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The map label for this gene is ygaU [H]

Identifier: 17546867

GI number: 17546867

Start: 2331458

End: 2331940

Strand: Reverse

Name: ygaU [H]

Synonym: RSc2148

Alternate gene names: 17546867

Gene position: 2331940-2331458 (Counterclockwise)

Preceding gene: 17546869

Following gene: 17546866

Centisome position: 62.75

GC content: 62.73

Gene sequence:

>483_bases
ATGGGTTTTTTTGATTTCATCAAGGAAGCTGGCGAAAAACTGTTCCACGGCGGCGCAGCGGCACCGGCCGATGCCTCGGC
GGATGCGGATGCGGCCGAGGCTGCGAATCGCGCCAAGGGCGAAGCCATCGAGCAATACATCGCTCAGCAGGGCCTGACTG
CCACCGCATTGTCGGTGCAGGTGGACGGCGATCAGGCCAAGGTGTTCGGGGTGGCGGCCGACCAGGCGACGCGCGAGAAG
ATCATCCTGTGCTGCGGTAACGTGACGGGCATCCAGTCCGTCGACGACCAGATGTCGGTCAGCACGCAGGCGCCGGAGTC
GCAGTGGCATACGGTGGCCTCGGGCGACACGCTGTCGGCCATCGCCAAGAAGTTCTATGACGATGCCAACAAGTACCCGG
TGATTTTCGAGGCCAACAAGCCGATGCTGTCGGACCCGAACCGGATCTATCCGGGGCAGAAGCTGCGCATTCCGGCGGTG
TAA

Upstream 100 bases:

>100_bases
TCATGGAGACGTGCGGGTCGAGCGGCTACACTGCGGCGACGGGCGCGCTCCCGCTGTCTCGCGCCCGCCCTTTTTTCCCC
GTGTCTTTCAGGAGGTCCTC

Downstream 100 bases:

>100_bases
GCGAGCCGGATGTGGAAAGGACAAAAGCCAGGCGGACTGCCTGGCTTTTTTTATGCTCCCGTGCCGGAGAGGGGCACGCC
TTTGGCGCGGGTGGGAAGGC

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MGFFDFIKEAGEKLFHGGAAAPADASADADAAEAANRAKGEAIEQYIAQQGLTATALSVQVDGDQAKVFGVAADQATREK
IILCCGNVTGIQSVDDQMSVSTQAPESQWHTVASGDTLSAIAKKFYDDANKYPVIFEANKPMLSDPNRIYPGQKLRIPAV

Sequences:

>Translated_160_residues
MGFFDFIKEAGEKLFHGGAAAPADASADADAAEAANRAKGEAIEQYIAQQGLTATALSVQVDGDQAKVFGVAADQATREK
IILCCGNVTGIQSVDDQMSVSTQAPESQWHTVASGDTLSAIAKKFYDDANKYPVIFEANKPMLSDPNRIYPGQKLRIPAV
>Mature_159_residues
GFFDFIKEAGEKLFHGGAAAPADASADADAAEAANRAKGEAIEQYIAQQGLTATALSVQVDGDQAKVFGVAADQATREKI
ILCCGNVTGIQSVDDQMSVSTQAPESQWHTVASGDTLSAIAKKFYDDANKYPVIFEANKPMLSDPNRIYPGQKLRIPAV

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=159, Percent_Identity=43.3962264150943, Blast_Score=132, Evalue=9e-33,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 16938; Mature: 16807

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFFDFIKEAGEKLFHGGAAAPADASADADAAEAANRAKGEAIEQYIAQQGLTATALSVQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEE
VDGDQAKVFGVAADQATREKIILCCGNVTGIQSVDDQMSVSTQAPESQWHTVASGDTLSA
ECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCEECCCCCHHHH
IAKKFYDDANKYPVIFEANKPMLSDPNRIYPGQKLRIPAV
HHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure 
GFFDFIKEAGEKLFHGGAAAPADASADADAAEAANRAKGEAIEQYIAQQGLTATALSVQ
CHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEE
VDGDQAKVFGVAADQATREKIILCCGNVTGIQSVDDQMSVSTQAPESQWHTVASGDTLSA
ECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCEECCCCCHHHH
IAKKFYDDANKYPVIFEANKPMLSDPNRIYPGQKLRIPAV
HHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]