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The map label for this gene is yomI [H]

Identifier: 17547534

GI number: 17547534

Start: 3028303

End: 3029040

Strand: Reverse

Name: yomI [H]

Synonym: RSc2815

Alternate gene names: 17547534

Gene position: 3029040-3028303 (Counterclockwise)

Preceding gene: 17547535

Following gene: 17547533

Centisome position: 81.5

GC content: 70.6

Gene sequence:

>738_bases
ATGCGCCGCTTCCCGGTCCGCCTGATCGCCGCCACGCTGTGCGCGGTGGCGCTGCTCGCGGGTACGCGCTCGGCGTGGGC
GGGTGCGCAGAAAGAGGAATACCTGGCCGACTCGGTGCGCAGCGCGCTGTCCGCCGCCGTGGCCGACAGCCGTCCGCTGC
GCCCGGTGTTTGCCAGCAACGAAGAGCAGCTCGGCTACCTGCGCTGGCTGGCGGAGATGTCGGCGCGCATGTCCGCCAAG
ATTCCGCTGGCATCGGTCCGCGTCGAGCTGATCGAGACGGCGTACTACGAGGCCAAGCGGGCGGGGCTGGATCCGGCGCT
GGTGCTCGGCCTGATCCAGGTGGAAAGCGGCTTCCGCAAGTACGCCATGAGCGGCGCCGGCGCCATGGGCCTGATGCAGG
TGATGCCGTTCTGGACGCGCAGCATCGGCGACAAGGACGTGCGCAAGCTGTTCCACCTGCAGAGCAACCTGCGCTACGGC
TGCACCATCCTCCGGCACTACCTCGACATGGAGGGCGGCAACCTCTACCTGGCGCTGGGCCGCTACAACGGCAGCCGCGG
CCAGCCGCAATATCCGAACGCCGTGCTGGCGGCCTGGAAGCGCTGGCAGTATCAGGATGCAACGGTGACGACCGTGTCCG
CGCCCGCGCCGTCGGGGGCCGCGCCGCGCGCCAAGGCGCTGCCGGACTCGCCGGCGCGCAATCCGTTCTCGCCGCTGCGC
ATCGCCGGCGGTTCCTGA

Upstream 100 bases:

>100_bases
AACTGCAGGGCCGCCGCGACGAGGCCGCCGCCGCCGTGGCGCCGGCCGACGTGCTGGCCACCCTCAAGTCGCGCCTGGCG
CAATAACGGTGCCGGACGCC

Downstream 100 bases:

>100_bases
CGGCGGCTGCGGCGGGGATCGACCTACAATAGGGCCATCCGTCCGCCCTTCGCCTGCTTTCGCAATGTCCACGACCGAAC
CGTACGCGACCATGTCCGAT

Product: signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MRRFPVRLIAATLCAVALLAGTRSAWAGAQKEEYLADSVRSALSAAVADSRPLRPVFASNEEQLGYLRWLAEMSARMSAK
IPLASVRVELIETAYYEAKRAGLDPALVLGLIQVESGFRKYAMSGAGAMGLMQVMPFWTRSIGDKDVRKLFHLQSNLRYG
CTILRHYLDMEGGNLYLALGRYNGSRGQPQYPNAVLAAWKRWQYQDATVTTVSAPAPSGAAPRAKALPDSPARNPFSPLR
IAGGS

Sequences:

>Translated_245_residues
MRRFPVRLIAATLCAVALLAGTRSAWAGAQKEEYLADSVRSALSAAVADSRPLRPVFASNEEQLGYLRWLAEMSARMSAK
IPLASVRVELIETAYYEAKRAGLDPALVLGLIQVESGFRKYAMSGAGAMGLMQVMPFWTRSIGDKDVRKLFHLQSNLRYG
CTILRHYLDMEGGNLYLALGRYNGSRGQPQYPNAVLAAWKRWQYQDATVTTVSAPAPSGAAPRAKALPDSPARNPFSPLR
IAGGS
>Mature_245_residues
MRRFPVRLIAATLCAVALLAGTRSAWAGAQKEEYLADSVRSALSAAVADSRPLRPVFASNEEQLGYLRWLAEMSARMSAK
IPLASVRVELIETAYYEAKRAGLDPALVLGLIQVESGFRKYAMSGAGAMGLMQVMPFWTRSIGDKDVRKLFHLQSNLRYG
CTILRHYLDMEGGNLYLALGRYNGSRGQPQYPNAVLAAWKRWQYQDATVTTVSAPAPSGAAPRAKALPDSPARNPFSPLR
IAGGS

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 26722; Mature: 26722

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFPVRLIAATLCAVALLAGTRSAWAGAQKEEYLADSVRSALSAAVADSRPLRPVFASN
CCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCC
EEQLGYLRWLAEMSARMSAKIPLASVRVELIETAYYEAKRAGLDPALVLGLIQVESGFRK
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YAMSGAGAMGLMQVMPFWTRSIGDKDVRKLFHLQSNLRYGCTILRHYLDMEGGNLYLALG
HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEE
RYNGSRGQPQYPNAVLAAWKRWQYQDATVTTVSAPAPSGAAPRAKALPDSPARNPFSPLR
CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
IAGGS
ECCCC
>Mature Secondary Structure
MRRFPVRLIAATLCAVALLAGTRSAWAGAQKEEYLADSVRSALSAAVADSRPLRPVFASN
CCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCC
EEQLGYLRWLAEMSARMSAKIPLASVRVELIETAYYEAKRAGLDPALVLGLIQVESGFRK
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YAMSGAGAMGLMQVMPFWTRSIGDKDVRKLFHLQSNLRYGCTILRHYLDMEGGNLYLALG
HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEE
RYNGSRGQPQYPNAVLAAWKRWQYQDATVTTVSAPAPSGAAPRAKALPDSPARNPFSPLR
CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
IAGGS
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]