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The map label for this gene is gspD [H]

Identifier: 17547833

GI number: 17547833

Start: 3350185

End: 3352602

Strand: Direct

Name: gspD [H]

Synonym: RSc3114

Alternate gene names: 17547833

Gene position: 3350185-3352602 (Clockwise)

Preceding gene: 17547832

Following gene: 17547834

Centisome position: 90.15

GC content: 69.07

Gene sequence:

>2418_bases
ATGAACGACGAGACCATGCACAACGCCTCTTCCCGACACACCGTCCGCGCCATTGTCCTGGCATGCTGCGCAACGATGGT
GGCCGGTTCGCTGCCCGTGACGCCCGCCTTTGCGGCCCCGCCCGCCAGCCAGGCGCCGGCGGCGAGCAACCCCGGCGATG
AAGTCTCGTTGAACTTCGTCAACGCTGACCTGGAGACCGTGGTCAAGGCGGTCGGCCAGGCCACCGGCAAGAACTTCATC
GTCGATCCGCGCGTCAAGGGCACCGTCAACCTCGTCACCGAGAAGCCGGTGACGCGCGCGCAGGCGCTGGAATCGCTGGG
CTCGATCCTGCGCATGCAAGGCTACGCCATCGTGGAAGGCAACGGCTTCACCAAGGTGGTGCCCGAGGCCGACGCCAAGC
TGCAGGGCTCGCCGACCAGCGTCGGCCCCGGCGGCGCGCGCGGCGGCGAGCAGGTGGTCACGCAGGTGTTCCGCCTGCAA
TACGAATCGGCCAACAACCTGGTGCCGGTGCTGCGGCCAATGATCGCGCCGAACAACACCATCACCGCCTACCCGGCCAA
CAACACGCTGGTCATCACCGACTACGCCGACAACCTGCGCCGCATCGCCCGCATCATCACCTCGATCGACAGCCCGGCGG
CCGGCGAGACCGAGCTGATTGCGCTGAAGAACGCGGTGGCCATCGACGCGGCCGCGACGCTGCAGAAGCTGCTGGACCCG
AGCGGCACGGCGGGCGGCGCGGGCGCCGGCGCGGCACTGGCCGACCCCAGCCTGCGCACCTCGGTGGTGGCCGAGCCGCG
CTCGAACAGCGTGCTGGTGCGCGCCTCGAGCGCCGCGCGCATGGCGCAAGCCAAGCAGCTGCTGGCCAAGCTGGACGTGC
CGGGCACGCGCCCGGGCAACATCTGGGTGGTGCCGCTGAAGAACGCCAACGCGGTGCAGCTGGCGACCACGCTGCGCGCC
ATCGTGGCGGCCGATGCCACGCTGTCGGCCTCGCAGTCCGGTGGCCCGGGCGGCCAGAGCGCGGCGCAGGGCGCGCAGGC
GCAGCAGCCCGCCACCACCGGCACGCAGACCAGCCAGAACACGCAGACCGGCAGCTACAGCAGCAGCTCGGGCAGCAGCA
GCGGCATGGGCAGCGGCAACTCGTCGTTCCGCGCCTCGTTCGGCCAGAGCAACCTGCCGACCACCGGCGGCATCATCCAG
GCCGACCCGGCCACCAATGCGCTGATCATCACGGCCAGCGAACCGGTGTACCGCAATCTGCGCACGGTGATCGACGACCT
CGACGCGCGCCGCGCGCAGGTCTATATCGAATCGATGATCGTCGAGGTGACCTCCGACAAGGCGTCGCAGCTGGGCATCC
AGTGGATGGTGGGCGCGGGCGGACCGAACACCTACGGCTTCGGCGGCACCAACTTCGGCAGCGGCGTGGGCAACATCCTG
AACCTGGGCGTGATCGCGGCCACGGTGGGCAGCGGCGGCATCGGCAGCACGGCCGCGCAGACCGCCCTGGGCAGCATCAC
CGGCAGCAATGTGAGCGGCCTGAACGGCGGCAACTTCGGCGTGTTCAACAAGAACACGGGCCTGGGCGCGATCCTCTCCG
CGCTGGGCTCCGACGGCTCGGTCAACGTGCTGTCGACGCCCAACCTGATCACGCTGGACAACGAAGAGGCCAAGATCCTG
ATCGGCCAGAACGTGCCGATCACCACCGGCTCGTATGCGCAGACCGGCAGTTCGGCATCCGTCACGCCGTTCCAGACATT
CGACCGCAAGGACGTGGGCATCACGCTGCGCGTCAAGCCGCAGATCACGGACGGCGGGATGGTGAAGATGCAGATCTTCC
AGGAGTCGTCGGCGGTGGTGAACGGCACGCAGAACGCGACGCAGGGCCCGACCACCAACGTGCGCTCGATCGAGACCAAC
GTGATCGCCAACGACGGCCAGGTGATCGTGCTGGGCGGCCTGCTGGAAGACAATTACCAGGACAGCGAGCAGAAGGTGCC
GGGCCTGGGCGACATTCCCGTGCTCGGGGCGCTGTTCCGCTCCGAGAGCAAGACGCGCAAGAAGACCAACCTGCTGGTGT
TCCTGCGCCCGTACATCCTGCGCACGGCCGAGGCGACCGGCGCGCTGTCGGACAACCGCTACAACTACATGCGCGATGCG
CAGCAGGGCTTCGTCTCGCCCAATGTGCTGCCGACCACCTCCGACCGCGATACGCCGGTGCTGCCGTCGCCCGAGTCGAT
GCGCCCGGCGCAGAATTACGGCGATGTTTCGGTGGTGCCCAAGGGCCAGACCGGCGTGCAGGTGCCGCCCGGCGCACCGA
TGCCGCAGGGGACCACGCGCAGCGAGCCGCGCCTGCAGAACTTCGCGCCGCCCACCTCGGGCGGGTATGACGGCAACGCG
CCGCGCAATGGCGGCTGA

Upstream 100 bases:

>100_bases
GCTGTTGATCGGGCTGCTGAGCCTGATGGGCCCGCGCGACGGCACGGGCTATCGCCTACGCTTTTGACCAGCCGGCGCAC
GCCACGCGGCGCCGGCATCC

Downstream 100 bases:

>100_bases
GACGATCCACGCGGCCGGAAAGGCGGTGAACATCATGGCAACGCAAGCTTCTTCCACTGACGCGCGCACGCTCGAGCCGC
CGTCGCCCTCGGCGGTGCGG

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 805; Mature: 805

Protein sequence:

>805_residues
MNDETMHNASSRHTVRAIVLACCATMVAGSLPVTPAFAAPPASQAPAASNPGDEVSLNFVNADLETVVKAVGQATGKNFI
VDPRVKGTVNLVTEKPVTRAQALESLGSILRMQGYAIVEGNGFTKVVPEADAKLQGSPTSVGPGGARGGEQVVTQVFRLQ
YESANNLVPVLRPMIAPNNTITAYPANNTLVITDYADNLRRIARIITSIDSPAAGETELIALKNAVAIDAAATLQKLLDP
SGTAGGAGAGAALADPSLRTSVVAEPRSNSVLVRASSAARMAQAKQLLAKLDVPGTRPGNIWVVPLKNANAVQLATTLRA
IVAADATLSASQSGGPGGQSAAQGAQAQQPATTGTQTSQNTQTGSYSSSSGSSSGMGSGNSSFRASFGQSNLPTTGGIIQ
ADPATNALIITASEPVYRNLRTVIDDLDARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNIL
NLGVIAATVGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKIL
IGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGMVKMQIFQESSAVVNGTQNATQGPTTNVRSIETN
VIANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILRTAEATGALSDNRYNYMRDA
QQGFVSPNVLPTTSDRDTPVLPSPESMRPAQNYGDVSVVPKGQTGVQVPPGAPMPQGTTRSEPRLQNFAPPTSGGYDGNA
PRNGG

Sequences:

>Translated_805_residues
MNDETMHNASSRHTVRAIVLACCATMVAGSLPVTPAFAAPPASQAPAASNPGDEVSLNFVNADLETVVKAVGQATGKNFI
VDPRVKGTVNLVTEKPVTRAQALESLGSILRMQGYAIVEGNGFTKVVPEADAKLQGSPTSVGPGGARGGEQVVTQVFRLQ
YESANNLVPVLRPMIAPNNTITAYPANNTLVITDYADNLRRIARIITSIDSPAAGETELIALKNAVAIDAAATLQKLLDP
SGTAGGAGAGAALADPSLRTSVVAEPRSNSVLVRASSAARMAQAKQLLAKLDVPGTRPGNIWVVPLKNANAVQLATTLRA
IVAADATLSASQSGGPGGQSAAQGAQAQQPATTGTQTSQNTQTGSYSSSSGSSSGMGSGNSSFRASFGQSNLPTTGGIIQ
ADPATNALIITASEPVYRNLRTVIDDLDARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNIL
NLGVIAATVGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKIL
IGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGMVKMQIFQESSAVVNGTQNATQGPTTNVRSIETN
VIANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILRTAEATGALSDNRYNYMRDA
QQGFVSPNVLPTTSDRDTPVLPSPESMRPAQNYGDVSVVPKGQTGVQVPPGAPMPQGTTRSEPRLQNFAPPTSGGYDGNA
PRNGG
>Mature_805_residues
MNDETMHNASSRHTVRAIVLACCATMVAGSLPVTPAFAAPPASQAPAASNPGDEVSLNFVNADLETVVKAVGQATGKNFI
VDPRVKGTVNLVTEKPVTRAQALESLGSILRMQGYAIVEGNGFTKVVPEADAKLQGSPTSVGPGGARGGEQVVTQVFRLQ
YESANNLVPVLRPMIAPNNTITAYPANNTLVITDYADNLRRIARIITSIDSPAAGETELIALKNAVAIDAAATLQKLLDP
SGTAGGAGAGAALADPSLRTSVVAEPRSNSVLVRASSAARMAQAKQLLAKLDVPGTRPGNIWVVPLKNANAVQLATTLRA
IVAADATLSASQSGGPGGQSAAQGAQAQQPATTGTQTSQNTQTGSYSSSSGSSSGMGSGNSSFRASFGQSNLPTTGGIIQ
ADPATNALIITASEPVYRNLRTVIDDLDARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNIL
NLGVIAATVGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPNLITLDNEEAKIL
IGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGMVKMQIFQESSAVVNGTQNATQGPTTNVRSIETN
VIANDGQVIVLGGLLEDNYQDSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILRTAEATGALSDNRYNYMRDA
QQGFVSPNVLPTTSDRDTPVLPSPESMRPAQNYGDVSVVPKGQTGVQVPPGAPMPQGTTRSEPRLQNFAPPTSGGYDGNA
PRNGG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=729, Percent_Identity=31.8244170096022, Blast_Score=292, Evalue=7e-80,
Organism=Escherichia coli, GI1789793, Length=312, Percent_Identity=22.4358974358974, Blast_Score=73, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 82714; Mature: 82714

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDETMHNASSRHTVRAIVLACCATMVAGSLPVTPAFAAPPASQAPAASNPGDEVSLNFV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
NADLETVVKAVGQATGKNFIVDPRVKGTVNLVTEKPVTRAQALESLGSILRMQGYAIVEG
CCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEC
NGFTKVVPEADAKLQGSPTSVGPGGARGGEQVVTQVFRLQYESANNLVPVLRPMIAPNNT
CCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCE
ITAYPANNTLVITDYADNLRRIARIITSIDSPAAGETELIALKNAVAIDAAATLQKLLDP
EEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCC
SGTAGGAGAGAALADPSLRTSVVAEPRSNSVLVRASSAARMAQAKQLLAKLDVPGTRPGN
CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
IWVVPLKNANAVQLATTLRAIVAADATLSASQSGGPGGQSAAQGAQAQQPATTGTQTSQN
EEEEEECCCCEEHHHHHHHHHHHCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
TQTGSYSSSSGSSSGMGSGNSSFRASFGQSNLPTTGGIIQADPATNALIITASEPVYRNL
CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHH
RTVIDDLDARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNIL
HHHHHHHHHHHHHHHHHHHHEECCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHH
NLGVIAATVGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGS
HHHHHEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCC
VNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKP
EEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEEC
QITDGGMVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNYQ
EECCCCEEEEEEEECCCCEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCEECCCCC
DSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILRTAEATGALSDNRYNYMRDA
CHHHCCCCCCCHHHHHHHHHCCHHHHHHCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHH
QQGFVSPNVLPTTSDRDTPVLPSPESMRPAQNYGDVSVVPKGQTGVQVPPGAPMPQGTTR
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
SEPRLQNFAPPTSGGYDGNAPRNGG
CCCCHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNDETMHNASSRHTVRAIVLACCATMVAGSLPVTPAFAAPPASQAPAASNPGDEVSLNFV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
NADLETVVKAVGQATGKNFIVDPRVKGTVNLVTEKPVTRAQALESLGSILRMQGYAIVEG
CCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEC
NGFTKVVPEADAKLQGSPTSVGPGGARGGEQVVTQVFRLQYESANNLVPVLRPMIAPNNT
CCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCE
ITAYPANNTLVITDYADNLRRIARIITSIDSPAAGETELIALKNAVAIDAAATLQKLLDP
EEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCC
SGTAGGAGAGAALADPSLRTSVVAEPRSNSVLVRASSAARMAQAKQLLAKLDVPGTRPGN
CCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
IWVVPLKNANAVQLATTLRAIVAADATLSASQSGGPGGQSAAQGAQAQQPATTGTQTSQN
EEEEEECCCCEEHHHHHHHHHHHCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
TQTGSYSSSSGSSSGMGSGNSSFRASFGQSNLPTTGGIIQADPATNALIITASEPVYRNL
CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCEEEEEECCHHHHHH
RTVIDDLDARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNIL
HHHHHHHHHHHHHHHHHHHHEECCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHH
NLGVIAATVGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGS
HHHHHEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCC
VNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKP
EEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEEC
QITDGGMVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNYQ
EECCCCEEEEEEEECCCCEECCCCCCCCCCCCCCEEEEEEEEECCCCEEEECCEECCCCC
DSEQKVPGLGDIPVLGALFRSESKTRKKTNLLVFLRPYILRTAEATGALSDNRYNYMRDA
CHHHCCCCCCCHHHHHHHHHCCHHHHHHCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHH
QQGFVSPNVLPTTSDRDTPVLPSPESMRPAQNYGDVSVVPKGQTGVQVPPGAPMPQGTTR
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
SEPRLQNFAPPTSGGYDGNAPRNGG
CCCCHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]