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The map label for this gene is fecI [C]

Identifier: 17547637

GI number: 17547637

Start: 3145390

End: 3145914

Strand: Direct

Name: fecI [C]

Synonym: RSc2918

Alternate gene names: 17547637

Gene position: 3145390-3145914 (Clockwise)

Preceding gene: 17547631

Following gene: 17547638

Centisome position: 84.64

GC content: 69.14

Gene sequence:

>525_bases
GTGTCCTGCGACCTGACCACCCTGCCCCTGCTCGCCGCGCTGGTTCGTCACTACGACGAGCTGGTCGACCTGCTGCGCCG
GCGCTTCGGCACCGACCGCAGTGCGGCACACGACGTGGTGCATGACGTCTGTGTCAACCTGCTGGCCGAACCGCCGCGCC
AGGTGGTGGCCGCGCCCGCAGCTTATGTGCGTCGCGCAGCACTCAACTTGGCGATCGACCGGCACCGGGTGGAATCCACG
CGCGGCGCCTGGGTGGAAAGCGCGGCCGAACTGCCCGACTGCGCCGACGAGATGCCCGGCCACGACCGCCATGTCGATGC
CGGCCGCGAGCTCGACCGGCTGTCGGCGGCCATCGCGCAGTTGCCGCCGCGCTGCCGGGAAGTGTTTGTGCTGCACAAGA
TTCATGACATGCCGCAGACAGAGGTAGCGGTAAGATTGGGGATTTCGCGCAAGGCGGTGGAGAAGCACATCCGGCGGGGC
ATGACAGCCTGCCGCGCCGCGCTGGACCGCCCCGAACCGCGTTGA

Upstream 100 bases:

>100_bases
CACCCCACGACGCCCCCAAATGTGCGCCCTCATACGGATTTGAAAATAAGAATTCTTCTCATTTACAATCAGGCGCTTTC
CCGTTCTGCTTCTTCGACCG

Downstream 100 bases:

>100_bases
GCATGTCCCACACCCCCGAAGAATTCGCCCGCGAGGAAGCCAGCCTGGCACGCCACCGTGCCGCGCTGCGACAGCGCTTC
GCCTTGCCGCCGGCGCCCGC

Product: extracytoplasmic function sigma factor (IRON-regulated) transcription regulator protein

Products: NA

Alternate protein names: Sigma-; Extracytoplasmic Function Sigma Factor Protein; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase ECF-Subfamily Sigma-70 Factor; RNA Polymerase Sigma Factor FecI Family; RNA Polymerase Sigma Factor FecI; RNA Polymerase Sigma-24 Factor; Extracytoplasmic Function Sigma; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSCDLTTLPLLAALVRHYDELVDLLRRRFGTDRSAAHDVVHDVCVNLLAEPPRQVVAAPAAYVRRAALNLAIDRHRVEST
RGAWVESAAELPDCADEMPGHDRHVDAGRELDRLSAAIAQLPPRCREVFVLHKIHDMPQTEVAVRLGISRKAVEKHIRRG
MTACRAALDRPEPR

Sequences:

>Translated_174_residues
MSCDLTTLPLLAALVRHYDELVDLLRRRFGTDRSAAHDVVHDVCVNLLAEPPRQVVAAPAAYVRRAALNLAIDRHRVEST
RGAWVESAAELPDCADEMPGHDRHVDAGRELDRLSAAIAQLPPRCREVFVLHKIHDMPQTEVAVRLGISRKAVEKHIRRG
MTACRAALDRPEPR
>Mature_173_residues
SCDLTTLPLLAALVRHYDELVDLLRRRFGTDRSAAHDVVHDVCVNLLAEPPRQVVAAPAAYVRRAALNLAIDRHRVESTR
GAWVESAAELPDCADEMPGHDRHVDAGRELDRLSAAIAQLPPRCREVFVLHKIHDMPQTEVAVRLGISRKAVEKHIRRGM
TACRAALDRPEPR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19439; Mature: 19307

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCDLTTLPLLAALVRHYDELVDLLRRRFGTDRSAAHDVVHDVCVNLLAEPPRQVVAAPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYVRRAALNLAIDRHRVESTRGAWVESAAELPDCADEMPGHDRHVDAGRELDRLSAAIAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH
LPPRCREVFVLHKIHDMPQTEVAVRLGISRKAVEKHIRRGMTACRAALDRPEPR
CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SCDLTTLPLLAALVRHYDELVDLLRRRFGTDRSAAHDVVHDVCVNLLAEPPRQVVAAPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYVRRAALNLAIDRHRVESTRGAWVESAAELPDCADEMPGHDRHVDAGRELDRLSAAIAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH
LPPRCREVFVLHKIHDMPQTEVAVRLGISRKAVEKHIRRGMTACRAALDRPEPR
CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA