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The map label for this gene is yckA [H]

Identifier: 17546824

GI number: 17546824

Start: 2279975

End: 2280628

Strand: Direct

Name: yckA [H]

Synonym: RSc2105

Alternate gene names: 17546824

Gene position: 2279975-2280628 (Clockwise)

Preceding gene: 17546823

Following gene: 17546825

Centisome position: 61.35

GC content: 63.61

Gene sequence:

>654_bases
ATGATTGCCGATATCCCTTTGCTGCCCATCCTCCTCAAACTCAGTGAGGGGCTGCTTGCCACGCTGTTGCTGTCGTTGAT
GGCCTTCGCTCTGGGTGGCGCGGCGGGCCTCGCCGTGCTGTTTGCCCGCGTCGGGCGTAACGCAGGCCTGCAGCGCGTGA
GTCAGGTCTACATCCAGATCTTCCAGAACACGCCGCTGCTGATGCAGATGTTCCTGGTGTTCTTTGGCGCGTCGATGGCG
GGCCTGGAGATGTCGCCATGGACTGCCGCCGCCATCGGCCTGACGCTGTACACCAGCGCCTACCTGGCAGAAGTGTGGCG
CGGCTGCGTGGAGGCCATTCCGCGCGGGCAGTGGGAAGCCTCCGCCAGCCTCGCCATGGGTTACTTCCAGCAGATGCGGC
ATGTGGTGCTGCCGCAGGCCGTGCGCATGTCGATTGCACCCACCGTGGGGTTCTCCGTGCAGATCGTCAAAGGCACGGCG
GTGGCGTCCATCATCGGGTTTGAAGACCTGACCAAGCTGGGCTCCGTGCTGGCCAACGCCACCTTCCAGCCTTTCCTCAT
CTACGGGCTGGTCGGCATGGCGTACTTGGCGCTGTGCTGGCCGCTGTCCCTCTGTGCCTCTCACCTGGAAAAGAAGCTCT
ATGCCGCTCGTTGA

Upstream 100 bases:

>100_bases
GCTTTGTCGTGGTTCGCCGCACACCGGCTGCACCTGCCTCAGCGGCCGCACCTGCGGCAGCACGCACAGCCACAGCCACC
ACCTCAGCCCGGAACGCCGC

Downstream 100 bases:

>100_bases
TCTCTGCGCCGTACACAAGCACTACGGCAACAACCATGTCCTCAAGGGCGTGGACCTGCGCGTCGAAAGCGGCCAGGTGG
TCGCCATCATTGGGCGCAGC

Product: amino-acid transmembrane ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIADIPLLPILLKLSEGLLATLLLSLMAFALGGAAGLAVLFARVGRNAGLQRVSQVYIQIFQNTPLLMQMFLVFFGASMA
GLEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEASASLAMGYFQQMRHVVLPQAVRMSIAPTVGFSVQIVKGTA
VASIIGFEDLTKLGSVLANATFQPFLIYGLVGMAYLALCWPLSLCASHLEKKLYAAR

Sequences:

>Translated_217_residues
MIADIPLLPILLKLSEGLLATLLLSLMAFALGGAAGLAVLFARVGRNAGLQRVSQVYIQIFQNTPLLMQMFLVFFGASMA
GLEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEASASLAMGYFQQMRHVVLPQAVRMSIAPTVGFSVQIVKGTA
VASIIGFEDLTKLGSVLANATFQPFLIYGLVGMAYLALCWPLSLCASHLEKKLYAAR
>Mature_217_residues
MIADIPLLPILLKLSEGLLATLLLSLMAFALGGAAGLAVLFARVGRNAGLQRVSQVYIQIFQNTPLLMQMFLVFFGASMA
GLEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEASASLAMGYFQQMRHVVLPQAVRMSIAPTVGFSVQIVKGTA
VASIIGFEDLTKLGSVLANATFQPFLIYGLVGMAYLALCWPLSLCASHLEKKLYAAR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=33.9805825242718, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=30.4761904761905, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=32.0574162679426, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=28.3653846153846, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787086, Length=166, Percent_Identity=28.9156626506024, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1788646, Length=209, Percent_Identity=25.8373205741627, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994930, Length=136, Percent_Identity=33.8235294117647, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786873, Length=216, Percent_Identity=24.0740740740741, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786874, Length=211, Percent_Identity=24.6445497630332, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23334; Mature: 23334

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIADIPLLPILLKLSEGLLATLLLSLMAFALGGAAGLAVLFARVGRNAGLQRVSQVYIQI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
FQNTPLLMQMFLVFFGASMAGLEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEA
HCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
SASLAMGYFQQMRHVVLPQAVRMSIAPTVGFSVQIVKGTAVASIIGFEDLTKLGSVLANA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
TFQPFLIYGLVGMAYLALCWPLSLCASHLEKKLYAAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIADIPLLPILLKLSEGLLATLLLSLMAFALGGAAGLAVLFARVGRNAGLQRVSQVYIQI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
FQNTPLLMQMFLVFFGASMAGLEMSPWTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEA
HCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
SASLAMGYFQQMRHVVLPQAVRMSIAPTVGFSVQIVKGTAVASIIGFEDLTKLGSVLANA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
TFQPFLIYGLVGMAYLALCWPLSLCASHLEKKLYAAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]