| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17546633
Identifier: 17546633
GI number: 17546633
Start: 2094395
End: 2097058
Strand: Reverse
Name: 17546633
Synonym: RSc1914
Alternate gene names: NA
Gene position: 2097058-2094395 (Counterclockwise)
Preceding gene: 17546634
Following gene: 17546632
Centisome position: 56.43
GC content: 68.06
Gene sequence:
>2664_bases ATGAGCGACGCCCGCCGCCTGCGCCTGGAGGTGGTGCTGGCCGCCGTGGACAAGGCCACGCGGCCGCTGCGCAACCTGAT GAACGCCAACAACGACCTGGCCCGGGCCGTGAAGGCCACGCGCGCGCAGCTCAAGGACCTGGAACGCACACAGGCCAGCA TCGACACCTTCCGCAAGCTGTCGCGGGACGCGGCCATCACCGGCAACCAACTGAAGGCGGTGCGCGGGCGGGCGGATGAG CTGGCCCGCCAGCTCAAGCAGACCAGCGAGCCATCTGCCGCGCTCTCAAAAGCATTCGAGGCCGCCCGGCGCGAGGCGCA GGCGCTCAAGTCAAAGCAATCGGAATTGTCTGAAAAACTGCACCAGGTGCGCGGGCGGTTGTCCGAGGCCGGCATCGGCA CGCAGAGCCTCGCGGAGCACCAGCGTGCGCTCAAGACCCGCATTGCCGAGACCAACCAGCAACTGGAGGCGCAGACCCAG CGCATGGCGGCCGTGACCGCGCAGCAGCGCCGCATGGCCACCGCGCACCAGGCAGCGGACAAGGTGCGTGCCAAGGCCGG CAGCCTGGCCGCCGCCGGCGCGGGCGCCACCGCAGCCGGCGTGGCGGCCGGTGCTCCGTTGCTCAAGGGCCTGGGGGAAG CCAAGCACTACGACCTGGAGAAGTTGCGCATTGGCGCGCTGGGCCTGGGTGACCAGTCGACCAAGGAAGCGCTGGCGTTC GCGCAGCAGATGAAGGCGTACGGCGTCAGCCAGGTTGAGAAGGCCGAACTGATGCGCGACGCCATGAGCGTGTTCGCGGA CACCCACCACGCCGAAATGGTGATGCCGACGCTCGCCAAGATGAAGTTCGCCAACGCGGCCGTGTTCGGCCAGGCCGAGG GCGCGGAGAACGAGCGCAAGTTCGTGGACATGCTCAAGGTCATTGAGCTGCGCGGCGGCTTGGCAAGCGAGGCCGAGTTC AAGAAGCAGGCCGACATGGTCCAGAAGGTCATCACGGCGACCGGCGGGCGCGTGCAGGCTGACGAATGGCTCAACGTCAT TAAGACAGGTGGCCTCGCCGCCAAGGGCGCCGATGACAAGGCGTTCTACTACACGCTGGAACCGCTGGTGCAGGAGATGG GCGGCAACCGCGTGGGCACCGCCATGATGAGCGCCTATCAGAACCTGTACCAAGGCAAGACGACGAAGCGGGCGCTGCAC AACCTGGACAAGTTCGGCCTGATCGCCGACCGGAGCAAGGTGCAGGAGGACAAGGCCGGCCAGGTGTCGTTCATGGACCC GGGCGCACTCAAGGGCGCGGACCTGTTCCGGCAGAACCAGTTCGCCTGGTTGGAGCAGGTGCTGCTGCCGACGCTGGCTG CCAAGGGGATCACCCGTCGCAAGCAGATCGAGGACGCAATCGGCAGCGTCTTTTCGAACCGCACGGCGTCGGGCCTGTTC GCGCAGATGTACATGCAGCGGGAACAGATCCACAAGAACATGCGCCTGAACGAAGGCGCTGCCGGCATCGATCAGCTTGA AGCCACTGCAAAGGGCACTGCCCAAGGCCAGGAGCTGGACACGCTGGCGAAGGTGCACGACCTGGAGAAGGCGCTGGGCG AAAAGGTGTTGCCGCTGTATGCGCGCGGCCTGGAACTGGTCGGCAAGGCCGCCGAGGGCGTCACCTCGTTCATGCAGAAC CACCCAACGCTGGCCAAGGCCGTCGCCGTCGCGGTCGGCGCGCTGGCGGCTTCCCTGCTGGTGCTGGGGCCGATCATGCT GGCCGTGGCGTCCGTGCTGGGGCCCTACGCCATGCTGCACATCTTGTGCGCCAGGCTGGGCGTTACGGGCGGCGTGCTGT CGGGCGTGTTGCGTGGTCTGGCGGGTGCCTTCAGCGTAGTCATGCGCGCCGTGGCGGTGCTGGGCCGGGTGCTGCTGATG AACCCGATTGGCCTGCTGGTGACGGCAATTGCGGTCGCGGCCTACCTGATCTACCGGAACTGGGAGCCGATCAGCGAGTT CTTCTCGGGGTTGTGGCAGCAGGTGAAGACGGCGTTCGACGGCGGTATCGCCGGCGTGTCCGCGCTGATCCTGAACTGGT CGCCGGCAGGCCTGTTCTACGCCGCGCTCGCGCCGGTGTTGCAGTGGTTCGGGTTCGACGTGCCGGCCAAGTTCACCGAG TTCGGCGCCAACATCGTGCAGGGCCTGGCCAACGGCATCCGCAGCGCCATCGGCTGGGTCACGGATGCCGTGGGCAGCGT GGCAAGCGGTGCGATCGCGGCCTTCAAGAGCCTGATGGGCATCCACTCGCCGTCCCGCGTCTTCGCCGAGTTGGGCGGGT TCACCATGGCCGGGCTCGGCGAAGGCCTCACGCGCGGTCAGGAGGGGCCGCTGCAGGCCGTTCAGCGGGTGGCCGCCAGG ATGACCGGTATCGGCGCCGGCATCGCCATCGGTGCGGCGCCGGCCGTCGCATCGCCGGTGCGCTTCGACACCCGGCCGCC GCTGGCCGCCAGCTCGGTCTCTGGCACCGCGGCGCCGGCTGCCGCCGCGCCCATCACCATCGTCATCAACCCGCCGGCGG GTAGCGATGAACGGCTGATTGCGCGCCTGGTGGAAGACCGGCTGCGCCAGATCGAGAACCAACGCGCGGCGCGTGGACGC TCGCGCCTCACCGATACGGATTGA
Upstream 100 bases:
>100_bases GCGTGATTTTCTCGTTCCGCCTGGAGGAGCTGTACGCCATGGGCATCGTGGAGCTGATGGAGTGGCGCGAGCGCGCACGC GAACGTAGCGGGGCCGAGGA
Downstream 100 bases:
>100_bases CCATGATGATGGCACTGGGGCTGTTTGTGTTCAGCCTGGACACGGCCCCCTACCAGGAGTTTCAGCGCCAGGTCGGCTGG CGGCACCCGTCGAACAACCG
Product: phage-related tail transmembrane protein
Products: NA
Alternate protein names: Phage Tail Protein; Bacteriophage Tail Protein; Phage-Related Membrane Protein; Phage-Related Tail Protein; Phage-Related Tail Transmembrane Protein; Phage Membrane Protein; Phage Tail Tape Measure Protein Family; Bacteriophage P2 Tail Protein GPT; Tail Length Tape Measure Protein; Phage Tail Tape Measure Core Region; Phage Tail Fiber Protein; Prophage; Phage TMP Domain-Containing Protein; Phage-Encoded Membrane Protein; Prophage Tail Length Determinator; Phage Tail-Like Protein; Phage Minor Tail Protein; Tail Fiber Protein T; Gp29 Bacteriophage Membrane Protein; Bacteriophage Protein; Bacteriophage-Related Tail Transmembrane Protein; Fels-2 Prophage Protein; Bacteriophage Membrane Protein; Bacteriophage P2 Tail Protein GpT; Bacteriophage V Tail Protein; Phage Tail Tape-Measure Protein; Bacteriophage Tail Protein/Phage Tail Tape Measure Protein; Myosin Heavy Chain Striated; Phage Tail Tape Measure Protein Core Region
Number of amino acids: Translated: 887; Mature: 886
Protein sequence:
>887_residues MSDARRLRLEVVLAAVDKATRPLRNLMNANNDLARAVKATRAQLKDLERTQASIDTFRKLSRDAAITGNQLKAVRGRADE LARQLKQTSEPSAALSKAFEAARREAQALKSKQSELSEKLHQVRGRLSEAGIGTQSLAEHQRALKTRIAETNQQLEAQTQ RMAAVTAQQRRMATAHQAADKVRAKAGSLAAAGAGATAAGVAAGAPLLKGLGEAKHYDLEKLRIGALGLGDQSTKEALAF AQQMKAYGVSQVEKAELMRDAMSVFADTHHAEMVMPTLAKMKFANAAVFGQAEGAENERKFVDMLKVIELRGGLASEAEF KKQADMVQKVITATGGRVQADEWLNVIKTGGLAAKGADDKAFYYTLEPLVQEMGGNRVGTAMMSAYQNLYQGKTTKRALH NLDKFGLIADRSKVQEDKAGQVSFMDPGALKGADLFRQNQFAWLEQVLLPTLAAKGITRRKQIEDAIGSVFSNRTASGLF AQMYMQREQIHKNMRLNEGAAGIDQLEATAKGTAQGQELDTLAKVHDLEKALGEKVLPLYARGLELVGKAAEGVTSFMQN HPTLAKAVAVAVGALAASLLVLGPIMLAVASVLGPYAMLHILCARLGVTGGVLSGVLRGLAGAFSVVMRAVAVLGRVLLM NPIGLLVTAIAVAAYLIYRNWEPISEFFSGLWQQVKTAFDGGIAGVSALILNWSPAGLFYAALAPVLQWFGFDVPAKFTE FGANIVQGLANGIRSAIGWVTDAVGSVASGAIAAFKSLMGIHSPSRVFAELGGFTMAGLGEGLTRGQEGPLQAVQRVAAR MTGIGAGIAIGAAPAVASPVRFDTRPPLAASSVSGTAAPAAAAPITIVINPPAGSDERLIARLVEDRLRQIENQRAARGR SRLTDTD
Sequences:
>Translated_887_residues MSDARRLRLEVVLAAVDKATRPLRNLMNANNDLARAVKATRAQLKDLERTQASIDTFRKLSRDAAITGNQLKAVRGRADE LARQLKQTSEPSAALSKAFEAARREAQALKSKQSELSEKLHQVRGRLSEAGIGTQSLAEHQRALKTRIAETNQQLEAQTQ RMAAVTAQQRRMATAHQAADKVRAKAGSLAAAGAGATAAGVAAGAPLLKGLGEAKHYDLEKLRIGALGLGDQSTKEALAF AQQMKAYGVSQVEKAELMRDAMSVFADTHHAEMVMPTLAKMKFANAAVFGQAEGAENERKFVDMLKVIELRGGLASEAEF KKQADMVQKVITATGGRVQADEWLNVIKTGGLAAKGADDKAFYYTLEPLVQEMGGNRVGTAMMSAYQNLYQGKTTKRALH NLDKFGLIADRSKVQEDKAGQVSFMDPGALKGADLFRQNQFAWLEQVLLPTLAAKGITRRKQIEDAIGSVFSNRTASGLF AQMYMQREQIHKNMRLNEGAAGIDQLEATAKGTAQGQELDTLAKVHDLEKALGEKVLPLYARGLELVGKAAEGVTSFMQN HPTLAKAVAVAVGALAASLLVLGPIMLAVASVLGPYAMLHILCARLGVTGGVLSGVLRGLAGAFSVVMRAVAVLGRVLLM NPIGLLVTAIAVAAYLIYRNWEPISEFFSGLWQQVKTAFDGGIAGVSALILNWSPAGLFYAALAPVLQWFGFDVPAKFTE FGANIVQGLANGIRSAIGWVTDAVGSVASGAIAAFKSLMGIHSPSRVFAELGGFTMAGLGEGLTRGQEGPLQAVQRVAAR MTGIGAGIAIGAAPAVASPVRFDTRPPLAASSVSGTAAPAAAAPITIVINPPAGSDERLIARLVEDRLRQIENQRAARGR SRLTDTD >Mature_886_residues SDARRLRLEVVLAAVDKATRPLRNLMNANNDLARAVKATRAQLKDLERTQASIDTFRKLSRDAAITGNQLKAVRGRADEL ARQLKQTSEPSAALSKAFEAARREAQALKSKQSELSEKLHQVRGRLSEAGIGTQSLAEHQRALKTRIAETNQQLEAQTQR MAAVTAQQRRMATAHQAADKVRAKAGSLAAAGAGATAAGVAAGAPLLKGLGEAKHYDLEKLRIGALGLGDQSTKEALAFA QQMKAYGVSQVEKAELMRDAMSVFADTHHAEMVMPTLAKMKFANAAVFGQAEGAENERKFVDMLKVIELRGGLASEAEFK KQADMVQKVITATGGRVQADEWLNVIKTGGLAAKGADDKAFYYTLEPLVQEMGGNRVGTAMMSAYQNLYQGKTTKRALHN LDKFGLIADRSKVQEDKAGQVSFMDPGALKGADLFRQNQFAWLEQVLLPTLAAKGITRRKQIEDAIGSVFSNRTASGLFA QMYMQREQIHKNMRLNEGAAGIDQLEATAKGTAQGQELDTLAKVHDLEKALGEKVLPLYARGLELVGKAAEGVTSFMQNH PTLAKAVAVAVGALAASLLVLGPIMLAVASVLGPYAMLHILCARLGVTGGVLSGVLRGLAGAFSVVMRAVAVLGRVLLMN PIGLLVTAIAVAAYLIYRNWEPISEFFSGLWQQVKTAFDGGIAGVSALILNWSPAGLFYAALAPVLQWFGFDVPAKFTEF GANIVQGLANGIRSAIGWVTDAVGSVASGAIAAFKSLMGIHSPSRVFAELGGFTMAGLGEGLTRGQEGPLQAVQRVAARM TGIGAGIAIGAAPAVASPVRFDTRPPLAASSVSGTAAPAAAAPITIVINPPAGSDERLIARLVEDRLRQIENQRAARGRS RLTDTD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94107; Mature: 93975
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDARRLRLEVVLAAVDKATRPLRNLMNANNDLARAVKATRAQLKDLERTQASIDTFRKL CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRDAAITGNQLKAVRGRADELARQLKQTSEPSAALSKAFEAARREAQALKSKQSELSEKL HHHHCCCCCHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HQVRGRLSEAGIGTQSLAEHQRALKTRIAETNQQLEAQTQRMAAVTAQQRRMATAHQAAD HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KVRAKAGSLAAAGAGATAAGVAAGAPLLKGLGEAKHYDLEKLRIGALGLGDQSTKEALAF HHHHHHCCCHHCCCCCHHHHHHHCCHHHHHCCHHHCCCHHHHHCCCCCCCCCHHHHHHHH AQQMKAYGVSQVEKAELMRDAMSVFADTHHAEMVMPTLAKMKFANAAVFGQAEGAENERK HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH FVDMLKVIELRGGLASEAEFKKQADMVQKVITATGGRVQADEWLNVIKTGGLAAKGADDK HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCC AFYYTLEPLVQEMGGNRVGTAMMSAYQNLYQGKTTKRALHNLDKFGLIADRSKVQEDKAG HHEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC QVSFMDPGALKGADLFRQNQFAWLEQVLLPTLAAKGITRRKQIEDAIGSVFSNRTASGLF CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHH AQMYMQREQIHKNMRLNEGAAGIDQLEATAKGTAQGQELDTLAKVHDLEKALGEKVLPLY HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ARGLELVGKAAEGVTSFMQNHPTLAKAVAVAVGALAASLLVLGPIMLAVASVLGPYAMLH HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILCARLGVTGGVLSGVLRGLAGAFSVVMRAVAVLGRVLLMNPIGLLVTAIAVAAYLIYRN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC WEPISEFFSGLWQQVKTAFDGGIAGVSALILNWSPAGLFYAALAPVLQWFGFDVPAKFTE CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH FGANIVQGLANGIRSAIGWVTDAVGSVASGAIAAFKSLMGIHSPSRVFAELGGFTMAGLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH EGLTRGQEGPLQAVQRVAARMTGIGAGIAIGAAPAVASPVRFDTRPPLAASSVSGTAAPA HHHCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC AAAPITIVINPPAGSDERLIARLVEDRLRQIENQRAARGRSRLTDTD CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SDARRLRLEVVLAAVDKATRPLRNLMNANNDLARAVKATRAQLKDLERTQASIDTFRKL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRDAAITGNQLKAVRGRADELARQLKQTSEPSAALSKAFEAARREAQALKSKQSELSEKL HHHHCCCCCHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HQVRGRLSEAGIGTQSLAEHQRALKTRIAETNQQLEAQTQRMAAVTAQQRRMATAHQAAD HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KVRAKAGSLAAAGAGATAAGVAAGAPLLKGLGEAKHYDLEKLRIGALGLGDQSTKEALAF HHHHHHCCCHHCCCCCHHHHHHHCCHHHHHCCHHHCCCHHHHHCCCCCCCCCHHHHHHHH AQQMKAYGVSQVEKAELMRDAMSVFADTHHAEMVMPTLAKMKFANAAVFGQAEGAENERK HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH FVDMLKVIELRGGLASEAEFKKQADMVQKVITATGGRVQADEWLNVIKTGGLAAKGADDK HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCCC AFYYTLEPLVQEMGGNRVGTAMMSAYQNLYQGKTTKRALHNLDKFGLIADRSKVQEDKAG HHEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC QVSFMDPGALKGADLFRQNQFAWLEQVLLPTLAAKGITRRKQIEDAIGSVFSNRTASGLF CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHH AQMYMQREQIHKNMRLNEGAAGIDQLEATAKGTAQGQELDTLAKVHDLEKALGEKVLPLY HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH ARGLELVGKAAEGVTSFMQNHPTLAKAVAVAVGALAASLLVLGPIMLAVASVLGPYAMLH HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILCARLGVTGGVLSGVLRGLAGAFSVVMRAVAVLGRVLLMNPIGLLVTAIAVAAYLIYRN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC WEPISEFFSGLWQQVKTAFDGGIAGVSALILNWSPAGLFYAALAPVLQWFGFDVPAKFTE CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH FGANIVQGLANGIRSAIGWVTDAVGSVASGAIAAFKSLMGIHSPSRVFAELGGFTMAGLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH EGLTRGQEGPLQAVQRVAARMTGIGAGIAIGAAPAVASPVRFDTRPPLAASSVSGTAAPA HHHCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC AAAPITIVINPPAGSDERLIARLVEDRLRQIENQRAARGRSRLTDTD CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA