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The map label for this gene is nodJ [H]

Identifier: 17546694

GI number: 17546694

Start: 2149355

End: 2150179

Strand: Direct

Name: nodJ [H]

Synonym: RSc1975

Alternate gene names: 17546694

Gene position: 2149355-2150179 (Clockwise)

Preceding gene: 17546693

Following gene: 17546717

Centisome position: 57.83

GC content: 66.55

Gene sequence:

>825_bases
ATGATGCCCTCCGAAGCCACCCTCACCGCCCCGGCGCAGCAAGCGTATCCGCAGTCCCTGCTGCCGCTCAATTTCAGCAA
CTGGCGCTATGTCTGGCTGCGCAACTTCATGGTGTGGCGCAAGCTGGCAATCCCGTCGATGGCGGGCAACCTGGCCGACC
CCATGATCTACCTGTTCGGCCTGGGCATGGGCCTCGGCTTGCTGGTCGGCCGCCTGGACGGCGTGTCGTACATCGCCTTT
CTGGCGGCGGGCACGGTGGCCTCGAGCACGATGATGTCGGCGAGCTTCGAGGCGATGTATTCAGCGTTTTCGCGCATGCA
CGTGCAGCGCACCTGGGAGGCCATCCTCTACGCCCCGCTCACCCTCGGCGACGTGGTGCTCGGCGAGCTGCTGTGGGCAG
CCAGCAAGTCGGTGCTGTCGGGCCTGGCGATCATGCTGGTGGCCGGCGTGCTGGGCTACGCATCGATGCCGCAGGCGCTG
CTGGCGCTGCCGGTGGTCGTGCTGACCGGCTTCACCTTCGCCTGCCTGGCCATGAACATGACGGCGCTGGCGCCCAACTA
CGACTTCTTCATGTTCTACCAGACGCTGGTAATCACGCCGATGATGCTGCTCTCGGGCGTGTTCTTCCCGCTGTCGCAGT
TGCCGGCGCCGATCCGCGCCGTCACCAGCCTGCTGCCGCTGCCGCACGCGGTCGAGCTGATCCGCCCGCTGATGCTCGGC
CGCACGCCGGACGACATCCTGCTGCACCTGGGCGTGCTCGTGCTCTATACCGTGGTCGCGCTGTGGTTGTGCCTGTGGCT
GCTGCGCCGTCGCATGCTGAAGTGA

Upstream 100 bases:

>100_bases
CCGGCCTGCGCTACCTGCACCGCCCGGCCAACCTCGAAGATGTGTTCCTGCGCCTGACCGGCCGCGAGATGCGCGACTGA
GCCGAAACGAACGCGAGACA

Downstream 100 bases:

>100_bases
TGCCCTCGTCCGCTGCATGAAAAAAGCCCGTCACCAGGACGGGCTTTTTGCTGGAGACCAGTACACGAAAACAGCAGCGC
ACAGCCCATGGGCCGGGTGC

Product: transmembrane permease ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MMPSEATLTAPAQQAYPQSLLPLNFSNWRYVWLRNFMVWRKLAIPSMAGNLADPMIYLFGLGMGLGLLVGRLDGVSYIAF
LAAGTVASSTMMSASFEAMYSAFSRMHVQRTWEAILYAPLTLGDVVLGELLWAASKSVLSGLAIMLVAGVLGYASMPQAL
LALPVVVLTGFTFACLAMNMTALAPNYDFFMFYQTLVITPMMLLSGVFFPLSQLPAPIRAVTSLLPLPHAVELIRPLMLG
RTPDDILLHLGVLVLYTVVALWLCLWLLRRRMLK

Sequences:

>Translated_274_residues
MMPSEATLTAPAQQAYPQSLLPLNFSNWRYVWLRNFMVWRKLAIPSMAGNLADPMIYLFGLGMGLGLLVGRLDGVSYIAF
LAAGTVASSTMMSASFEAMYSAFSRMHVQRTWEAILYAPLTLGDVVLGELLWAASKSVLSGLAIMLVAGVLGYASMPQAL
LALPVVVLTGFTFACLAMNMTALAPNYDFFMFYQTLVITPMMLLSGVFFPLSQLPAPIRAVTSLLPLPHAVELIRPLMLG
RTPDDILLHLGVLVLYTVVALWLCLWLLRRRMLK
>Mature_274_residues
MMPSEATLTAPAQQAYPQSLLPLNFSNWRYVWLRNFMVWRKLAIPSMAGNLADPMIYLFGLGMGLGLLVGRLDGVSYIAF
LAAGTVASSTMMSASFEAMYSAFSRMHVQRTWEAILYAPLTLGDVVLGELLWAASKSVLSGLAIMLVAGVLGYASMPQAL
LALPVVVLTGFTFACLAMNMTALAPNYDFFMFYQTLVITPMMLLSGVFFPLSQLPAPIRAVTSLLPLPHAVELIRPLMLG
RTPDDILLHLGVLVLYTVVALWLCLWLLRRRMLK

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=243, Percent_Identity=22.2222222222222, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30142; Mature: 30142

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]