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The map label for this gene is yfeR [H]

Identifier: 17547256

GI number: 17547256

Start: 2745246

End: 2746139

Strand: Reverse

Name: yfeR [H]

Synonym: RSc2537

Alternate gene names: 17547256

Gene position: 2746139-2745246 (Counterclockwise)

Preceding gene: 17547258

Following gene: 17547254

Centisome position: 73.89

GC content: 71.7

Gene sequence:

>894_bases
ATGAATGTGACGCTGCGCCAGTTGCGCGTCTTCCTTGCCGTGGCACGCGCGCACAGCTTCAGTCGCGCGGGCGACACGAT
CGGCCTGACCCAGCCCGCCGTCAGCCGGTCGATCTCGGAGCTGGAAGGCGAACTGGGGCTCAAGCTGCTTGACCGCACCA
CGCGCGAGGTGGTGCTGACCGAGGTGGGGCGCTCGCTGGCGACGGCGCTCGAGCGCCTCGTCGCCGACCTGGACGACACG
CTGCACCAGGCGCGCCAGGTGGGCGAGCAGCGGCGCGGCCGCGTGGTGGTGGCGTCGAGCCCGACGGTGTCGACGCGGCT
GATGCCGCTCTACGTGGCCGAGTGCGCCAAGCGCTATCCCGACATCCGCATGATCGTGCGCGATTCGGTGCAGGTCGATA
CGCTGCAGCTGATCCGCGGCGGCGGCGCCGACTTCGGCGTGGTGATCGAGCCGCTGGACACCGAGGGCCTGTGGACCGAG
CCGCTGCTGACCGATCCGTTCTGCCTGGTGTGCCGACGCGACCATCCGTTCGCGCGGCGCGGCAGCGTGCGCTGGAAAGA
GCTGCACCGCACCGCCATCGTGCTGCTCGACCACGCTTCCGGCAGCCGTCCGCTGCTCGACCGCATCTTCCTGCGCCACG
GCGTGCAGCCCGATGTGGCGCAGGAGATGGGGCATACCGCCGCCGTGTTCGGCATGGTGGAGGCCGGCATCGGCGCGGGC
GTGGTGCCGGCGCTTTCGCTGCCGCTGCCGTCGTCGTCGCAACTGGTGTCGGTGCCGCTTGCGCCGCGCGAGACGCGCGG
CATCGTATTGGCGCGGCGGCATGACCGCTCGCTGTCGCCGGCGGCCGAGGCGGCATGGCAGATGATCCGCCGCATGGCGC
TGCCGGCCGGCTAG

Upstream 100 bases:

>100_bases
GCCGCCACGGCGCCGATCGGATCAAGGGATGGCCGCTATTGCACGCCATCCCCGCCTAGAATACAAATGCATTGATCGAA
TCAATTCATACGGTACTCAC

Downstream 100 bases:

>100_bases
CCGCATCAGGGCCTCGCGGCGCTATTTGGCGGTCGGCATGGCGAACTCGGCGCCCTTGCCGATACTGGACGACCAGCGCT
GCATGACCGACTTCTGCCGC

Product: transcription regulator transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNVTLRQLRVFLAVARAHSFSRAGDTIGLTQPAVSRSISELEGELGLKLLDRTTREVVLTEVGRSLATALERLVADLDDT
LHQARQVGEQRRGRVVVASSPTVSTRLMPLYVAECAKRYPDIRMIVRDSVQVDTLQLIRGGGADFGVVIEPLDTEGLWTE
PLLTDPFCLVCRRDHPFARRGSVRWKELHRTAIVLLDHASGSRPLLDRIFLRHGVQPDVAQEMGHTAAVFGMVEAGIGAG
VVPALSLPLPSSSQLVSVPLAPRETRGIVLARRHDRSLSPAAEAAWQMIRRMALPAG

Sequences:

>Translated_297_residues
MNVTLRQLRVFLAVARAHSFSRAGDTIGLTQPAVSRSISELEGELGLKLLDRTTREVVLTEVGRSLATALERLVADLDDT
LHQARQVGEQRRGRVVVASSPTVSTRLMPLYVAECAKRYPDIRMIVRDSVQVDTLQLIRGGGADFGVVIEPLDTEGLWTE
PLLTDPFCLVCRRDHPFARRGSVRWKELHRTAIVLLDHASGSRPLLDRIFLRHGVQPDVAQEMGHTAAVFGMVEAGIGAG
VVPALSLPLPSSSQLVSVPLAPRETRGIVLARRHDRSLSPAAEAAWQMIRRMALPAG
>Mature_297_residues
MNVTLRQLRVFLAVARAHSFSRAGDTIGLTQPAVSRSISELEGELGLKLLDRTTREVVLTEVGRSLATALERLVADLDDT
LHQARQVGEQRRGRVVVASSPTVSTRLMPLYVAECAKRYPDIRMIVRDSVQVDTLQLIRGGGADFGVVIEPLDTEGLWTE
PLLTDPFCLVCRRDHPFARRGSVRWKELHRTAIVLLDHASGSRPLLDRIFLRHGVQPDVAQEMGHTAAVFGMVEAGIGAG
VVPALSLPLPSSSQLVSVPLAPRETRGIVLARRHDRSLSPAAEAAWQMIRRMALPAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=48.9655172413793, Blast_Score=265, Evalue=3e-72,
Organism=Escherichia coli, GI145693105, Length=286, Percent_Identity=32.1678321678322, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=29.0102389078498, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=28.2685512367491, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788481, Length=264, Percent_Identity=28.030303030303, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1790399, Length=272, Percent_Identity=27.2058823529412, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788887, Length=259, Percent_Identity=25.0965250965251, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1789204, Length=247, Percent_Identity=28.7449392712551, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=29.0502793296089, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI2367136, Length=241, Percent_Identity=26.5560165975104, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=25.1028806584362, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=23.2558139534884, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=21.8106995884774, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=125, Percent_Identity=32.8, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787128, Length=156, Percent_Identity=33.974358974359, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789506, Length=258, Percent_Identity=22.4806201550388, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=28.6516853932584, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789639, Length=118, Percent_Identity=28.8135593220339, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789173, Length=171, Percent_Identity=31.5789473684211, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790262, Length=242, Percent_Identity=24.7933884297521, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32501; Mature: 32501

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTLRQLRVFLAVARAHSFSRAGDTIGLTQPAVSRSISELEGELGLKLLDRTTREVVLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
EVGRSLATALERLVADLDDTLHQARQVGEQRRGRVVVASSPTVSTRLMPLYVAECAKRYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCC
DIRMIVRDSVQVDTLQLIRGGGADFGVVIEPLDTEGLWTEPLLTDPFCLVCRRDHPFARR
CEEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHC
GSVRWKELHRTAIVLLDHASGSRPLLDRIFLRHGVQPDVAQEMGHTAAVFGMVEAGIGAG
CCCHHHHHHHEEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHCCCCC
VVPALSLPLPSSSQLVSVPLAPRETRGIVLARRHDRSLSPAAEAAWQMIRRMALPAG
CHHHEECCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNVTLRQLRVFLAVARAHSFSRAGDTIGLTQPAVSRSISELEGELGLKLLDRTTREVVLT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
EVGRSLATALERLVADLDDTLHQARQVGEQRRGRVVVASSPTVSTRLMPLYVAECAKRYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCC
DIRMIVRDSVQVDTLQLIRGGGADFGVVIEPLDTEGLWTEPLLTDPFCLVCRRDHPFARR
CEEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHC
GSVRWKELHRTAIVLLDHASGSRPLLDRIFLRHGVQPDVAQEMGHTAAVFGMVEAGIGAG
CCCHHHHHHHEEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHCCCCC
VVPALSLPLPSSSQLVSVPLAPRETRGIVLARRHDRSLSPAAEAAWQMIRRMALPAG
CHHHEECCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]