| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is pstS1 [H]
Identifier: 17546248
GI number: 17546248
Start: 1633357
End: 1634388
Strand: Direct
Name: pstS1 [H]
Synonym: RSc1529
Alternate gene names: 17546248
Gene position: 1633357-1634388 (Clockwise)
Preceding gene: 17546247
Following gene: 17546249
Centisome position: 43.95
GC content: 63.86
Gene sequence:
>1032_bases ATGAAATTGGTCAAGACTGCGATTGCGGGCGTTGTTTCGCTGGCTTTCGCTGGTATCGCGTTTGCCGCCGACATCACCGG CGCTGGCGCGACGTTCCCGGCGCCTGTCTATAACAAGTGGGCTGACGCCTATCAGAAGGCCACCGGCACCAAGGTGAACT ATCAAGGCATCGGCTCGTCGGGCGGCATCAAGCAGATCACCGCCAAGACCGTCGATTTCGGCGCCTCGGACATGCCGCTC AAGGATGACGAGCTGAGCAAGGACGGCCTGCTGCAATTCCCGACCGTGATCGGCGGCGTGGTGCCGGTGATCAATCTGCC GGGCGTGAAGCCGGGCGAGCTGGTCCTGACGGGCCAGGTGCTGGGCGACATCTACCTGGGCAAGGTCAAGAAGTGGAATG ACCCGGCCATCGTCAAGCTGAATCCGAAGGCCAAGCTGCCGGACCAGGACATCCTGGTGGTGCGCCGTGCTGACGGTTCG GGCACCTCGTTCATCTTCACGAACTACCTGTCGAAGGTGAGCGCCGAGTGGAAGGGCAAGGTCGGCGAAGGCACGACCGT GAACTGGCCGACCGGCACGGGCGGCAAGGGCAACGAAGGCGTGGCCGCCTTCGTGCAGCGTCTGGGTGGCGCGATCGGCT ACGTCGAGTACGCCTACGCCAAGCAGAACCACATGACCCACATCAATCTGCAGAACGCCTCGGGCGCCGTGGTGCAGCCG ACCAGCGACGCCTTCAAGGCCGCCGCTGCCGGCGCCGACTGGAGCAAGTCGTTCTACCAGATCCTGACCAACCAGCCGGG CAAGGACGCATGGCCGATCGCCGGCGCGACCTTCATCCTGGTGCACAAGACCCAGGACAAGCCGGTCCAGGGCACCGAGG TCCTGAAGTTCTTCGACTGGGCCTACAAGAACGGCGGCAAGGATGCTTCCGCGCTGGACTACGTGCCGCTGCCGGACCCG GTGCTGAACCAGATTCGCGCCACCTGGAAGTCGGGCGTGAAGGACGCTTCGGGCAAGCCGATCTACAACTGA
Upstream 100 bases:
>100_bases TTGTGAGAAGTTTTCGTGTTGTCACAGAACTGTCATGCGGCCGACCTACAGTTCGGGTGTCAAAAATTTGTCATCGCTCA ACCGCTCCTCTGGAGGACAC
Downstream 100 bases:
>100_bases TCGCTGCTGTGTAGCGGGTGCGGGCGGTGTTTGTCGCCCGCACCTCTTGAAAGCTCTTTAGACGGCTGACCGGTTTCCAT CATGGCTACGCTCTCCGACT
Product: phosphate ABC transporter phosphate-binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MKLVKTAIAGVVSLAFAGIAFAADITGAGATFPAPVYNKWADAYQKATGTKVNYQGIGSSGGIKQITAKTVDFGASDMPL KDDELSKDGLLQFPTVIGGVVPVINLPGVKPGELVLTGQVLGDIYLGKVKKWNDPAIVKLNPKAKLPDQDILVVRRADGS GTSFIFTNYLSKVSAEWKGKVGEGTTVNWPTGTGGKGNEGVAAFVQRLGGAIGYVEYAYAKQNHMTHINLQNASGAVVQP TSDAFKAAAAGADWSKSFYQILTNQPGKDAWPIAGATFILVHKTQDKPVQGTEVLKFFDWAYKNGGKDASALDYVPLPDP VLNQIRATWKSGVKDASGKPIYN
Sequences:
>Translated_343_residues MKLVKTAIAGVVSLAFAGIAFAADITGAGATFPAPVYNKWADAYQKATGTKVNYQGIGSSGGIKQITAKTVDFGASDMPL KDDELSKDGLLQFPTVIGGVVPVINLPGVKPGELVLTGQVLGDIYLGKVKKWNDPAIVKLNPKAKLPDQDILVVRRADGS GTSFIFTNYLSKVSAEWKGKVGEGTTVNWPTGTGGKGNEGVAAFVQRLGGAIGYVEYAYAKQNHMTHINLQNASGAVVQP TSDAFKAAAAGADWSKSFYQILTNQPGKDAWPIAGATFILVHKTQDKPVQGTEVLKFFDWAYKNGGKDASALDYVPLPDP VLNQIRATWKSGVKDASGKPIYN >Mature_343_residues MKLVKTAIAGVVSLAFAGIAFAADITGAGATFPAPVYNKWADAYQKATGTKVNYQGIGSSGGIKQITAKTVDFGASDMPL KDDELSKDGLLQFPTVIGGVVPVINLPGVKPGELVLTGQVLGDIYLGKVKKWNDPAIVKLNPKAKLPDQDILVVRRADGS GTSFIFTNYLSKVSAEWKGKVGEGTTVNWPTGTGGKGNEGVAAFVQRLGGAIGYVEYAYAKQNHMTHINLQNASGAVVQP TSDAFKAAAAGADWSKSFYQILTNQPGKDAWPIAGATFILVHKTQDKPVQGTEVLKFFDWAYKNGGKDASALDYVPLPDP VLNQIRATWKSGVKDASGKPIYN
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=331, Percent_Identity=67.6737160120846, Blast_Score=466, Evalue=1e-132,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 36279; Mature: 36279
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLVKTAIAGVVSLAFAGIAFAADITGAGATFPAPVYNKWADAYQKATGTKVNYQGIGSS CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC GGIKQITAKTVDFGASDMPLKDDELSKDGLLQFPTVIGGVVPVINLPGVKPGELVLTGQV CCCCEEEEHHCCCCCCCCCCCCCCCCCCCCEECHHHHHCHHHEEECCCCCCCCEEEEHHH LGDIYLGKVKKWNDPAIVKLNPKAKLPDQDILVVRRADGSGTSFIFTNYLSKVSAEWKGK HHHHHHCCCEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC VGEGTTVNWPTGTGGKGNEGVAAFVQRLGGAIGYVEYAYAKQNHMTHINLQNASGAVVQP CCCCCEEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCEECC TSDAFKAAAAGADWSKSFYQILTNQPGKDAWPIAGATFILVHKTQDKPVQGTEVLKFFDW CHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHH AYKNGGKDASALDYVPLPDPVLNQIRATWKSGVKDASGKPIYN HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKLVKTAIAGVVSLAFAGIAFAADITGAGATFPAPVYNKWADAYQKATGTKVNYQGIGSS CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC GGIKQITAKTVDFGASDMPLKDDELSKDGLLQFPTVIGGVVPVINLPGVKPGELVLTGQV CCCCEEEEHHCCCCCCCCCCCCCCCCCCCCEECHHHHHCHHHEEECCCCCCCCEEEEHHH LGDIYLGKVKKWNDPAIVKLNPKAKLPDQDILVVRRADGSGTSFIFTNYLSKVSAEWKGK HHHHHHCCCEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCC VGEGTTVNWPTGTGGKGNEGVAAFVQRLGGAIGYVEYAYAKQNHMTHINLQNASGAVVQP CCCCCEEECCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCEECC TSDAFKAAAAGADWSKSFYQILTNQPGKDAWPIAGATFILVHKTQDKPVQGTEVLKFFDW CHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHH AYKNGGKDASALDYVPLPDPVLNQIRATWKSGVKDASGKPIYN HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6321434; 6365894; 7686882; 9278503; 9298646; 2215649; 9228942; 9671506 [H]