| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17547656
Identifier: 17547656
GI number: 17547656
Start: 3168672
End: 3169769
Strand: Direct
Name: 17547656
Synonym: RSc2937
Alternate gene names: NA
Gene position: 3168672-3169769 (Clockwise)
Preceding gene: 17547655
Following gene: 17547657
Centisome position: 85.26
GC content: 63.48
Gene sequence:
>1098_bases ATGCTTCGTGGTCACTTTGCGCCTGCGCGCGCCGCAGTCACTGCTGCCGCCCTCACCTTGGGCACCGCTGCCTTCGCTCA AGTCCCCGCCGGCTACCCGGCCAGCTACGCCGACACCATCGCCGCCGCCAAGAAGGAAGGCAAGGTCGTGGTTTACGCGA CCACCGATACCAAGGCGGCCGATCCGCTGATCAAGGATTTCGAGTCGCTGTATCCGGGCGTGAAGGTCGAATACAACGAC ATGAACAGCAGTGAGCTGTACAACCGCTTCATCAGCGAGCAGGCCGCAGGCGGCGCCTCGGCCGACATGATGTGGAACTC GTCGATGGATTCGCAGCTCAAGCTGGCGCAGACCTACGCGCTGACGTACCAGTCGCCCGAAGCGGCCAGCCTGCCGAAGT GGGCCGTCTACAAGGGCCTGGCCTACGGCACGACGTACGAGCCGGCCGTGTTCCTCTACAACAAGCGCCTGGTGAAGGAC ACGGAAGTGCCGCAGACGCATGCCGACTTCGCCAAGCTGGTCGCCAGCCAGCCGGAGCGCTTCAAGAACAAGGTCACGAC CTACGACATCGAAAAGTCCGCCGTGGGCTTCATGATGGCCGCGCAGGACAACCAGGATTCGCCGCAGTACCTCGATTTCA TCAAGGCCGTCGGCCCGAACCTGGTGCTGCAGTCCTCCACCGGCACGATGATGGAGCGCGTGGCCTCGGGCGAGAACCTG CTGGCGTACAACATCCTCGGTTCGTATGCGATGGCGCGCGCCAAGAAGGATCCGTCGATCGGTATCGTCTATCCGAAGGA CTACACGCTGGTGGTCTCGCGCGTGGCGATGATCGCCAAAAAGGCGCAGCATCCGAACGCGGCCAAGCTGTGGCTGGACT ACATCCTGTCCAAGCGCGGCCAGGACATCCTCGCCAACAAGTCGGACCTGCACTCGCTGCGTGACGACGTGACGGGCGAA GCCACCGCCGCCGGCCTGAAGCAGATCCTGGGCCAGTCCATCAAGCCGATCCCGGTGGACGAATCCGTGCTGACCTTCCT CGAACCGAAGAAGCGCCTGGATTTCATCAAGCAATGGCGCACCGCCGCCGGCCGCTGA
Upstream 100 bases:
>100_bases GCGATTTCTATAATCCGCCGCACCTGGGGTCATCTGTACAGAGCCGCGCAAGAAAAAGCGGCCGACTCCATGCCATCACA AGCAAACCTGGAGACAACCC
Downstream 100 bases:
>100_bases TGCGCGCGCCGACACTCTTCGCCTGACCGACCATCCGGCGCCCGCACCTTTGCCGGGCGGGGCCGGGATCCACCTGGAGG CACTATGCGTTCCCTGACGC
Product: periplasmic IRON-binding signal peptide protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MLRGHFAPARAAVTAAALTLGTAAFAQVPAGYPASYADTIAAAKKEGKVVVYATTDTKAADPLIKDFESLYPGVKVEYND MNSSELYNRFISEQAAGGASADMMWNSSMDSQLKLAQTYALTYQSPEAASLPKWAVYKGLAYGTTYEPAVFLYNKRLVKD TEVPQTHADFAKLVASQPERFKNKVTTYDIEKSAVGFMMAAQDNQDSPQYLDFIKAVGPNLVLQSSTGTMMERVASGENL LAYNILGSYAMARAKKDPSIGIVYPKDYTLVVSRVAMIAKKAQHPNAAKLWLDYILSKRGQDILANKSDLHSLRDDVTGE ATAAGLKQILGQSIKPIPVDESVLTFLEPKKRLDFIKQWRTAAGR
Sequences:
>Translated_365_residues MLRGHFAPARAAVTAAALTLGTAAFAQVPAGYPASYADTIAAAKKEGKVVVYATTDTKAADPLIKDFESLYPGVKVEYND MNSSELYNRFISEQAAGGASADMMWNSSMDSQLKLAQTYALTYQSPEAASLPKWAVYKGLAYGTTYEPAVFLYNKRLVKD TEVPQTHADFAKLVASQPERFKNKVTTYDIEKSAVGFMMAAQDNQDSPQYLDFIKAVGPNLVLQSSTGTMMERVASGENL LAYNILGSYAMARAKKDPSIGIVYPKDYTLVVSRVAMIAKKAQHPNAAKLWLDYILSKRGQDILANKSDLHSLRDDVTGE ATAAGLKQILGQSIKPIPVDESVLTFLEPKKRLDFIKQWRTAAGR >Mature_365_residues MLRGHFAPARAAVTAAALTLGTAAFAQVPAGYPASYADTIAAAKKEGKVVVYATTDTKAADPLIKDFESLYPGVKVEYND MNSSELYNRFISEQAAGGASADMMWNSSMDSQLKLAQTYALTYQSPEAASLPKWAVYKGLAYGTTYEPAVFLYNKRLVKD TEVPQTHADFAKLVASQPERFKNKVTTYDIEKSAVGFMMAAQDNQDSPQYLDFIKAVGPNLVLQSSTGTMMERVASGENL LAYNILGSYAMARAKKDPSIGIVYPKDYTLVVSRVAMIAKKAQHPNAAKLWLDYILSKRGQDILANKSDLHSLRDDVTGE ATAAGLKQILGQSIKPIPVDESVLTFLEPKKRLDFIKQWRTAAGR
Specific function: Unknown
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39865; Mature: 39865
Theoretical pI: Translated: 9.38; Mature: 9.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRGHFAPARAAVTAAALTLGTAAFAQVPAGYPASYADTIAAAKKEGKVVVYATTDTKAA CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC DPLIKDFESLYPGVKVEYNDMNSSELYNRFISEQAAGGASADMMWNSSMDSQLKLAQTYA CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHEE LTYQSPEAASLPKWAVYKGLAYGTTYEPAVFLYNKRLVKDTEVPQTHADFAKLVASQPER EEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHCCCHH FKNKVTTYDIEKSAVGFMMAAQDNQDSPQYLDFIKAVGPNLVLQSSTGTMMERVASGENL HHCCCCEEEECHHHHEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCE LAYNILGSYAMARAKKDPSIGIVYPKDYTLVVSRVAMIAKKAQHPNAAKLWLDYILSKRG EEHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC QDILANKSDLHSLRDDVTGEATAAGLKQILGQSIKPIPVDESVLTFLEPKKRLDFIKQWR CHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHHHHHHH TAAGR HHCCC >Mature Secondary Structure MLRGHFAPARAAVTAAALTLGTAAFAQVPAGYPASYADTIAAAKKEGKVVVYATTDTKAA CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC DPLIKDFESLYPGVKVEYNDMNSSELYNRFISEQAAGGASADMMWNSSMDSQLKLAQTYA CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHEE LTYQSPEAASLPKWAVYKGLAYGTTYEPAVFLYNKRLVKDTEVPQTHADFAKLVASQPER EEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHCCCHH FKNKVTTYDIEKSAVGFMMAAQDNQDSPQYLDFIKAVGPNLVLQSSTGTMMERVASGENL HHCCCCEEEECHHHHEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCE LAYNILGSYAMARAKKDPSIGIVYPKDYTLVVSRVAMIAKKAQHPNAAKLWLDYILSKRG EEHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC QDILANKSDLHSLRDDVTGEATAAGLKQILGQSIKPIPVDESVLTFLEPKKRLDFIKQWR CHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHHHHHHH TAAGR HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA