| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is comE [H]
Identifier: 17547022
GI number: 17547022
Start: 2502818
End: 2505187
Strand: Reverse
Name: comE [H]
Synonym: RSc2303
Alternate gene names: 17547022
Gene position: 2505187-2502818 (Counterclockwise)
Preceding gene: 17547023
Following gene: 17547021
Centisome position: 67.41
GC content: 69.11
Gene sequence:
>2370_bases ATGAAACCGTCCTGCCGTCCGGGTGCGGCGCTTGAAGCGGACCGCTGCCCATCGTTCCCCGATCGAAGCGCCGCCACGCC GCACCGCGGTCTGGCGTGGGCCATGGCTGTGGTCCTGATCGGCGGGTGCGCCACTACCAGGGACATCGAGCAGCTGCAGA CCACCAGCCAGCGGGAGCCGACCAACGCGCAGCTCAAGCTCAAGTACATGGATGAGCGCGACCGCCAGGTCAAGGACTTG CTCGACGGGGCGGACCGGCTGCGCCTCATCCACGATTTCGACCGGGCCCAGGTCCTGCTCCTGCAAGCCCTGCGGCTGGA TCCGGGCAACGAGCGCGGCAGGCGCATCGCCGCCGCCATCGATGTGGACCGGCGCAACGGCGCCGTGCTCCAGGAAGCGG AGCGGATGATGGCGCGCGGCTCGTATGACGGCGCGGCCGAGCGCGTCGAGCGCGTGCTCGCGGAGACTCCGAACGATGCC GGCGCATTGCGCCTCTACCGCGAGATCAGCGAGAAGCGGCGCCTGCAAAAGCAGGCCGCCGAAGAGAAGAACGCCGCGGC GTCGATCATGCGCAAGCCGGTGTCGCTGCAGTTCCGGGATGCCAACGTGCGCATGGTGTTCGAAGCGCTGTCGCGCACGA CGGGCCTGAGCGTCATCTTCGATCGCGATGTGCGCGTCGATCTGAAGACCACGATCTTCGTCTCGAATGCCTCGCTCGAA GACACGGTCGACATGATCCTGCTGCAGAACCAGCTCGCGAAGAAGGTGCTCAACGCCAACACGGTGTTCATCTATCCGGC CACGCCGGCCAAGCAGCAGGAATACCAGGACCTCAAGGTGCGCACGTTCCAGCTGTCCAACACGGATGCCAAGCACATCG ACACGCTGCTGAAGAATCTCCTGAAGATCAAGGAGATCGTCACCGACGAGCGCGCCAATACCGTGTCGATCCGGGCGACG CCCGAGACCATCCGCGTGGCCGAGCGGATGATCGCCGCGCAGGATCTGCCCGAGCCGGAGGTGATGCTGGAAGTCGAGGT GCTGGAGGTGTCGCGCGACCGGCTCACCGATCTGGGCATCGACTGGCCGAACAGCTTCTCGCTCGGGACGCCGTCCTCGG CAAGCACGTGGGGCGCGCTGCATCACCTGACGGTCAATCAGCTCACGGCCAGCGGGCTGTCGGTGACGGCCAATCTCAAG CTGACCGATACCGACGCGAACCTGCTGGCGAGCCCGCGCATCCGCACGCGCAACAAGGAGAAGGCCAAGATCCTGATCGG CGACAAGGTGCCCGTGATCTCGAGCTCCAGCGTGCCGAGCACCAGCGGCCCGGTCTATTCGCAGTCGATCCAGTACCTGG ATGTCGGCATCAAGCTGGAGGTCGAGCCCCAGGTGTACCGGGACAACGATGTCGGCATCAAGATGAGCCTCGAGGTCAGC AACATCACCCAGATCATTTCGAGCAGCAACGCGCAGACCGGCCTGAGCTCGCTCGCTTACCAGATCGGCACCCGCAATGC GTCGACGACGCTGCGGCTCAAGGACGGCGAGACCCAGATTCTCGGCGGCCTGATCCAGGATGAGGATCGGGACGCGGCCA ACAAGGTCCCGGGGCTTGGGCAGTTGCCGGTGCTCGGGCGCCTGTTCTCGAACCACAACGGCGACCACAAGAAGACCGAG ATCGTGCTGCAGATCACGCCGCATATCGTGCGGCCGCAGCTGGCGGCGGATGCGGATACGCGCGAGATCTGGTCCGGCAC CGACAGCACTGTGCGCACCGAGCAATTGCGGCTCGATCCGCCGGGCGTGGCCGCGCCTGCCACACCTGCTGCGCCTGCTG CGCCTGCTGCGGCGCTTCCGGCGCCGGCCGCCGGGGTGGCGGTCGTCTCCCCGGGCGCCGTCGGCGGCGGTACCACGGGT GGCGAACAGACGCCCAAGGCTGCCGCGCCGGCCGCGGCCGGCGGCGTGGTTCCGCCCAACGGCGCGTTTGGGCAGCCGCC CGCCGCGCCGCGCACGACGCCGCCGCCGGCAATGTTCGGTGGCCGCTTCATGACCACGGTGCCGCCGCCCGAAGGGGTTG TGCCACCGGCGCCGCCGGCACCGGCAGCCGCGCCTGCGGCGGTGGCAGCGCCGGCAGCGGCGGCACCAGCAGCACCGGCG GCTGGCACGGCCGGGCCCGAGGCAGCGGCAGCGGTCAGCCCGACCGAGGCCGCACCGCCCGCACCCGCGCCGGCAGCGCC ATACACGCCAGCGCCCGCCGCGCCCGCCGCCGCGCCGCCAGCGGCATCGCCGCCGCCGATCGTGCCGACGCCGCCGAGCG ACATGCCGAGCGATAACCCGTTGCATCCGATCCCGACGGGGGCGTACTGA
Upstream 100 bases:
>100_bases GGTGTACCGATTCGAATCGATCGCGGCCACGGAAGCGCGCTTTACCTACCTGCCGCTCAACCAGCGGCAAGTGATGTCCG TTCAAGGCGAGGGGAACTAA
Downstream 100 bases:
>100_bases GCCATGGTCCGCCTGAGGGACCTCCACCTTGGCCGTGGCCGCGCGAACTGCCGCGGCCACGGCTTCACGCTGATCGAGCT CGTCATCACGCTTGCGCTGG
Product: GSPD-like protein
Products: NA
Alternate protein names: DNA transformation protein ComE [H]
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MKPSCRPGAALEADRCPSFPDRSAATPHRGLAWAMAVVLIGGCATTRDIEQLQTTSQREPTNAQLKLKYMDERDRQVKDL LDGADRLRLIHDFDRAQVLLLQALRLDPGNERGRRIAAAIDVDRRNGAVLQEAERMMARGSYDGAAERVERVLAETPNDA GALRLYREISEKRRLQKQAAEEKNAAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLKTTIFVSNASLE DTVDMILLQNQLAKKVLNANTVFIYPATPAKQQEYQDLKVRTFQLSNTDAKHIDTLLKNLLKIKEIVTDERANTVSIRAT PETIRVAERMIAAQDLPEPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSSASTWGALHHLTVNQLTASGLSVTANLK LTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVS NITQIISSSNAQTGLSSLAYQIGTRNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTE IVLQITPHIVRPQLAADADTREIWSGTDSTVRTEQLRLDPPGVAAPATPAAPAAPAAALPAPAAGVAVVSPGAVGGGTTG GEQTPKAAAPAAAGGVVPPNGAFGQPPAAPRTTPPPAMFGGRFMTTVPPPEGVVPPAPPAPAAAPAAVAAPAAAAPAAPA AGTAGPEAAAAVSPTEAAPPAPAPAAPYTPAPAAPAAAPPAASPPPIVPTPPSDMPSDNPLHPIPTGAY
Sequences:
>Translated_789_residues MKPSCRPGAALEADRCPSFPDRSAATPHRGLAWAMAVVLIGGCATTRDIEQLQTTSQREPTNAQLKLKYMDERDRQVKDL LDGADRLRLIHDFDRAQVLLLQALRLDPGNERGRRIAAAIDVDRRNGAVLQEAERMMARGSYDGAAERVERVLAETPNDA GALRLYREISEKRRLQKQAAEEKNAAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLKTTIFVSNASLE DTVDMILLQNQLAKKVLNANTVFIYPATPAKQQEYQDLKVRTFQLSNTDAKHIDTLLKNLLKIKEIVTDERANTVSIRAT PETIRVAERMIAAQDLPEPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSSASTWGALHHLTVNQLTASGLSVTANLK LTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVS NITQIISSSNAQTGLSSLAYQIGTRNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTE IVLQITPHIVRPQLAADADTREIWSGTDSTVRTEQLRLDPPGVAAPATPAAPAAPAAALPAPAAGVAVVSPGAVGGGTTG GEQTPKAAAPAAAGGVVPPNGAFGQPPAAPRTTPPPAMFGGRFMTTVPPPEGVVPPAPPAPAAAPAAVAAPAAAAPAAPA AGTAGPEAAAAVSPTEAAPPAPAPAAPYTPAPAAPAAAPPAASPPPIVPTPPSDMPSDNPLHPIPTGAY >Mature_789_residues MKPSCRPGAALEADRCPSFPDRSAATPHRGLAWAMAVVLIGGCATTRDIEQLQTTSQREPTNAQLKLKYMDERDRQVKDL LDGADRLRLIHDFDRAQVLLLQALRLDPGNERGRRIAAAIDVDRRNGAVLQEAERMMARGSYDGAAERVERVLAETPNDA GALRLYREISEKRRLQKQAAEEKNAAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLKTTIFVSNASLE DTVDMILLQNQLAKKVLNANTVFIYPATPAKQQEYQDLKVRTFQLSNTDAKHIDTLLKNLLKIKEIVTDERANTVSIRAT PETIRVAERMIAAQDLPEPEVMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSSASTWGALHHLTVNQLTASGLSVTANLK LTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVS NITQIISSSNAQTGLSSLAYQIGTRNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTE IVLQITPHIVRPQLAADADTREIWSGTDSTVRTEQLRLDPPGVAAPATPAAPAAPAAALPAPAAGVAVVSPGAVGGGTTG GEQTPKAAAPAAAGGVVPPNGAFGQPPAAPRTTPPPAMFGGRFMTTVPPPEGVVPPAPPAPAAAPAAVAAPAAAAPAAPA AGTAGPEAAAAVSPTEAAPPAPAPAAPYTPAPAAPAAAPPAASPPPIVPTPPSDMPSDNPLHPIPTGAY
Specific function: Involved in transformation (competence for DNA uptake) [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI1789793, Length=402, Percent_Identity=23.134328358209, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI87082242, Length=295, Percent_Identity=27.1186440677966, Blast_Score=83, Evalue=6e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR004846 - InterPro: IPR004845 - InterPro: IPR001814 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 83303; Mature: 83303
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPSCRPGAALEADRCPSFPDRSAATPHRGLAWAMAVVLIGGCATTRDIEQLQTTSQREP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC TNAQLKLKYMDERDRQVKDLLDGADRLRLIHDFDRAQVLLLQALRLDPGNERGRRIAAAI CCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE DVDRRNGAVLQEAERMMARGSYDGAAERVERVLAETPNDAGALRLYREISEKRRLQKQAA EECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH EEKNAAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLKTTIFVSNASLE HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEEECCCHH DTVDMILLQNQLAKKVLNANTVFIYPATPAKQQEYQDLKVRTFQLSNTDAKHIDTLLKNL HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCEEEEEEECCCCHHHHHHHHHHH LKIKEIVTDERANTVSIRATPETIRVAERMIAAQDLPEPEVMLEVEVLEVSRDRLTDLGI HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHCCC DWPNSFSLGTPSSASTWGALHHLTVNQLTASGLSVTANLKLTDTDANLLASPRIRTRNKE CCCCCCCCCCCCCCCHHHHHHEEEHHHHHCCCCEEEEEEEEECCCCCCEECCCCCCCCCC KAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVS CEEEEECCCCCEEECCCCCCCCCCCHHCCEEEEEEEEEEEECCCEEECCCCCEEEEEEHH NITQIISSSNAQTGLSSLAYQIGTRNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLG HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCHHHCCCCCC QLPVLGRLFSNHNGDHKKTEIVLQITPHIVRPQLAADADTREIWSGTDSTVRTEQLRLDP CCHHHHHHHHCCCCCCCEEEEEEEECCCHHCCCHHCCCCHHHHHCCCCCCEEEEEEEECC PGVAAPATPAAPAAPAAALPAPAAGVAVVSPGAVGGGTTGGEQTPKAAAPAAAGGVVPPN CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GAFGQPPAAPRTTPPPAMFGGRFMTTVPPPEGVVPPAPPAPAAAPAAVAAPAAAAPAAPA CCCCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC AGTAGPEAAAAVSPTEAAPPAPAPAAPYTPAPAAPAAAPPAASPPPIVPTPPSDMPSDNP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LHPIPTGAY CCCCCCCCC >Mature Secondary Structure MKPSCRPGAALEADRCPSFPDRSAATPHRGLAWAMAVVLIGGCATTRDIEQLQTTSQREP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC TNAQLKLKYMDERDRQVKDLLDGADRLRLIHDFDRAQVLLLQALRLDPGNERGRRIAAAI CCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE DVDRRNGAVLQEAERMMARGSYDGAAERVERVLAETPNDAGALRLYREISEKRRLQKQAA EECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH EEKNAAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLKTTIFVSNASLE HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEEECCCHH DTVDMILLQNQLAKKVLNANTVFIYPATPAKQQEYQDLKVRTFQLSNTDAKHIDTLLKNL HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCEEEEEEECCCCHHHHHHHHHHH LKIKEIVTDERANTVSIRATPETIRVAERMIAAQDLPEPEVMLEVEVLEVSRDRLTDLGI HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHCCC DWPNSFSLGTPSSASTWGALHHLTVNQLTASGLSVTANLKLTDTDANLLASPRIRTRNKE CCCCCCCCCCCCCCCHHHHHHEEEHHHHHCCCCEEEEEEEEECCCCCCEECCCCCCCCCC KAKILIGDKVPVISSSSVPSTSGPVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVS CEEEEECCCCCEEECCCCCCCCCCCHHCCEEEEEEEEEEEECCCEEECCCCCEEEEEEHH NITQIISSSNAQTGLSSLAYQIGTRNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLG HHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCCHHHCCCCCC QLPVLGRLFSNHNGDHKKTEIVLQITPHIVRPQLAADADTREIWSGTDSTVRTEQLRLDP CCHHHHHHHHCCCCCCCEEEEEEEECCCHHCCCHHCCCCHHHHHCCCCCCEEEEEEEECC PGVAAPATPAAPAAPAAALPAPAAGVAVVSPGAVGGGTTGGEQTPKAAAPAAAGGVVPPN CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GAFGQPPAAPRTTPPPAMFGGRFMTTVPPPEGVVPPAPPAPAAAPAAVAAPAAAAPAAPA CCCCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC AGTAGPEAAAAVSPTEAAPPAPAPAAPYTPAPAAPAAAPPAASPPPIVPTPPSDMPSDNP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LHPIPTGAY CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1916268; 7542800; 1856167 [H]