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The map label for this gene is cspC [H]

Identifier: 17547875

GI number: 17547875

Start: 3410931

End: 3411134

Strand: Direct

Name: cspC [H]

Synonym: RSc3156

Alternate gene names: 17547875

Gene position: 3410931-3411134 (Clockwise)

Preceding gene: 17547870

Following gene: 17547877

Centisome position: 91.78

GC content: 55.88

Gene sequence:

>204_bases
ATGGAAACCGGTACCGTAAAGTGGTTCAACGAATCGAAGGGTTTTGGCTTCATCACGCCTGACGCGGGTGGAAACGATCT
CTTCGCGCATTTCTCCGAAATTCAGGGCAGCGGCTTCAAAACGCTGCAAGAGGGCGAGAAGGTGCGTTACGTTGCTGGCG
TCGGCCAAAAGGGCCCCGCAGCCACCAAGATCGAACGGATCTGA

Upstream 100 bases:

>100_bases
TTGCCGACACGGCGCCACTTTTTTTCCTTGTTTCTTCCTTGATCGTCAGGCCTCGCCGGCGCTTTTGTTAGGCGAGAATT
ACTTTTTAAGGAATCCAAGC

Downstream 100 bases:

>100_bases
TCCCGTCCTGACGCAAGTCGAATAAAAAAGCTCCGCAATGCGGAGCTTTTTTATTGGGGGTCATTCCTACCCAAGAAAAT
GGGAGAACACAGTCCGCACG

Product: cold shock-like transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
METGTVKWFNESKGFGFITPDAGGNDLFAHFSEIQGSGFKTLQEGEKVRYVAGVGQKGPAATKIERI

Sequences:

>Translated_67_residues
METGTVKWFNESKGFGFITPDAGGNDLFAHFSEIQGSGFKTLQEGEKVRYVAGVGQKGPAATKIERI
>Mature_67_residues
METGTVKWFNESKGFGFITPDAGGNDLFAHFSEIQGSGFKTLQEGEKVRYVAGVGQKGPAATKIERI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=64.0625, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=56.9230769230769, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=60.655737704918, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=56.4516129032258, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=54.6875, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=54.8387096774194, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=56.4516129032258, Blast_Score=74, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=45.9016393442623, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7237; Mature: 7237

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGTVKWFNESKGFGFITPDAGGNDLFAHFSEIQGSGFKTLQEGEKVRYVAGVGQKGPA
CCCCCEEEECCCCCCEEECCCCCCCCHHEEHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
ATKIERI
CCEEECC
>Mature Secondary Structure
METGTVKWFNESKGFGFITPDAGGNDLFAHFSEIQGSGFKTLQEGEKVRYVAGVGQKGPA
CCCCCEEEECCCCCCEEECCCCCCCCHHEEHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
ATKIERI
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]