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The map label for this gene is cph2 [H]

Identifier: 17547862

GI number: 17547862

Start: 3392847

End: 3394226

Strand: Direct

Name: cph2 [H]

Synonym: RSc3143

Alternate gene names: 17547862

Gene position: 3392847-3394226 (Clockwise)

Preceding gene: 17547858

Following gene: 17547868

Centisome position: 91.29

GC content: 70.87

Gene sequence:

>1380_bases
ATGGACAGTTTCCTGATACAGCAGGCTACGCAGAGACAGGTGGTTGCCGCCGGAACCACCGCCCTCGTCATCGTTCTGAT
CCTGGCGACGATCGCTCCGCAGGCGGCCCATCCGCTGCCGGCCGTCAACCCGTTCATGCCGATGTGCGCGCTGACCGTGT
TCACCACGGCCGGTATCGCCGCCTTCCTGCTGGGCGCACAGTTCATCGTCACGCGGCAGCCGATGCTGGGCGCGCTGGGC
GGCGCCTACGCCTTCACCGCGCTGGCCGTGGCGCTGCAGCTGCTGATGTTTCCCGGGGTCTTTACGCCCACCGGCCTGTT
CGGCGCCCATCCGGCCAGCGCCGGCTGGATGTGGGTGTTCTGGCACGGCGGCTTCCCGTTCTTCGTGACCCTGGCCCTGC
TGGCACGGGAGCGCTTCAAGCCCGAAGCGGTGGATGCCACGCACATCGCGCGGTGGACGTGGCTGCTGGTCGGCGGGCCG
GTAGCCGTCGGGCTGCTGCTGTGCGGTCTCGTCCTCGCCGTCGACCTGCCGCCGGCGCTGGGGCCGGCGGACAGCAGCGA
GGTCATCGGCCAGGCGACCTCGCGGGTCCTGTGGGCGCTGAATGTCGTCGCGCTGCTGCTGGTGCTGGCCAGGGGGCGCC
TGCGCTCGGTGCTCGATCTGTGGCTGGCGATCGCCGCGCTGGCCTGCTTCACCGACACCAGCCTGAACCTGCTGAGCCCG
AGCCGCTTCACCCTCGGCTGGTATGTGGCCCGCATCTTCAGCATGTTCGCGCCGGGCGTGCTGGTGTGCGTGCTGGTGTG
GGAAGTCACGACGCTGTACCGCCGGCTGTTCGAAGCGCACGTCTCGCTGCAGCAGCTGTCGACGCACGACGCGCTGACCG
GCATCTACAACCGGAGCTACTTCAACGACCAGCTCCCGCGCGCGTTCGACGAGGCGCGGCGCAGGGGGCGCCCCTTCTCG
CTGGTGATGATCGATGTCGACCACTTCAAGCGCTACAACGACACCTTCGGTCATCTCAAGGGCGATGGCTGCCTGGCGGC
GGTCGCGTCCGCCCTGGAAGGCGTGATGCCCCGGCACACCGGCTTCATTGCCCGCTACGGCGGGGAGGAATTCGCCCTGG
TGTTGCCTGACGCCGGCCCGCGCGACGCGCTGCTGCTGGCCGAAAGCGCCCGCGAGGCGGTGCTGCACCTGCGCCTCGAG
GCGCCGGCCCCCTCCCGCTACGTGACCATCAGCGCGGGCTGCGCCACCGCCGCCCCCGGGTCGGCGGCCTCGCTGGACGC
CCTGGTCGCGGCCGCCGACGCGACGCTCTACCGCGCCAAGGCCGCCGGCCGCAACCTGGTCGTCCCGGCCGAAACGGCGC
CGCCGGCCCAACTGGCCTGA

Upstream 100 bases:

>100_bases
GTATCTATGATGAATGGCACGGCAGCGAACGGCCACACGCAGATCGCCATCCCAGGCGGACCGGCCGCGCATGCCACGCA
CATGACAAACCGGGGGCGGG

Downstream 100 bases:

>100_bases
GCAGGCCGGCGCCGAGGGCGGCGCACCACGCTGTGCCCCGGCGCAAAACGTCGCTATCCGGCGCGCCCCGCAGGCAGGCC
TCGCGCCGACAGCAGGTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MDSFLIQQATQRQVVAAGTTALVIVLILATIAPQAAHPLPAVNPFMPMCALTVFTTAGIAAFLLGAQFIVTRQPMLGALG
GAYAFTALAVALQLLMFPGVFTPTGLFGAHPASAGWMWVFWHGGFPFFVTLALLARERFKPEAVDATHIARWTWLLVGGP
VAVGLLLCGLVLAVDLPPALGPADSSEVIGQATSRVLWALNVVALLLVLARGRLRSVLDLWLAIAALACFTDTSLNLLSP
SRFTLGWYVARIFSMFAPGVLVCVLVWEVTTLYRRLFEAHVSLQQLSTHDALTGIYNRSYFNDQLPRAFDEARRRGRPFS
LVMIDVDHFKRYNDTFGHLKGDGCLAAVASALEGVMPRHTGFIARYGGEEFALVLPDAGPRDALLLAESAREAVLHLRLE
APAPSRYVTISAGCATAAPGSAASLDALVAAADATLYRAKAAGRNLVVPAETAPPAQLA

Sequences:

>Translated_459_residues
MDSFLIQQATQRQVVAAGTTALVIVLILATIAPQAAHPLPAVNPFMPMCALTVFTTAGIAAFLLGAQFIVTRQPMLGALG
GAYAFTALAVALQLLMFPGVFTPTGLFGAHPASAGWMWVFWHGGFPFFVTLALLARERFKPEAVDATHIARWTWLLVGGP
VAVGLLLCGLVLAVDLPPALGPADSSEVIGQATSRVLWALNVVALLLVLARGRLRSVLDLWLAIAALACFTDTSLNLLSP
SRFTLGWYVARIFSMFAPGVLVCVLVWEVTTLYRRLFEAHVSLQQLSTHDALTGIYNRSYFNDQLPRAFDEARRRGRPFS
LVMIDVDHFKRYNDTFGHLKGDGCLAAVASALEGVMPRHTGFIARYGGEEFALVLPDAGPRDALLLAESAREAVLHLRLE
APAPSRYVTISAGCATAAPGSAASLDALVAAADATLYRAKAAGRNLVVPAETAPPAQLA
>Mature_459_residues
MDSFLIQQATQRQVVAAGTTALVIVLILATIAPQAAHPLPAVNPFMPMCALTVFTTAGIAAFLLGAQFIVTRQPMLGALG
GAYAFTALAVALQLLMFPGVFTPTGLFGAHPASAGWMWVFWHGGFPFFVTLALLARERFKPEAVDATHIARWTWLLVGGP
VAVGLLLCGLVLAVDLPPALGPADSSEVIGQATSRVLWALNVVALLLVLARGRLRSVLDLWLAIAALACFTDTSLNLLSP
SRFTLGWYVARIFSMFAPGVLVCVLVWEVTTLYRRLFEAHVSLQQLSTHDALTGIYNRSYFNDQLPRAFDEARRRGRPFS
LVMIDVDHFKRYNDTFGHLKGDGCLAAVASALEGVMPRHTGFIARYGGEEFALVLPDAGPRDALLLAESAREAVLHLRLE
APAPSRYVTISAGCATAAPGSAASLDALVAAADATLYRAKAAGRNLVVPAETAPPAQLA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=300, Percent_Identity=30.3333333333333, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=37.4269005847953, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI145693134, Length=182, Percent_Identity=36.8131868131868, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87081881, Length=198, Percent_Identity=35.3535353535354, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788085, Length=466, Percent_Identity=24.8927038626609, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082007, Length=211, Percent_Identity=31.7535545023697, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87081974, Length=181, Percent_Identity=29.2817679558011, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=160, Percent_Identity=30, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=32.2981366459627, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=220, Percent_Identity=30, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=30.635838150289, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 48982; Mature: 48982

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFLIQQATQRQVVAAGTTALVIVLILATIAPQAAHPLPAVNPFMPMCALTVFTTAGIA
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AFLLGAQFIVTRQPMLGALGGAYAFTALAVALQLLMFPGVFTPTGLFGAHPASAGWMWVF
HHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
WHGGFPFFVTLALLARERFKPEAVDATHIARWTWLLVGGPVAVGLLLCGLVLAVDLPPAL
EECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCC
GPADSSEVIGQATSRVLWALNVVALLLVLARGRLRSVLDLWLAIAALACFTDTSLNLLSP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SRFTLGWYVARIFSMFAPGVLVCVLVWEVTTLYRRLFEAHVSLQQLSTHDALTGIYNRSY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNDQLPRAFDEARRRGRPFSLVMIDVDHFKRYNDTFGHLKGDGCLAAVASALEGVMPRHT
CCCCCHHHHHHHHHCCCCEEEEEEEHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCCCCC
GFIARYGGEEFALVLPDAGPRDALLLAESAREAVLHLRLEAPAPSRYVTISAGCATAAPG
CEEEEECCCEEEEEECCCCCCCHHHHHHHHHHEEEEEEEECCCCCCEEEEECCCCCCCCC
SAASLDALVAAADATLYRAKAAGRNLVVPAETAPPAQLA
CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MDSFLIQQATQRQVVAAGTTALVIVLILATIAPQAAHPLPAVNPFMPMCALTVFTTAGIA
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AFLLGAQFIVTRQPMLGALGGAYAFTALAVALQLLMFPGVFTPTGLFGAHPASAGWMWVF
HHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
WHGGFPFFVTLALLARERFKPEAVDATHIARWTWLLVGGPVAVGLLLCGLVLAVDLPPAL
EECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCCC
GPADSSEVIGQATSRVLWALNVVALLLVLARGRLRSVLDLWLAIAALACFTDTSLNLLSP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SRFTLGWYVARIFSMFAPGVLVCVLVWEVTTLYRRLFEAHVSLQQLSTHDALTGIYNRSY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNDQLPRAFDEARRRGRPFSLVMIDVDHFKRYNDTFGHLKGDGCLAAVASALEGVMPRHT
CCCCCHHHHHHHHHCCCCEEEEEEEHHHHHHHCCHHCCCCCCHHHHHHHHHHHHCCCCCC
GFIARYGGEEFALVLPDAGPRDALLLAESAREAVLHLRLEAPAPSRYVTISAGCATAAPG
CEEEEECCCEEEEEECCCCCCCHHHHHHHHHHEEEEEEEECCCCCCEEEEECCCCCCCCC
SAASLDALVAAADATLYRAKAAGRNLVVPAETAPPAQLA
CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]