Click here to switch to the map view.

The map label for this gene is yedY

Identifier: 17547700

GI number: 17547700

Start: 3213852

End: 3214847

Strand: Reverse

Name: yedY

Synonym: RSc2981

Alternate gene names: 17547700

Gene position: 3214847-3213852 (Counterclockwise)

Preceding gene: 17547701

Following gene: 17547699

Centisome position: 86.5

GC content: 67.87

Gene sequence:

>996_bases
ATGCTGATCAAGACCGACCGCTGGCTGCGCGGTGACGACATTCCCGCCAGCGAGATCACGCCGCAGCACCTCTTCGACCA
GCGCCGCAGGCTGCTGGCCGCCGCCGCCCTGGGCGCGGCCGGCGCGGCGCTGTCGCCCTGGGCGGCGCGCCGGGCCTTCG
CCGCCAGCCCCGCGCCGGCCTGGCTGGCCGCCAAGCCCAACCCGGCCTACGCCACGGTCGAGAAGCCGACGCCGTTCGAT
GAAGTCACGACCTACAACAATTTCTACGAGTTCGGCACCGACAAGTCCGACCCGGCGCGCTACGCCGGCACGCTGCGCCC
GCACCCCTGGCAGGTCAGCGTGGAGGGCCTGGTGAAGGCGCCGAAGACCTACGACCTGGATGATCTGATGAAGATGGCGC
CGATGGAGGAGCGCATCTATCGTCTGCGCTGCGTGGAGGGCTGGTCGATGGTGATCCCGTGGGTGGGGTTCCCGCTGGCC
GAGCTGATCCGCCGGGTCGAGCCGCAGGGCAGCGCCAGGTACATCCAGTTCATCTCGCTGGCCGACAAGCGCCAGATGCC
CGGCGTCAGCAGCCCGGTGCTGGACTGGCCCTACAGCGAGGGTTTGCGGATGGACGAGGCGATGCACCCGCTCGTGCTGC
TGACCTTCGGCCTGTATGGCCAGGTGCTGCCGAACCAGAACGGCGCGCCGGTGCGCGTGATCGTGCCGTGGAAGTACGGC
TTCAAGAGCGCCAAGTCCATCGTCCGGATCCGCTTTGTCGACAAGCAGCCGCCGACCAGCTGGAACATCGCCGCGCCTAA
CGAGTACGGCTTCTATTCCAACGTGAACCCGAGCGTCGATCATCCGCGCTGGAGCCAGGCGACCGAACGCCGCATCGGCG
AGGACAAGGGCGGCTTCGGCGGCCTGTTCGCGCCCAAGCGCAAGACGCTGATGTTCAACGGCTACGACCAGGTCGCGTCG
CTGTACACCGGCATGGATCTGCGCAAGTTCTTCTGA

Upstream 100 bases:

>100_bases
GCTGAGCGCCGCCGGACATTTTTCGCCGCGCGCTGTCAGGTCGGCGGCGCGGGCGCGACCAACGCACATGGGGCCGCCCC
AACGCACAACGAGGACCATC

Downstream 100 bases:

>100_bases
GGACGCACCGTGAAGATGCTGCCCTCGATGCTGCCCCCCAAATCGCTGCGCGCCGTCAGGATCGCGGTGTGGCTGCTGGC
GCTGGTGCCGTTCCTGCGGC

Product: sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MLIKTDRWLRGDDIPASEITPQHLFDQRRRLLAAAALGAAGAALSPWAARRAFAASPAPAWLAAKPNPAYATVEKPTPFD
EVTTYNNFYEFGTDKSDPARYAGTLRPHPWQVSVEGLVKAPKTYDLDDLMKMAPMEERIYRLRCVEGWSMVIPWVGFPLA
ELIRRVEPQGSARYIQFISLADKRQMPGVSSPVLDWPYSEGLRMDEAMHPLVLLTFGLYGQVLPNQNGAPVRVIVPWKYG
FKSAKSIVRIRFVDKQPPTSWNIAAPNEYGFYSNVNPSVDHPRWSQATERRIGEDKGGFGGLFAPKRKTLMFNGYDQVAS
LYTGMDLRKFF

Sequences:

>Translated_331_residues
MLIKTDRWLRGDDIPASEITPQHLFDQRRRLLAAAALGAAGAALSPWAARRAFAASPAPAWLAAKPNPAYATVEKPTPFD
EVTTYNNFYEFGTDKSDPARYAGTLRPHPWQVSVEGLVKAPKTYDLDDLMKMAPMEERIYRLRCVEGWSMVIPWVGFPLA
ELIRRVEPQGSARYIQFISLADKRQMPGVSSPVLDWPYSEGLRMDEAMHPLVLLTFGLYGQVLPNQNGAPVRVIVPWKYG
FKSAKSIVRIRFVDKQPPTSWNIAAPNEYGFYSNVNPSVDHPRWSQATERRIGEDKGGFGGLFAPKRKTLMFNGYDQVAS
LYTGMDLRKFF
>Mature_331_residues
MLIKTDRWLRGDDIPASEITPQHLFDQRRRLLAAAALGAAGAALSPWAARRAFAASPAPAWLAAKPNPAYATVEKPTPFD
EVTTYNNFYEFGTDKSDPARYAGTLRPHPWQVSVEGLVKAPKTYDLDDLMKMAPMEERIYRLRCVEGWSMVIPWVGFPLA
ELIRRVEPQGSARYIQFISLADKRQMPGVSSPVLDWPYSEGLRMDEAMHPLVLLTFGLYGQVLPNQNGAPVRVIVPWKYG
FKSAKSIVRIRFVDKQPPTSWNIAAPNEYGFYSNVNPSVDHPRWSQATERRIGEDKGGFGGLFAPKRKTLMFNGYDQVAS
LYTGMDLRKFF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family

Homologues:

Organism=Escherichia coli, GI1788282, Length=345, Percent_Identity=51.8840579710145, Blast_Score=326, Evalue=2e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEDY_RALSO (Q8XV50)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_521102.1
- ProteinModelPortal:   Q8XV50
- SMR:   Q8XV50
- GeneID:   1221835
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc2981
- NMPDR:   fig|267608.1.peg.2981
- HOGENOM:   HBG287041
- OMA:   HYNNFYE
- ProtClustDB:   PRK05363
- BioCyc:   RSOL267608:RSC2981-MONOMER
- HAMAP:   MF_01206
- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867
- Gene3D:   G3DSA:3.90.420.10

Pfam domain/function: PF00174 Oxidored_molyb; SSF56524 Oxidored_molyb

EC number: NA

Molecular weight: Translated: 37302; Mature: 37302

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS51318 TAT

Important sites: BINDING 86-86 BINDING 179-179 BINDING 227-227 BINDING 232-232

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKTDRWLRGDDIPASEITPQHLFDQRRRLLAAAALGAAGAALSPWAARRAFAASPAPA
CEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
WLAAKPNPAYATVEKPTPFDEVTTYNNFYEFGTDKSDPARYAGTLRPHPWQVSVEGLVKA
EEECCCCCCEEEECCCCCHHHHHCCCCHHCCCCCCCCCHHHCCCCCCCCCEEEHHHHHCC
PKTYDLDDLMKMAPMEERIYRLRCVEGWSMVIPWVGFPLAELIRRVEPQGSARYIQFISL
CCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCHHEEHHHHH
ADKRQMPGVSSPVLDWPYSEGLRMDEAMHPLVLLTFGLYGQVLPNQNGAPVRVIVPWKYG
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
FKSAKSIVRIRFVDKQPPTSWNIAAPNEYGFYSNVNPSVDHPRWSQATERRIGEDKGGFG
CHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
GLFAPKRKTLMFNGYDQVASLYTGMDLRKFF
CCCCCCCCEEEECCHHHHHHHHHCCHHHHCC
>Mature Secondary Structure
MLIKTDRWLRGDDIPASEITPQHLFDQRRRLLAAAALGAAGAALSPWAARRAFAASPAPA
CEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
WLAAKPNPAYATVEKPTPFDEVTTYNNFYEFGTDKSDPARYAGTLRPHPWQVSVEGLVKA
EEECCCCCCEEEECCCCCHHHHHCCCCHHCCCCCCCCCHHHCCCCCCCCCEEEHHHHHCC
PKTYDLDDLMKMAPMEERIYRLRCVEGWSMVIPWVGFPLAELIRRVEPQGSARYIQFISL
CCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCHHEEHHHHH
ADKRQMPGVSSPVLDWPYSEGLRMDEAMHPLVLLTFGLYGQVLPNQNGAPVRVIVPWKYG
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
FKSAKSIVRIRFVDKQPPTSWNIAAPNEYGFYSNVNPSVDHPRWSQATERRIGEDKGGFG
CHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
GLFAPKRKTLMFNGYDQVASLYTGMDLRKFF
CCCCCCCCEEEECCHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11823852