Definition Ralstonia solanacearum GMI1000, complete genome.
Accession NC_003295
Length 3,716,413

Click here to switch to the map view.

The map label for this gene is fyuA [H]

Identifier: 17546526

GI number: 17546526

Start: 1958894

End: 1960969

Strand: Direct

Name: fyuA [H]

Synonym: RSc1807

Alternate gene names: 17546526

Gene position: 1958894-1960969 (Clockwise)

Preceding gene: 17546520

Following gene: 17546527

Centisome position: 52.71

GC content: 69.51

Gene sequence:

>2076_bases
ATGGGGGTGAGTACGTTGAGGGGCCTGCTGCTGGCGGGCAGCACGCTGGGCGCGGTGGGGGCGGCCGGCGCGCAGGACAG
CGCCACGGCGGCCGAACCGGCGGACGTGGCGCAACTGGCGCCGGTGGTGGTGACGGGCACCAAGCTCGATGCCAGCGGGC
AGACCGCCGACAGCGCCACGTCGGTGGCCAGCGGTGCGCGCCTGCAGGCGGCCGGGGTGGCGCGCACCGACGAACTGGGC
AAGCTGTTTCCCGAGCTGACGGTCACGCCCCGCAGTTCGCGCGCGTACACGCTGTTCGGCATGCGCGGGACGCCGTCGTC
CGACTTCTACAGCCCGGCGGTGACGGTCTACGTCGACGGCGTGCCGCAGGACATGGCCTACTTCACGCAGCCGCTGCCGG
ACGTCGAGCAGGTCGAGGTCCTGCGGGGGCCGCAGGGCACGCTGTATGGCCGCGCCGCGCAGGGCGGCGTGATCAACATC
GTGACGACGAAGCCGAACAACCGCTTCGGCGCCCAGGCGAGCGTCGACGTCAACAACCTGACGCGGCGCACCGATCTGTC
GGTGCGCGGGCCGCTGGTCAAGGACCTCCTGTATGGCGACGTGTCCGCCTATTTCGACGACCGCCCGGGCACGCTGAAGA
ACCCGGCCACCGGTGCCGACCAGCTCGATTCCGGCCGCGAGGCCCTGGGCCGCGCACGGCTGCGCTGGACACCGCGGGAC
ACCGACCTCGACGCCACGCTGTCGGTGAGCCACGACCGCTACCGCTCGCACGAAGAATACTTCCAGGCCTATGACCTGAA
AGACCGGCACGCCATCGCGTCATCGCCGTTCGATCTGACCGAACCGTCGCTCACGCGCACTGTCACGCAGGCGGCGCTCA
GCGTCGACTACTACCTGCGGGGTTGGAAGCTGTCGTCGGTCAGCGCCTACCAGGACCGCCGGCTCGAGCGCGTGCTGACC
ACTGGCAACGCCGATCCGGAAAACCAGAAGACCTTCTCGCAGGAACTGCGCGTCGCCACCTCCGGCGACGTCAAGCGCCC
GGTGGATGGCGTGTTCGGCCTCTATTACGAGAAGCAGGCATTCGAGCGCGATCGGGGCATCGCGGTGCCTGGCGTGTCGG
CGTTCCTGTTCCCCGGCCCGAGCCGCAGCGAGTCGAACCTGCGCTCGATGGCCGCCTTCGGCGAGGGCGTATGGCACGCC
ACCGAGCGGCTCGACCTGACGGCCGGGCTGCGCTACGGCATCGACAGCGCCGACATCCACTACAACCGCACCGGCGCGGC
CGCGCTGTCCTTCGCCGGCGACAAGACGTTCCGCAGCCTGACCCCGAAAGTGTCGGTGGGCTACCAGGCAGCGCCCGGGT
GGCGCGTGTACGGCCTGTACAGCGAAGGCTACAAGGCCGGGGGCTTCAACCGCATCGCCGACAACAGCGCCGGCAGCATT
CCGTACAGCGCCGAGCGGCTGCGCAACGTCGAGGTCGGCTTCCAGGCCGATCTGCTCGGCAAGCGGCTGCGGCTGGACGG
CGCGCTGTTCCACAGCCGCACCAGCAATCTGCAGGCGCAGGTCGTCTCGGGCCTGTTCCAGATGCTGAGCAACGTGGGCG
ATGCCCGCGCCACCGGCGTGGAGCTGAACGGCACCTGGCTGGCCACGCCGGACCTCACGCTGCGCGCCGGCGGCGCCTGG
ACCACCAGCAAGATCTACAGCTACAGCGCGCCGCAGGGCAATCTCGACCTGACCGGCAAGCGCGTGCCCTACGTGGTGCC
GCTGAGCCTGCGCGCCTCGGGCGAATACCGCTTCCGTCCGCAAGGGATGCGGGGTCGGCTGCGATGGAATGTCGGCATGA
CCTACTCGGGCGACATGTGGTTCGACGCGGCCAACACCCTGCGCCAGCCGGCCTATGCCCTGCTCGACACCTCGCTGAGC
TGGGACATCAACAAGCATCTGACGGTGGTCGGCTATGTCGACAACCTGACCGACCGCGCCGTGCGCACCTATGCGTTTTC
GCTCGGCACGTTCGGCACTTTTGCCCAATACGGGCAGGGCCGCACGATCGGGCTGCGCCTTCAGGCCAGGCTGTGA

Upstream 100 bases:

>100_bases
GCGGGGCGCGACAGTTCCGGCATCGATCGCGGTAGTGGCCTCGGTCCCCCCCAACCAATAATGCGCAGGGTCAAAACAGA
CCAAAGAAGGGGATGTGGGT

Downstream 100 bases:

>100_bases
TGGTGCCGGCGCGGGCGGAGCACCGCGCGCGCTGCGCGAAAACCGGATCGACTCCAGCCACGCCGGACACGGGTGTCGCT
GGGCATTGCATTGCAGGAGG

Product: siderophore receptor protein

Products: NA

Alternate protein names: IPR65; IRPC [H]

Number of amino acids: Translated: 691; Mature: 690

Protein sequence:

>691_residues
MGVSTLRGLLLAGSTLGAVGAAGAQDSATAAEPADVAQLAPVVVTGTKLDASGQTADSATSVASGARLQAAGVARTDELG
KLFPELTVTPRSSRAYTLFGMRGTPSSDFYSPAVTVYVDGVPQDMAYFTQPLPDVEQVEVLRGPQGTLYGRAAQGGVINI
VTTKPNNRFGAQASVDVNNLTRRTDLSVRGPLVKDLLYGDVSAYFDDRPGTLKNPATGADQLDSGREALGRARLRWTPRD
TDLDATLSVSHDRYRSHEEYFQAYDLKDRHAIASSPFDLTEPSLTRTVTQAALSVDYYLRGWKLSSVSAYQDRRLERVLT
TGNADPENQKTFSQELRVATSGDVKRPVDGVFGLYYEKQAFERDRGIAVPGVSAFLFPGPSRSESNLRSMAAFGEGVWHA
TERLDLTAGLRYGIDSADIHYNRTGAAALSFAGDKTFRSLTPKVSVGYQAAPGWRVYGLYSEGYKAGGFNRIADNSAGSI
PYSAERLRNVEVGFQADLLGKRLRLDGALFHSRTSNLQAQVVSGLFQMLSNVGDARATGVELNGTWLATPDLTLRAGGAW
TTSKIYSYSAPQGNLDLTGKRVPYVVPLSLRASGEYRFRPQGMRGRLRWNVGMTYSGDMWFDAANTLRQPAYALLDTSLS
WDINKHLTVVGYVDNLTDRAVRTYAFSLGTFGTFAQYGQGRTIGLRLQARL

Sequences:

>Translated_691_residues
MGVSTLRGLLLAGSTLGAVGAAGAQDSATAAEPADVAQLAPVVVTGTKLDASGQTADSATSVASGARLQAAGVARTDELG
KLFPELTVTPRSSRAYTLFGMRGTPSSDFYSPAVTVYVDGVPQDMAYFTQPLPDVEQVEVLRGPQGTLYGRAAQGGVINI
VTTKPNNRFGAQASVDVNNLTRRTDLSVRGPLVKDLLYGDVSAYFDDRPGTLKNPATGADQLDSGREALGRARLRWTPRD
TDLDATLSVSHDRYRSHEEYFQAYDLKDRHAIASSPFDLTEPSLTRTVTQAALSVDYYLRGWKLSSVSAYQDRRLERVLT
TGNADPENQKTFSQELRVATSGDVKRPVDGVFGLYYEKQAFERDRGIAVPGVSAFLFPGPSRSESNLRSMAAFGEGVWHA
TERLDLTAGLRYGIDSADIHYNRTGAAALSFAGDKTFRSLTPKVSVGYQAAPGWRVYGLYSEGYKAGGFNRIADNSAGSI
PYSAERLRNVEVGFQADLLGKRLRLDGALFHSRTSNLQAQVVSGLFQMLSNVGDARATGVELNGTWLATPDLTLRAGGAW
TTSKIYSYSAPQGNLDLTGKRVPYVVPLSLRASGEYRFRPQGMRGRLRWNVGMTYSGDMWFDAANTLRQPAYALLDTSLS
WDINKHLTVVGYVDNLTDRAVRTYAFSLGTFGTFAQYGQGRTIGLRLQARL
>Mature_690_residues
GVSTLRGLLLAGSTLGAVGAAGAQDSATAAEPADVAQLAPVVVTGTKLDASGQTADSATSVASGARLQAAGVARTDELGK
LFPELTVTPRSSRAYTLFGMRGTPSSDFYSPAVTVYVDGVPQDMAYFTQPLPDVEQVEVLRGPQGTLYGRAAQGGVINIV
TTKPNNRFGAQASVDVNNLTRRTDLSVRGPLVKDLLYGDVSAYFDDRPGTLKNPATGADQLDSGREALGRARLRWTPRDT
DLDATLSVSHDRYRSHEEYFQAYDLKDRHAIASSPFDLTEPSLTRTVTQAALSVDYYLRGWKLSSVSAYQDRRLERVLTT
GNADPENQKTFSQELRVATSGDVKRPVDGVFGLYYEKQAFERDRGIAVPGVSAFLFPGPSRSESNLRSMAAFGEGVWHAT
ERLDLTAGLRYGIDSADIHYNRTGAAALSFAGDKTFRSLTPKVSVGYQAAPGWRVYGLYSEGYKAGGFNRIADNSAGSIP
YSAERLRNVEVGFQADLLGKRLRLDGALFHSRTSNLQAQVVSGLFQMLSNVGDARATGVELNGTWLATPDLTLRAGGAWT
TSKIYSYSAPQGNLDLTGKRVPYVVPLSLRASGEYRFRPQGMRGRLRWNVGMTYSGDMWFDAANTLRQPAYALLDTSLSW
DINKHLTVVGYVDNLTDRAVRTYAFSLGTFGTFAQYGQGRTIGLRLQARL

Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=374, Percent_Identity=26.2032085561497, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 74857; Mature: 74725

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVSTLRGLLLAGSTLGAVGAAGAQDSATAAEPADVAQLAPVVVTGTKLDASGQTADSAT
CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHCCEEEECCEECCCCCCCCCHH
SVASGARLQAAGVARTDELGKLFPELTVTPRSSRAYTLFGMRGTPSSDFYSPAVTVYVDG
HHHCCCEEEECCCCCHHHHHHHCCCEEECCCCCCEEEEEEECCCCCCCCCCCEEEEEECC
VPQDMAYFTQPLPDVEQVEVLRGPQGTLYGRAAQGGVINIVTTKPNNRFGAQASVDVNNL
CCHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEEHHHC
TRRTDLSVRGPLVKDLLYGDVSAYFDDRPGTLKNPATGADQLDSGREALGRARLRWTPRD
CCCCCCCCCCCHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHCCHHHHHCCCEEEECCCC
TDLDATLSVSHDRYRSHEEYFQAYDLKDRHAIASSPFDLTEPSLTRTVTQAALSVDYYLR
CCCCEEEEECHHHHHCHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHEEEEE
GWKLSSVSAYQDRRLERVLTTGNADPENQKTFSQELRVATSGDVKRPVDGVFGLYYEKQA
CEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHH
FERDRGIAVPGVSAFLFPGPSRSESNLRSMAAFGEGVWHATERLDLTAGLRYGIDSADIH
HHCCCCEECCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHEEEEHHHHCCCCCCCEE
YNRTGAAALSFAGDKTFRSLTPKVSVGYQAAPGWRVYGLYSEGYKAGGFNRIADNSAGSI
ECCCCCEEEEECCCHHHHHCCCCEECCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
PYSAERLRNVEVGFQADLLGKRLRLDGALFHSRTSNLQAQVVSGLFQMLSNVGDARATGV
CCCHHHHCCCCCCCCHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHCCE
ELNGTWLATPDLTLRAGGAWTTSKIYSYSAPQGNLDLTGKRVPYVVPLSLRASGEYRFRP
EECCEEEECCCEEEECCCCEECCEEEEECCCCCCCEECCCCCCEEEEEEEECCCCEEECC
QGMRGRLRWNVGMTYSGDMWFDAANTLRQPAYALLDTSLSWDINKHLTVVGYVDNLTDRA
CCCCCEEEEEECEEECCCEEECCHHHHHCCHHHHHCCCCCCCCCCCEEEEEECCCHHHHH
VRTYAFSLGTFGTFAQYGQGRTIGLRLQARL
HHHHHHHHCCHHHHHHHCCCCEEEEEEEECC
>Mature Secondary Structure 
GVSTLRGLLLAGSTLGAVGAAGAQDSATAAEPADVAQLAPVVVTGTKLDASGQTADSAT
CHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHCCEEEECCEECCCCCCCCCHH
SVASGARLQAAGVARTDELGKLFPELTVTPRSSRAYTLFGMRGTPSSDFYSPAVTVYVDG
HHHCCCEEEECCCCCHHHHHHHCCCEEECCCCCCEEEEEEECCCCCCCCCCCEEEEEECC
VPQDMAYFTQPLPDVEQVEVLRGPQGTLYGRAAQGGVINIVTTKPNNRFGAQASVDVNNL
CCHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEEHHHC
TRRTDLSVRGPLVKDLLYGDVSAYFDDRPGTLKNPATGADQLDSGREALGRARLRWTPRD
CCCCCCCCCCCHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHCCHHHHHCCCEEEECCCC
TDLDATLSVSHDRYRSHEEYFQAYDLKDRHAIASSPFDLTEPSLTRTVTQAALSVDYYLR
CCCCEEEEECHHHHHCHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHEEEEE
GWKLSSVSAYQDRRLERVLTTGNADPENQKTFSQELRVATSGDVKRPVDGVFGLYYEKQA
CEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHH
FERDRGIAVPGVSAFLFPGPSRSESNLRSMAAFGEGVWHATERLDLTAGLRYGIDSADIH
HHCCCCEECCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHEEEEHHHHCCCCCCCEE
YNRTGAAALSFAGDKTFRSLTPKVSVGYQAAPGWRVYGLYSEGYKAGGFNRIADNSAGSI
ECCCCCEEEEECCCHHHHHCCCCEECCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
PYSAERLRNVEVGFQADLLGKRLRLDGALFHSRTSNLQAQVVSGLFQMLSNVGDARATGV
CCCHHHHCCCCCCCCHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHCCE
ELNGTWLATPDLTLRAGGAWTTSKIYSYSAPQGNLDLTGKRVPYVVPLSLRASGEYRFRP
EECCEEEECCCEEEECCCCEECCEEEEECCCCCCCEECCCCCCEEEEEEEECCCCEEECC
QGMRGRLRWNVGMTYSGDMWFDAANTLRQPAYALLDTSLSWDINKHLTVVGYVDNLTDRA
CCCCCEEEEEECEEECCCEEECCHHHHHCCHHHHHCCCCCCCCCCCEEEEEECCCHHHHH
VRTYAFSLGTFGTFAQYGQGRTIGLRLQARL
HHHHHHHHCCHHHHHHHCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA