Click here to switch to the map view.

The map label for this gene is TIS1421b

Identifier: 17546390

GI number: 17546390

Start: 1792212

End: 1792598

Strand: Reverse

Name: TIS1421b

Synonym: RSc1671

Alternate gene names: NA

Gene position: 1792598-1792212 (Counterclockwise)

Preceding gene: 17546391

Following gene: 17546389

Centisome position: 48.23

GC content: 62.79

Gene sequence:

>387_bases
GTGCCGTTGGCGCTGATGGTCACCGGTGCCAATCGTCACGACTCGGTGGTGTTCGAGGTGCTCGTTGACGCCATCCCGAG
CGTGCCCGGACTCGATGGCCGCCCGCGATGCCGCCCCGACAAGCTTCACGCGGATAAGGGATACGACTTCGCGCGATGCC
GCCGGCATCTGCGCAAGCGGGGCATGACTCCCCGGATCGCTCGCCGTGGCATCGAGAAGAACGACCGGCTCGGCAAGCAT
CGCTGGGTGGTCGAACGCACCCATGCCTGGCTTGCTGGATTCGGCAAGTTGCGCATTCGTTTCGAGCGTTCTCTTCAGAC
TCACCTCGCTTTGCTCACCCTGGCTTGCGCCGTCATCTGCGGACGATTTGTTGATCGGTTTTGTTAG

Upstream 100 bases:

>100_bases
CAACGGTGGCCAGCCCCCGGGGGGCGAGCAGACGGGGCCGAATCCAACGGATCGCGGCAAGCTCGGTAGCAAGCGCCATC
TCGTCGTAGATCGGCGCGGC

Downstream 100 bases:

>100_bases
CGACTCTTAGTCAGCAATTGCGAGCCACGCCAGAAACAACCGAGATCGTGATGGGAATAACGCAGCTCACGATCGAGACG
ATCTGCGACTGCCTATGGGA

Product: TIS1421-transposase B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MPLALMVTGANRHDSVVFEVLVDAIPSVPGLDGRPRCRPDKLHADKGYDFARCRRHLRKRGMTPRIARRGIEKNDRLGKH
RWVVERTHAWLAGFGKLRIRFERSLQTHLALLTLACAVICGRFVDRFC

Sequences:

>Translated_128_residues
MPLALMVTGANRHDSVVFEVLVDAIPSVPGLDGRPRCRPDKLHADKGYDFARCRRHLRKRGMTPRIARRGIEKNDRLGKH
RWVVERTHAWLAGFGKLRIRFERSLQTHLALLTLACAVICGRFVDRFC
>Mature_127_residues
PLALMVTGANRHDSVVFEVLVDAIPSVPGLDGRPRCRPDKLHADKGYDFARCRRHLRKRGMTPRIARRGIEKNDRLGKHR
WVVERTHAWLAGFGKLRIRFERSLQTHLALLTLACAVICGRFVDRFC

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 14699; Mature: 14567

Theoretical pI: Translated: 11.54; Mature: 11.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALMVTGANRHDSVVFEVLVDAIPSVPGLDGRPRCRPDKLHADKGYDFARCRRHLRKR
CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
GMTPRIARRGIEKNDRLGKHRWVVERTHAWLAGFGKLRIRFERSLQTHLALLTLACAVIC
CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRFVDRFC
HHHHHHCC
>Mature Secondary Structure 
PLALMVTGANRHDSVVFEVLVDAIPSVPGLDGRPRCRPDKLHADKGYDFARCRRHLRKR
CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
GMTPRIARRGIEKNDRLGKHRWVVERTHAWLAGFGKLRIRFERSLQTHLALLTLACAVIC
CCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRFVDRFC
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1650732 [H]