| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is dppD1 [H]
Identifier: 17547586
GI number: 17547586
Start: 3089395
End: 3090414
Strand: Reverse
Name: dppD1 [H]
Synonym: RSc2867
Alternate gene names: 17547586
Gene position: 3090414-3089395 (Counterclockwise)
Preceding gene: 17547587
Following gene: 17547585
Centisome position: 83.16
GC content: 71.27
Gene sequence:
>1020_bases ATGACGATGTCCGCCACCGCCAGGCCGACGCTCGCCGTCGAGGGCCTGAAGACCGAGTTCACCACGCGTGGCGGCGTCGC GCGGGCGGTCGACGACGTGTCGTTCGCGGTCGGGCGCGGGGAGATCATGGGCCTGGTCGGCGAGTCCGGCTCGGGCAAGT CGATGACCGGCTATTCGATCATGGGCCTGATCGACCCGCCCGGGCGCGTGGTCGGCGGCCGGATTGAGCTGACCGGGCGC GATGGCGTGACGCACGACCTGCGCACGCTGCCGGCCGGGCAGATGCGCGACATGCGCGGCAACCGCATCGCCATGATCTT CCAGGATCCGATGATGACGCTGAACCCGGTCCTGCGCATCGATACGCAGATGACCGAGGCGGTGCTGGCGCATCAGCGCG TGAGCCGGCAGCGGGCGCGCGAGATGGCGGGGGAGGCGCTGGCCAGGGTCGGCATCCCGTCGCCGGAGGCGCGGCTGCAG GCGTATCCGCACCAGTTCTCGGGCGGCATGCGGCAGCGGGTGGCCATCGCCATCGCGCTGCTCAACAAGCCGGACCTGAT CATCGCCGACGAGCCGACCACGGCGCTGGACGTGACCATCCAGGGCCAGATCCTGGCCGAGGTGCAGACGCTGTGCCGCG AGAGCGGGACCGCGCTGATCTGGATCACGCACGATCTTTCCGTGGTGGCGGGCCTGGCCGATACCGTGTGCGTGATGTAC GCCGGCCGCATCGTCGAGCAGGGCAGCGTGCAGCAGGTGCTGGAGACGCCGCGCCATCCGTACACCTTCGGACTGATCGC CTCGGCGCCGTCGCGCAACCCGCGCGGCGTGCCGCTGCGGCAGATTCCCGGCATGGCGCCGTCGCTGCTGGCGCTGCCCG GCGGGTGCGCGTTCCGCGAGCGCTGTGCCTTTGCCTCCGACATTTGCAAGCAGGCGCCCGCGCTCGAGCGGCTCGACGAC GGCCGCGCGCTGCGCTGCTTTCACCCCGTGACCCAACGCCCCGAGGAGACCGCCGCATGA
Upstream 100 bases:
>100_bases TCAGCTTCTTTCCCGGCCTGGCGCTGCTGCTGACCATCGTGTCGATGAACCTGGTCTCGGACCAGCTCCGCGACGTGCTC AACCCCCGCCTGCAGACGCT
Downstream 100 bases:
>100_bases GCGCGACGCATCCCGAACACGATGCCGCCGTGGCCGTCGAGGCGCCGTCCGCCGAGCCCGGGCTGCGGGTGCCGATCCTG TCGCTGCGGGGCATGTCCAA
Product: oligopeptide ATP-binding ABC transporter protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MTMSATARPTLAVEGLKTEFTTRGGVARAVDDVSFAVGRGEIMGLVGESGSGKSMTGYSIMGLIDPPGRVVGGRIELTGR DGVTHDLRTLPAGQMRDMRGNRIAMIFQDPMMTLNPVLRIDTQMTEAVLAHQRVSRQRAREMAGEALARVGIPSPEARLQ AYPHQFSGGMRQRVAIAIALLNKPDLIIADEPTTALDVTIQGQILAEVQTLCRESGTALIWITHDLSVVAGLADTVCVMY AGRIVEQGSVQQVLETPRHPYTFGLIASAPSRNPRGVPLRQIPGMAPSLLALPGGCAFRERCAFASDICKQAPALERLDD GRALRCFHPVTQRPEETAA
Sequences:
>Translated_339_residues MTMSATARPTLAVEGLKTEFTTRGGVARAVDDVSFAVGRGEIMGLVGESGSGKSMTGYSIMGLIDPPGRVVGGRIELTGR DGVTHDLRTLPAGQMRDMRGNRIAMIFQDPMMTLNPVLRIDTQMTEAVLAHQRVSRQRAREMAGEALARVGIPSPEARLQ AYPHQFSGGMRQRVAIAIALLNKPDLIIADEPTTALDVTIQGQILAEVQTLCRESGTALIWITHDLSVVAGLADTVCVMY AGRIVEQGSVQQVLETPRHPYTFGLIASAPSRNPRGVPLRQIPGMAPSLLALPGGCAFRERCAFASDICKQAPALERLDD GRALRCFHPVTQRPEETAA >Mature_338_residues TMSATARPTLAVEGLKTEFTTRGGVARAVDDVSFAVGRGEIMGLVGESGSGKSMTGYSIMGLIDPPGRVVGGRIELTGRD GVTHDLRTLPAGQMRDMRGNRIAMIFQDPMMTLNPVLRIDTQMTEAVLAHQRVSRQRAREMAGEALARVGIPSPEARLQA YPHQFSGGMRQRVAIAIALLNKPDLIIADEPTTALDVTIQGQILAEVQTLCRESGTALIWITHDLSVVAGLADTVCVMYA GRIVEQGSVQQVLETPRHPYTFGLIASAPSRNPRGVPLRQIPGMAPSLLALPGGCAFRERCAFASDICKQAPALERLDDG RALRCFHPVTQRPEETAA
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=226, Percent_Identity=26.5486725663717, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI171184400, Length=250, Percent_Identity=28, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI4505771, Length=246, Percent_Identity=27.6422764227642, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI9961252, Length=246, Percent_Identity=27.6422764227642, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI42741659, Length=233, Percent_Identity=28.755364806867, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961250, Length=241, Percent_Identity=28.6307053941909, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI156105685, Length=236, Percent_Identity=31.7796610169492, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI31657092, Length=227, Percent_Identity=25.5506607929515, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI9955968, Length=236, Percent_Identity=31.3559322033898, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9955966, Length=236, Percent_Identity=31.3559322033898, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI45243524, Length=236, Percent_Identity=31.3559322033898, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI9955963, Length=226, Percent_Identity=29.2035398230088, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI215820660, Length=239, Percent_Identity=29.2887029288703, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI20143975, Length=239, Percent_Identity=29.2887029288703, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48994883, Length=322, Percent_Identity=46.8944099378882, Blast_Score=303, Evalue=1e-83, Organism=Escherichia coli, GI1789963, Length=321, Percent_Identity=44.8598130841121, Blast_Score=283, Evalue=9e-78, Organism=Escherichia coli, GI1787759, Length=328, Percent_Identity=46.3414634146341, Blast_Score=268, Evalue=4e-73, Organism=Escherichia coli, GI145693107, Length=262, Percent_Identity=47.3282442748092, Blast_Score=229, Evalue=2e-61, Organism=Escherichia coli, GI1788506, Length=269, Percent_Identity=45.724907063197, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1789962, Length=334, Percent_Identity=37.7245508982036, Blast_Score=215, Evalue=4e-57, Organism=Escherichia coli, GI1787500, Length=321, Percent_Identity=38.3177570093458, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1787758, Length=303, Percent_Identity=39.6039603960396, Blast_Score=197, Evalue=9e-52, Organism=Escherichia coli, GI1787548, Length=315, Percent_Identity=37.1428571428571, Blast_Score=193, Evalue=1e-50, Organism=Escherichia coli, GI1789890, Length=239, Percent_Identity=37.2384937238494, Blast_Score=140, Evalue=8e-35, Organism=Escherichia coli, GI1787547, Length=262, Percent_Identity=32.0610687022901, Blast_Score=124, Evalue=9e-30, Organism=Escherichia coli, GI48994997, Length=261, Percent_Identity=33.7164750957854, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1789032, Length=287, Percent_Identity=32.0557491289199, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=33.0612244897959, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=32.9004329004329, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1787370, Length=245, Percent_Identity=30.2040816326531, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1786398, Length=241, Percent_Identity=30.2904564315353, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1788450, Length=238, Percent_Identity=30.672268907563, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI87081791, Length=260, Percent_Identity=29.6153846153846, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081834, Length=199, Percent_Identity=34.1708542713568, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=34.2465753424658, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI87081709, Length=241, Percent_Identity=31.5352697095436, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI1787029, Length=237, Percent_Identity=30.379746835443, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI1788644, Length=248, Percent_Identity=32.6612903225806, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1789672, Length=246, Percent_Identity=30.4878048780488, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786703, Length=200, Percent_Identity=35.5, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1786872, Length=212, Percent_Identity=33.0188679245283, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1787105, Length=237, Percent_Identity=31.6455696202532, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87082267, Length=261, Percent_Identity=31.0344827586207, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1790467, Length=248, Percent_Identity=29.8387096774194, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1790162, Length=263, Percent_Identity=25.4752851711027, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=31.5270935960591, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787143, Length=267, Percent_Identity=32.2097378277154, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786253, Length=234, Percent_Identity=29.4871794871795, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1788761, Length=248, Percent_Identity=26.2096774193548, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1786563, Length=281, Percent_Identity=27.4021352313167, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789991, Length=230, Percent_Identity=29.1304347826087, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI48995001, Length=239, Percent_Identity=30.1255230125523, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1786345, Length=253, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789864, Length=260, Percent_Identity=25.3846153846154, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790544, Length=271, Percent_Identity=27.6752767527675, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786319, Length=248, Percent_Identity=26.6129032258064, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786654, Length=236, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790525, Length=252, Percent_Identity=27.3809523809524, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788053, Length=204, Percent_Identity=27.9411764705882, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=28.110599078341, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787972, Length=236, Percent_Identity=26.271186440678, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787792, Length=244, Percent_Identity=26.6393442622951, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786803, Length=128, Percent_Identity=33.59375, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789586, Length=238, Percent_Identity=26.890756302521, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1790190, Length=224, Percent_Identity=27.6785714285714, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71992285, Length=251, Percent_Identity=32.2709163346614, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI115534520, Length=263, Percent_Identity=30.7984790874525, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193208177, Length=229, Percent_Identity=30.1310043668122, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI193209708, Length=219, Percent_Identity=31.5068493150685, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193202349, Length=225, Percent_Identity=28, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17541710, Length=231, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI25146777, Length=256, Percent_Identity=26.5625, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569143, Length=226, Percent_Identity=28.7610619469027, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI32566680, Length=241, Percent_Identity=27.8008298755187, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567265, Length=245, Percent_Identity=26.530612244898, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569145, Length=226, Percent_Identity=26.9911504424779, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115533592, Length=252, Percent_Identity=26.5873015873016, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17558664, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=250, Percent_Identity=22.8, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI24659289, Length=246, Percent_Identity=28.8617886178862, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI17647959, Length=243, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI17136662, Length=249, Percent_Identity=29.3172690763052, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI85726357, Length=259, Percent_Identity=26.2548262548263, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI281363262, Length=254, Percent_Identity=27.1653543307087, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24653245, Length=254, Percent_Identity=27.1653543307087, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574533, Length=261, Percent_Identity=26.8199233716475, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24662800, Length=251, Percent_Identity=25.0996015936255, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36432; Mature: 36300
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMSATARPTLAVEGLKTEFTTRGGVARAVDDVSFAVGRGEIMGLVGESGSGKSMTGYSI CCCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHEECCCEEEEEECCCCCCCCCCCEEE MGLIDPPGRVVGGRIELTGRDGVTHDLRTLPAGQMRDMRGNRIAMIFQDPMMTLNPVLRI EEEECCCCCEECCEEEEECCCCCCHHHHHCCCCHHHHCCCCEEEEEEECCCCHHCCCEEE DTQMTEAVLAHQRVSRQRAREMAGEALARVGIPSPEARLQAYPHQFSGGMRQRVAIAIAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCHHHHEEEEEEE LNKPDLIIADEPTTALDVTIQGQILAEVQTLCRESGTALIWITHDLSVVAGLADTVCVMY ECCCCEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH AGRIVEQGSVQQVLETPRHPYTFGLIASAPSRNPRGVPLRQIPGMAPSLLALPGGCAFRE HHHHHCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHCCCCCCHHHH RCAFASDICKQAPALERLDDGRALRCFHPVTQRPEETAA HHHHHHHHHHHCCHHHHCCCCCEEEEECHHHCCCHHCCC >Mature Secondary Structure TMSATARPTLAVEGLKTEFTTRGGVARAVDDVSFAVGRGEIMGLVGESGSGKSMTGYSI CCCCCCCCEEEECCCCHHHCCCCCHHHHHHHHHHEECCCEEEEEECCCCCCCCCCCEEE MGLIDPPGRVVGGRIELTGRDGVTHDLRTLPAGQMRDMRGNRIAMIFQDPMMTLNPVLRI EEEECCCCCEECCEEEEECCCCCCHHHHHCCCCHHHHCCCCEEEEEEECCCCHHCCCEEE DTQMTEAVLAHQRVSRQRAREMAGEALARVGIPSPEARLQAYPHQFSGGMRQRVAIAIAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCHHHHEEEEEEE LNKPDLIIADEPTTALDVTIQGQILAEVQTLCRESGTALIWITHDLSVVAGLADTVCVMY ECCCCEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH AGRIVEQGSVQQVLETPRHPYTFGLIASAPSRNPRGVPLRQIPGMAPSLLALPGGCAFRE HHHHHCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHCCCCCCHHHH RCAFASDICKQAPALERLDDGRALRCFHPVTQRPEETAA HHHHHHHHHHHCCHHHHCCCCCEEEEECHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]