCTCGGTGC TCGGCTTTCTGCCGGCGCCGTACATGGGCCTCTATTCGGCGTCCAAACACGCCGTGGAGGGGATGTCCGAGACGCTGGAC CACGAGGTGCGCAAGTTCGGCATCCGTGTCGTGCTTGTCGAACCCTCATTTACCAAGACCAGCCTGGATATCAATGCCCC CCATGCGGTTTCCAAGGTATCTGCCTACGACGACGAGCGCAGCGTCGTTTCGCAGGCGATTCAAAAAAGTGTCCAAAAAG CACCGGAACCCGATGGTGTCGCGAGCACGGTCGTCGATGCCGCCCTAGGTGCGTGGAAGATGCGCCGTACACCCAAAGGC GAGGCATCCCTTCTGGGCAAGCTGCGCCGTTTCATGCCGGCAGGCCCGGTCGATGCAAGTCTGCGGAAGACGTTCGGGCT CTCCTGA
Upstream 100 bases:
>100_bases GCAAATAGTCCCCCCGCGAATGAGGCTGCGCATCCAGCGTGGCTCATCGCAACAACCGATTTACCGCCGCTCCAATTCAC CCATACAGAAAGAAACTGCC
Downstream 100 bases:
>100_bases GAGCCCGTTTGAAAATTCCCCGCGAGGGTGATGTAAAGGCGGGATGTGGAAAAAAGAACATCGAGAACGCGAGGCGAAGC TGGCTCGCAAGACCAAGCGT
Product: short chain dehydrogenase
Products: 2,3-Dihydroxybenzoate; H+; Nicotinamide adenine dinucleotide - reduced [C]
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MSNSKVVLITGVSSGIGRATAAKFALRGCRVFGTVRNLAKAQPIPGVELVEMDIRDQASVQQGIQTLIAQAKRIDVLVNS AGVTLLGATEETSIAEAQALFDTNVFGILRTTQAALPHMRAQRSGRIINISSVLGFLPAPYMGLYSASKHAVEGMSETLD HEVRKFGIRVVLVEPSFTKTSLDINAPHAVSKVSAYDDERSVVSQAIQKSVQKAPEPDGVASTVVDAALGAWKMRRTPKG EASLLGKLRRFMPAGPVDASLRKTFGLS
Sequences:
>Translated_268_residues MSNSKVVLITGVSSGIGRATAAKFALRGCRVFGTVRNLAKAQPIPGVELVEMDIRDQASVQQGIQTLIAQAKRIDVLVNS AGVTLLGATEETSIAEAQALFDTNVFGILRTTQAALPHMRAQRSGRIINISSVLGFLPAPYMGLYSASKHAVEGMSETLD HEVRKFGIRVVLVEPSFTKTSLDINAPHAVSKVSAYDDERSVVSQAIQKSVQKAPEPDGVASTVVDAALGAWKMRRTPKG EASLLGKLRRFMPAGPVDASLRKTFGLS >Mature_267_residues SNSKVVLITGVSSGIGRATAAKFALRGCRVFGTVRNLAKAQPIPGVELVEMDIRDQASVQQGIQTLIAQAKRIDVLVNSA GVTLLGATEETSIAEAQALFDTNVFGILRTTQAALPHMRAQRSGRIINISSVLGFLPAPYMGLYSASKHAVEGMSETLDH EVRKFGIRVVLVEPSFTKTSLDINAPHAVSKVSAYDDERSVVSQAIQKSVQKAPEPDGVASTVVDAALGAWKMRRTPKGE ASLLGKLRRFMPAGPVDASLRKTFGLS
Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=183, Percent_Identity=36.6120218579235, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI223718074, Length=183, Percent_Identity=36.6120218579235, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=29.7435897435897, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI150247226, Length=277, Percent_Identity=28.5198555956679, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI19743808, Length=186, Percent_Identity=31.1827956989247, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI119392083, Length=287, Percent_Identity=27.5261324041812, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI40254992, Length=191, Percent_Identity=33.5078534031414, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI157739938, Length=190, Percent_Identity=27.3684210526316, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI50726952, Length=284, Percent_Identity=31.6901408450704, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI40548397, Length=187, Percent_Identity=32.0855614973262, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI214010158, Length=187, Percent_Identity=32.0855614973262, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI214010156, Length=187, Percent_Identity=32.0855614973262, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI22758144, Length=187, Percent_Identity=32.0855614973262, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI44680136, Length=206, Percent_Identity=29.6116504854369, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI44680133, Length=206, Percent_Identity=29.6116504854369, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI17738292, Length=206, Percent_Identity=29.6116504854369, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI7706318, Length=183, Percent_Identity=27.8688524590164, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=29.7435897435897, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI142976729, Length=260, Percent_Identity=26.1538461538462, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4503817, Length=187, Percent_Identity=28.8770053475936, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=30.1775147928994, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI4557649, Length=186, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI7705855, Length=193, Percent_Identity=27.979274611399, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=31.0526315789474, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI109715829, Length=237, Percent_Identity=25.3164556962025, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI210032110, Length=263, Percent_Identity=25.0950570342205, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI22507405, Length=186, Percent_Identity=27.9569892473118, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4504503, Length=189, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI59889578, Length=145, Percent_Identity=31.0344827586207, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI66933014, Length=182, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1786812, Length=180, Percent_Identity=34.4444444444444, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787335, Length=184, Percent_Identity=34.2391304347826, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI87082100, Length=209, Percent_Identity=33.0143540669856, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787820, Length=178, Percent_Identity=29.7752808988764, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786701, Length=184, Percent_Identity=34.2391304347826, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI87082160, Length=188, Percent_Identity=26.5957446808511, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=30.5263157894737, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789208, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI2367175, Length=192, Percent_Identity=32.2916666666667, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787526, Length=194, Percent_Identity=29.3814432989691, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994604, Length=215, Percent_Identity=30.6976744186047, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI71997402, Length=231, Percent_Identity=29.4372294372294, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17570069, Length=241, Percent_Identity=29.045643153527, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17544670, Length=201, Percent_Identity=30.8457711442786, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17557780, Length=275, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17508895, Length=189, Percent_Identity=30.6878306878307, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=30.3664921465969, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI115534660, Length=188, Percent_Identity=27.6595744680851, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17559104, Length=194, Percent_Identity=30.4123711340206, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17551412, Length=215, Percent_Identity=31.1627906976744, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=35.678391959799, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193210355, Length=206, Percent_Identity=28.6407766990291, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17562910, Length=194, Percent_Identity=27.8350515463918, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567345, Length=192, Percent_Identity=28.125, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=29.6875, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=27.5132275132275, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17507613, Length=195, Percent_Identity=30.2564102564103, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17562904, Length=195, Percent_Identity=29.7435897435897, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI32563809, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17538486, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17565030, Length=198, Percent_Identity=31.3131313131313, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560150, Length=193, Percent_Identity=29.5336787564767, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17563726, Length=192, Percent_Identity=30.2083333333333, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560220, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=29.0816326530612, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI72000259, Length=188, Percent_Identity=30.8510638297872, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=28.6458333333333, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562906, Length=189, Percent_Identity=28.042328042328, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=34.8717948717949, Blast_Score=99, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6322861, Length=206, Percent_Identity=28.1553398058252, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6320089, Length=202, Percent_Identity=30.1980198019802, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=31.9587628865979, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=37.5661375661376, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=34.0425531914894, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI28571526, Length=188, Percent_Identity=33.5106382978723, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI21357041, Length=188, Percent_Identity=34.5744680851064, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24580925, Length=180, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355631, Length=276, Percent_Identity=27.1739130434783, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=30.6532663316583, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI17647419, Length=226, Percent_Identity=26.1061946902655, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI116007236, Length=199, Percent_Identity=27.6381909547739, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI281364892, Length=191, Percent_Identity=32.9842931937173, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24651139, Length=189, Percent_Identity=29.6296296296296, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24639444, Length=197, Percent_Identity=31.4720812182741, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI116007238, Length=197, Percent_Identity=27.4111675126904, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI24648944, Length=193, Percent_Identity=29.0155440414508, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI21356301, Length=267, Percent_Identity=27.3408239700375, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24641388, Length=203, Percent_Identity=31.0344827586207, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24643142, Length=183, Percent_Identity=28.4153005464481, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24640442, Length=189, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24649181, Length=192, Percent_Identity=27.0833333333333, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24584752, Length=190, Percent_Identity=28.4210526315789, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI116007234, Length=199, Percent_Identity=27.1356783919598, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24581726, Length=190, Percent_Identity=26.8421052631579, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI24648693, Length=197, Percent_Identity=28.4263959390863, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI21355889, Length=197, Percent_Identity=28.4263959390863, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.3.1.28 [C]
Molecular weight: Translated: 28554; Mature: 28423
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSKVVLITGVSSGIGRATAAKFALRGCRVFGTVRNLAKAQPIPGVELVEMDIRDQASV CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH QQGIQTLIAQAKRIDVLVNSAGVTLLGATEETSIAEAQALFDTNVFGILRTTQAALPHMR HHHHHHHHHHHHHHHEEEECCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AQRSGRIINISSVLGFLPAPYMGLYSASKHAVEGMSETLDHEVRKFGIRVVLVEPSFTKT HHHCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEE SLDINAPHAVSKVSAYDDERSVVSQAIQKSVQKAPEPDGVASTVVDAALGAWKMRRTPKG EECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC EASLLGKLRRFMPAGPVDASLRKTFGLS HHHHHHHHHHHCCCCCCCHHHHHHCCCC >Mature Secondary Structure SNSKVVLITGVSSGIGRATAAKFALRGCRVFGTVRNLAKAQPIPGVELVEMDIRDQASV CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH QQGIQTLIAQAKRIDVLVNSAGVTLLGATEETSIAEAQALFDTNVFGILRTTQAALPHMR HHHHHHHHHHHHHHHEEEECCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AQRSGRIINISSVLGFLPAPYMGLYSASKHAVEGMSETLDHEVRKFGIRVVLVEPSFTKT HHHCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEE SLDINAPHAVSKVSAYDDERSVVSQAIQKSVQKAPEPDGVASTVVDAALGAWKMRRTPKG EECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC EASLLGKLRRFMPAGPVDASLRKTFGLS HHHHHHHHHHHCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 5550 [C]
Specific activity: 66
Km value (mM): 0.26 {methyl-2,3-dehydro-3-hydroxybenzoate}} 0.2 {3-oxocyclohexane-1-carboxylic} 0.3 {2,3-dihydro-2,3-dihydroxybenzoate}} [C]
Substrates: 2,3-Dihydro-2,3-dihydroxybenzoate; Nicotinamide adenine dinucleotide [C]
Specific reaction: 2,3-Dihydro-2,3-dihydroxybenzoate + Nicotinamide adenine dinucleotide <==> 2,3-Dihydroxybenzoate + H+ + Nicotinamide adenine dinucleotide - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9139899; 9252185 [H]