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The map label for this gene is hycF [C]

Identifier: 17547095

GI number: 17547095

Start: 2579650

End: 2581809

Strand: Reverse

Name: hycF [C]

Synonym: RSc2376

Alternate gene names: 17547095

Gene position: 2581809-2579650 (Counterclockwise)

Preceding gene: 17547096

Following gene: 17547094

Centisome position: 69.47

GC content: 72.78

Gene sequence:

>2160_bases
ATGCCCACGCTGGTCTGCAGTTGCAATCACACGATGCCGCTCGACGCCGACGCGGTGAGCGACGGGCTGCGCGCGTCCGG
TGCGCCCATCGATGCGCCCGGCCAGACGCATCACCTGCTGTGCCGCCGCGAGATCGGCGCCTTCTCCCGGGCCCTGGACG
GCGACGAGGATGTGATCGTCGCCTGTACGCAGGAGGCCGCGTTGTTCACCGAGGTGGCCGCCCGGCATGGCGGCGTGACG
GCGCCGATCCATTTCGTCAACGTGCGCGAGACGGGCGGATGGTCGGCGGGGGCGCGGCGGGATGCGCGCGGCTTCCACGC
CAAGGCCGCGGCGTTGCTGGCGGTGGCCGGCCTGCCGGCGCCGGACCCGGTGCCCGTGGTCGATTACCGTTCCGACGGCA
GCCTGCTGATCGTCGGCCCGGCCGAGCGCGCGCTGCCCTGGGCCGAGCGCCTGGCCGACCAGTTGAGCGTGACCGTGCTG
GCGACCGGCCGCGATCGCGGCGCCGGCCCGCTGTCGCCGCCCATGGCCCGCCGCTGGCCGATCCAGGCGGGCGAGCGGGT
GCAGGTGAGCGGCTGGCTCGGTGCCTTCGACGTGCAGTGGCAAAGCCGCAACCCGATCGACCTGGACCGCTGCACGCGCT
GCAACGCCTGCATCGATGCCTGCCCGGAAGACGCCATCGACACGCTCTACCAGATCGACCTGGAGGCCTGTCGCGACCAC
CGTGATTGCGTCAGGGCATGCGGCGAGGCGATGGCCATCGACTTCGGGCGGCTCGATGCGCCGCAGACCGCCTCCGGCCG
GTTCGACCTGATCCTCGACCTGAACGACGCGCCGGCCTTCGCGCAGCACCAGCCGCCGCAGGGCTACTTCCATGCCGGCG
CCGACGCCGGCCGCCAGCTCACCGCATCGCTGGCGCTGCTCCAACTGGTGGGCGAGTTCGAGAAGCCCCGGTTCTTCCAG
TACAAGGCCTCGATCTGCGCGCACGGCCGCAATGGCCAGGTCGGCTGCGATGCCTGCGTGCGGGTCTGCTCGGCCGCGGC
GATCACGTCGCAGTGGAAGGATGGGCGCGGCAGCGTGCATGTCACGCCCAACCTGTGCGTCGGCTGCGGTGCGTGCACCA
CGGCATGCCCGACCGGCGCGCTGACCTATGCCTACCCGAGCGCGCCATACCAGGGGCGCAAGCTGAAGACGCTGCTGTCG
ACCCATGCGGCGGCGGGCGGGCACGACGCGGTGGTCCTGCTGCACAACGGCGGTCGCGGCCGCGCGCTGATCGAGCAGCT
CGGCCGCGCCGCGCGGACCGGCAAGGCGCAGGGCGTGCCGGTCAACGTGCTGCCGGTCGAGGTGTTCCACGCGGCGTCGA
CGGGGCTCGATCTGTGGCTGTCGGCGCTGGCCTATGGAGCGGCACGCATCGCCATTCTGCTGACCGAGGACGATGCGCCG
CAGTATCGCGCCATGCTCGCCGAACAGGCGGCGGTGGCCCGGGCCGTGCTGGCTGGGCTGGGCGAGCCGGCCGATGCGGC
CGGCGTGGTGCTGATCGACGCGCCGGATGCCGGCGCGCTCGATGCCCGTCTCAATGCCGTCGAAGTGTGCGGCCCCGTGC
AGGGCTTCCGGGCCGACATGCCGCCCGCCACGTTTGCCGTGGCCGCCGCCAAGCGCGAGACGCTTGCGTTCGCGCTCGAT
CACCTGGCGCGCCACGCCGGGGCGGTCGACGCCGTGATTCCGCTGCCGGCCGGCGCGCCGTTCGGCGCCATCGAGGTGGA
CCGCGCGCGCTGCACGCTGTGCATGGCCTGCGTGAGCGCCTGCCCGTCGCAGGCGCTGCGCGATGCGGCCGAGCGGCCGG
TGCTGTCGATGATCGAGCGCAACTGCGTCCAGTGCGGCCTGTGCGATACCACCTGCCCCGAAGACGCCATCGCGCTGGTG
CCGCGGCTGAACCTGTCGGCTGACGCACGCCAGCCGGTCGTGCTCAATGAGACCCAGCCGTTCCATTGCATCCGCTGCGG
CAAGCCGTTCGGCACGGCGCAGATGGTCGCCGCCATGATGGCCCGGCTCGGCGCCCATCCGGCCTTTGCCGGCGCGGCGG
GCGAGCGCCTGAAGATGTGCGGCGACTGCCGCGTGATCGACATGCTGGAGGGGGGCGAGCAGCCCGGCGCCACGCACTGA

Upstream 100 bases:

>100_bases
CCTCCGTAGAATAGAGGCGAGGACCGCGCGGCCATGACCGCGCGGCCGTGTGTGTCCCCACAGCCCGCGCAGCCGGCGCG
GGCACCCATGCGCAACCTCC

Downstream 100 bases:

>100_bases
ACCCGCCGCCCCGAGCCCATGACCGACGCTCAGCCCCTGCAGTTCCAGCTTGCCGCCACGCCCGCCGACAGCGCGGAGGA
TCTCGCCCGCGCCGACCTGT

Product: ferredoxin protein

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: Methyl-Viologen-Reducing Hydrogenase Delta Subunit; 4Fe-4S Ferredoxin; 4fe-4S Ferredoxin; Polyferredoxins; Ferridoxin Protein

Number of amino acids: Translated: 719; Mature: 718

Protein sequence:

>719_residues
MPTLVCSCNHTMPLDADAVSDGLRASGAPIDAPGQTHHLLCRREIGAFSRALDGDEDVIVACTQEAALFTEVAARHGGVT
APIHFVNVRETGGWSAGARRDARGFHAKAAALLAVAGLPAPDPVPVVDYRSDGSLLIVGPAERALPWAERLADQLSVTVL
ATGRDRGAGPLSPPMARRWPIQAGERVQVSGWLGAFDVQWQSRNPIDLDRCTRCNACIDACPEDAIDTLYQIDLEACRDH
RDCVRACGEAMAIDFGRLDAPQTASGRFDLILDLNDAPAFAQHQPPQGYFHAGADAGRQLTASLALLQLVGEFEKPRFFQ
YKASICAHGRNGQVGCDACVRVCSAAAITSQWKDGRGSVHVTPNLCVGCGACTTACPTGALTYAYPSAPYQGRKLKTLLS
THAAAGGHDAVVLLHNGGRGRALIEQLGRAARTGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP
QYRAMLAEQAAVARAVLAGLGEPADAAGVVLIDAPDAGALDARLNAVEVCGPVQGFRADMPPATFAVAAAKRETLAFALD
HLARHAGAVDAVIPLPAGAPFGAIEVDRARCTLCMACVSACPSQALRDAAERPVLSMIERNCVQCGLCDTTCPEDAIALV
PRLNLSADARQPVVLNETQPFHCIRCGKPFGTAQMVAAMMARLGAHPAFAGAAGERLKMCGDCRVIDMLEGGEQPGATH

Sequences:

>Translated_719_residues
MPTLVCSCNHTMPLDADAVSDGLRASGAPIDAPGQTHHLLCRREIGAFSRALDGDEDVIVACTQEAALFTEVAARHGGVT
APIHFVNVRETGGWSAGARRDARGFHAKAAALLAVAGLPAPDPVPVVDYRSDGSLLIVGPAERALPWAERLADQLSVTVL
ATGRDRGAGPLSPPMARRWPIQAGERVQVSGWLGAFDVQWQSRNPIDLDRCTRCNACIDACPEDAIDTLYQIDLEACRDH
RDCVRACGEAMAIDFGRLDAPQTASGRFDLILDLNDAPAFAQHQPPQGYFHAGADAGRQLTASLALLQLVGEFEKPRFFQ
YKASICAHGRNGQVGCDACVRVCSAAAITSQWKDGRGSVHVTPNLCVGCGACTTACPTGALTYAYPSAPYQGRKLKTLLS
THAAAGGHDAVVLLHNGGRGRALIEQLGRAARTGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP
QYRAMLAEQAAVARAVLAGLGEPADAAGVVLIDAPDAGALDARLNAVEVCGPVQGFRADMPPATFAVAAAKRETLAFALD
HLARHAGAVDAVIPLPAGAPFGAIEVDRARCTLCMACVSACPSQALRDAAERPVLSMIERNCVQCGLCDTTCPEDAIALV
PRLNLSADARQPVVLNETQPFHCIRCGKPFGTAQMVAAMMARLGAHPAFAGAAGERLKMCGDCRVIDMLEGGEQPGATH
>Mature_718_residues
PTLVCSCNHTMPLDADAVSDGLRASGAPIDAPGQTHHLLCRREIGAFSRALDGDEDVIVACTQEAALFTEVAARHGGVTA
PIHFVNVRETGGWSAGARRDARGFHAKAAALLAVAGLPAPDPVPVVDYRSDGSLLIVGPAERALPWAERLADQLSVTVLA
TGRDRGAGPLSPPMARRWPIQAGERVQVSGWLGAFDVQWQSRNPIDLDRCTRCNACIDACPEDAIDTLYQIDLEACRDHR
DCVRACGEAMAIDFGRLDAPQTASGRFDLILDLNDAPAFAQHQPPQGYFHAGADAGRQLTASLALLQLVGEFEKPRFFQY
KASICAHGRNGQVGCDACVRVCSAAAITSQWKDGRGSVHVTPNLCVGCGACTTACPTGALTYAYPSAPYQGRKLKTLLST
HAAAGGHDAVVLLHNGGRGRALIEQLGRAARTGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAPQ
YRAMLAEQAAVARAVLAGLGEPADAAGVVLIDAPDAGALDARLNAVEVCGPVQGFRADMPPATFAVAAAKRETLAFALDH
LARHAGAVDAVIPLPAGAPFGAIEVDRARCTLCMACVSACPSQALRDAAERPVLSMIERNCVQCGLCDTTCPEDAIALVP
RLNLSADARQPVVLNETQPFHCIRCGKPFGTAQMVAAMMARLGAHPAFAGAAGERLKMCGDCRVIDMLEGGEQPGATH

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75378; Mature: 75246

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLVCSCNHTMPLDADAVSDGLRASGAPIDAPGQTHHLLCRREIGAFSRALDGDEDVIV
CCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEE
ACTQEAALFTEVAARHGGVTAPIHFVNVRETGGWSAGARRDARGFHAKAAALLAVAGLPA
EECCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
PDPVPVVDYRSDGSLLIVGPAERALPWAERLADQLSVTVLATGRDRGAGPLSPPMARRWP
CCCCCEEEECCCCCEEEECCHHHCCHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCC
IQAGERVQVSGWLGAFDVQWQSRNPIDLDRCTRCNACIDACPEDAIDTLYQIDLEACRDH
CCCCCEEEEEECEEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
RDCVRACGEAMAIDFGRLDAPQTASGRFDLILDLNDAPAFAQHQPPQGYFHAGADAGRQL
HHHHHHCCHHEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCHHH
TASLALLQLVGEFEKPRFFQYKASICAHGRNGQVGCDACVRVCSAAAITSQWKDGRGSVH
HHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
VTPNLCVGCGACTTACPTGALTYAYPSAPYQGRKLKTLLSTHAAAGGHDAVVLLHNGGRG
ECCCCEEECCCHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCC
RALIEQLGRAARTGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP
HHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHCCEEEEEEEECCCCH
QYRAMLAEQAAVARAVLAGLGEPADAAGVVLIDAPDAGALDARLNAVEVCGPVQGFRADM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCHHHHCCCCCCCCCCC
PPATFAVAAAKRETLAFALDHLARHAGAVDAVIPLPAGAPFGAIEVDRARCTLCMACVSA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECHHHHHHHHHHHHH
CPSQALRDAAERPVLSMIERNCVQCGLCDTTCPEDAIALVPRLNLSADARQPVVLNETQP
CHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCCCC
FHCIRCGKPFGTAQMVAAMMARLGAHPAFAGAAGERLKMCGDCRVIDMLEGGEQPGATH
EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEHHCCCCCCCCCC
>Mature Secondary Structure 
PTLVCSCNHTMPLDADAVSDGLRASGAPIDAPGQTHHLLCRREIGAFSRALDGDEDVIV
CEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEE
ACTQEAALFTEVAARHGGVTAPIHFVNVRETGGWSAGARRDARGFHAKAAALLAVAGLPA
EECCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
PDPVPVVDYRSDGSLLIVGPAERALPWAERLADQLSVTVLATGRDRGAGPLSPPMARRWP
CCCCCEEEECCCCCEEEECCHHHCCHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCC
IQAGERVQVSGWLGAFDVQWQSRNPIDLDRCTRCNACIDACPEDAIDTLYQIDLEACRDH
CCCCCEEEEEECEEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
RDCVRACGEAMAIDFGRLDAPQTASGRFDLILDLNDAPAFAQHQPPQGYFHAGADAGRQL
HHHHHHCCHHEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCHHH
TASLALLQLVGEFEKPRFFQYKASICAHGRNGQVGCDACVRVCSAAAITSQWKDGRGSVH
HHHHHHHHHHHCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
VTPNLCVGCGACTTACPTGALTYAYPSAPYQGRKLKTLLSTHAAAGGHDAVVLLHNGGRG
ECCCCEEECCCHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCC
RALIEQLGRAARTGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP
HHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCHHHHHHHHHHCCEEEEEEEECCCCH
QYRAMLAEQAAVARAVLAGLGEPADAAGVVLIDAPDAGALDARLNAVEVCGPVQGFRADM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCHHHHCCCCCCCCCCC
PPATFAVAAAKRETLAFALDHLARHAGAVDAVIPLPAGAPFGAIEVDRARCTLCMACVSA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECHHHHHHHHHHHHH
CPSQALRDAAERPVLSMIERNCVQCGLCDTTCPEDAIALVPRLNLSADARQPVVLNETQP
CHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCCCC
FHCIRCGKPFGTAQMVAAMMARLGAHPAFAGAAGERLKMCGDCRVIDMLEGGEQPGATH
EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEEHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA