| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is cutL [H]
Identifier: 17546187
GI number: 17546187
Start: 1570710
End: 1573094
Strand: Reverse
Name: cutL [H]
Synonym: RSc1468
Alternate gene names: 17546187
Gene position: 1573094-1570710 (Counterclockwise)
Preceding gene: 17546188
Following gene: 17546186
Centisome position: 42.33
GC content: 69.31
Gene sequence:
>2385_bases ATGAACGCTCCCGCAGAACCCAACCGCCACCTGATCGGCGCGGCCGTCAAGCGCAAGGAGGACTACCGCTTCCTGACGGG CGCGGGCCAGTACACCGACGACGTGGTGCAGGCACACCAGTCCTACGCCGTGTTCCTGCGCTCGCCGTATGCGCACGCGC GCATTGTCCGCATCGATGCCGAAGCCGCCCGCAAGCAGCGCGGCGTGCTCGCCGTGCTCACGGGCGAGGACCTTGCCACC GACAAGGTCAACGGCTTGCCGTGCGGCTGGCTGATCCACAGCCTCGACGGCTCGCCGATGAAGGAGCCGCCCCACCCCGT GCTCGCGCAGGGCAAGGTGCGCCACGTGGGCGACCAGGTCGCGCTGGTGGTGGCCGAGTCGGTGAAGATCGCCAAGGATG CCGTCGAGCTGATCGACGTGGAATATGAAGAGCTGCCCGCCGTGGTCGACCCTGCCGCGGCAAGCACCGCCGGCACCGCG GTCCACGACGGCGTGCCCGACAACACCTGCTACACCTGGGGCCACGGCGACAAGGCTGCCACCGACGCCGCCTTCGCCCG CGCCGCGCATGTCACCCGGCTCGACATCGTCAACAACCGGCTGATCCCGAACGCCATCGAGCCGCGTGCCGTGAACGCGA GCTACTCGCGGCAGGACGACAGCTACACGCTCTATGTCGCCAACCAGAACCCGCACGTCGAGCGGCTGCTGATGTCGGCG TTCGTGCTGGGGCTGTCCGAGGCCAAGGTGCGCGTGATCGCGCCCGACGTGGGCGGCGGCTTCGGCTCGAAGATCTTCCT GTACCCGGAAGACGTGGCGCTGACCTGGGCATCGAAGAAGGTCGGCCGGCCGATCAAGTGGACGGCCGAGCGTTCCGAGT CCTTCCTGACCGACGCGCATGGCCGCGATCACGTCACGCACGCAGAACTGGCGCTCGACGCGCAAGGCAACTTCCTCGGC ATGCGCGTGCACACCATCGCCAACATGGGTGCGTACCTGTCGACGTTCGCCAGCAGCGTGCCGACCATCCTGTATGCCAC GCTGCTCGCCGGGCAGTACCGGACGCCCGCCATCTACGCGGAAGTCAAGGCGGTGTTCACCAACACCGCGCCGGTCGATG CCTATCGGGGTGCCGGGCGGCCGGAAGCCACCTATGTGGTCGAGCGGCTGGTCGAGACCGCGGCGCGCGAGCTGCAGATC GACCCGGCCGAACTGCGCCGCCGCAACTTCATCCGCAGCTTCCCGTATGCCACGCCGGTCGGCCTGACGTATGACACGGG CGACTACGAACCCTGCCTGGACCGCGCCATCGAACTGGCCGACGTGCCGGGCTTGCGCGCCCGCCGCGACGCCTCGCGCG CCAAGGGCCGGCTGCGCGGCATGGGCTACTCCTGCTACATCGAGGCGTGCGGGCTGGCGCCGTCCAACATCGCCGGGGCG CTGGGCGCGCGCGCGGGCCTGTTCGAGGTGGGCGAGATCCGCGTGCACCCGACCGGCTCCGTCACCGTGTTCACCGGCTC GCACAGCCACGGACAAGGGCACGAGACGACCTTCGCGCAGGTGGTGGCCGATCGCCTGGGCGTGCCGATCGAGAACGTCG AGATCGTGCACGGCGATACCGGGCGCATCCCCTTCGGCATGGGCACGTACGGCTCGCGCTCGATCGCGGTGGGCGGCTCG GCCGTCATGAAGGCGCTCGACAAGATCGAGGCCAAGGCCAAGAAGATCGCCGCGCACCTGCTGGAAGCCTCCGCCGAGGA CATCGAGTTCAAGGACGGCGTCTTCCGCGTGGCCGGCACCGACCGCACCAAGACCTTCGGCGAGGTCGCGCTCACGGCCT ATGTGCCGCACAACTACCCCCTCGACAAGCTCGAGCCGGGCCTGAACGAAAACGCCTTCTACGACCCGGCCAACTTCACC TACCCGGCCGGCGCCTACATTTGCGAGGTGGAGGTCGACCCCGAGACCGGCGAGGTGCGCATCGACCGCTTCGTGGCGGT GGACGACTTCGGCAACATCATCAACCCGATGATCGTCGAGGGCCAGGTGCACGGCGGACTCGGCCAGGGCATCGGCCAGG CGCTGCTGGAGGGCTGCGTGTACGACGACAGCGGCCAGCTGCTGACCGGCTCCTACATGGACTACGCCATGCCGCGCGCC GACGACCTGCCGAGCTTCACCGTGGAGACCGCCAAGGGCACGCCCTGCACGCACAACCCGCTGGGCGTGAAGGGCTGCGG CGAGGCCGGCGCGATCGGCTCGCCGCCGGCGCTGATCAACGCCATCGTCGATGCCCTGGCGCCGCTGGGCGTGAAGGACA TCCAGATGCCGGCCACGCCCCACCGCGTCTGGCGGGCCATCCAATCCGCGCGGGCGAATGCCTGA
Upstream 100 bases:
>100_bases GCAAGGCGCCGAGGCCATGGCGGCTGCCGAAGGCGAAGACGCCTCGCTGCAGAGCCTGGCCGCCGCGCGCGCCCATGCCG CCTGACGCGAGGAGACCGCC
Downstream 100 bases:
>100_bases CCTGACCAGGAGCGCGCCATGTATGCCTTCGAGTACCACAAAGCCACCGACGCCCAGACCGCCGTCACCGCGCTGAAGAT GCATCCGGACGGCAAGTACC
Product: oxidoreductase
Products: NA
Alternate protein names: CO dehydrogenase subunit L; CO-DH L [H]
Number of amino acids: Translated: 794; Mature: 794
Protein sequence:
>794_residues MNAPAEPNRHLIGAAVKRKEDYRFLTGAGQYTDDVVQAHQSYAVFLRSPYAHARIVRIDAEAARKQRGVLAVLTGEDLAT DKVNGLPCGWLIHSLDGSPMKEPPHPVLAQGKVRHVGDQVALVVAESVKIAKDAVELIDVEYEELPAVVDPAAASTAGTA VHDGVPDNTCYTWGHGDKAATDAAFARAAHVTRLDIVNNRLIPNAIEPRAVNASYSRQDDSYTLYVANQNPHVERLLMSA FVLGLSEAKVRVIAPDVGGGFGSKIFLYPEDVALTWASKKVGRPIKWTAERSESFLTDAHGRDHVTHAELALDAQGNFLG MRVHTIANMGAYLSTFASSVPTILYATLLAGQYRTPAIYAEVKAVFTNTAPVDAYRGAGRPEATYVVERLVETAARELQI DPAELRRRNFIRSFPYATPVGLTYDTGDYEPCLDRAIELADVPGLRARRDASRAKGRLRGMGYSCYIEACGLAPSNIAGA LGARAGLFEVGEIRVHPTGSVTVFTGSHSHGQGHETTFAQVVADRLGVPIENVEIVHGDTGRIPFGMGTYGSRSIAVGGS AVMKALDKIEAKAKKIAAHLLEASAEDIEFKDGVFRVAGTDRTKTFGEVALTAYVPHNYPLDKLEPGLNENAFYDPANFT YPAGAYICEVEVDPETGEVRIDRFVAVDDFGNIINPMIVEGQVHGGLGQGIGQALLEGCVYDDSGQLLTGSYMDYAMPRA DDLPSFTVETAKGTPCTHNPLGVKGCGEAGAIGSPPALINAIVDALAPLGVKDIQMPATPHRVWRAIQSARANA
Sequences:
>Translated_794_residues MNAPAEPNRHLIGAAVKRKEDYRFLTGAGQYTDDVVQAHQSYAVFLRSPYAHARIVRIDAEAARKQRGVLAVLTGEDLAT DKVNGLPCGWLIHSLDGSPMKEPPHPVLAQGKVRHVGDQVALVVAESVKIAKDAVELIDVEYEELPAVVDPAAASTAGTA VHDGVPDNTCYTWGHGDKAATDAAFARAAHVTRLDIVNNRLIPNAIEPRAVNASYSRQDDSYTLYVANQNPHVERLLMSA FVLGLSEAKVRVIAPDVGGGFGSKIFLYPEDVALTWASKKVGRPIKWTAERSESFLTDAHGRDHVTHAELALDAQGNFLG MRVHTIANMGAYLSTFASSVPTILYATLLAGQYRTPAIYAEVKAVFTNTAPVDAYRGAGRPEATYVVERLVETAARELQI DPAELRRRNFIRSFPYATPVGLTYDTGDYEPCLDRAIELADVPGLRARRDASRAKGRLRGMGYSCYIEACGLAPSNIAGA LGARAGLFEVGEIRVHPTGSVTVFTGSHSHGQGHETTFAQVVADRLGVPIENVEIVHGDTGRIPFGMGTYGSRSIAVGGS AVMKALDKIEAKAKKIAAHLLEASAEDIEFKDGVFRVAGTDRTKTFGEVALTAYVPHNYPLDKLEPGLNENAFYDPANFT YPAGAYICEVEVDPETGEVRIDRFVAVDDFGNIINPMIVEGQVHGGLGQGIGQALLEGCVYDDSGQLLTGSYMDYAMPRA DDLPSFTVETAKGTPCTHNPLGVKGCGEAGAIGSPPALINAIVDALAPLGVKDIQMPATPHRVWRAIQSARANA >Mature_794_residues MNAPAEPNRHLIGAAVKRKEDYRFLTGAGQYTDDVVQAHQSYAVFLRSPYAHARIVRIDAEAARKQRGVLAVLTGEDLAT DKVNGLPCGWLIHSLDGSPMKEPPHPVLAQGKVRHVGDQVALVVAESVKIAKDAVELIDVEYEELPAVVDPAAASTAGTA VHDGVPDNTCYTWGHGDKAATDAAFARAAHVTRLDIVNNRLIPNAIEPRAVNASYSRQDDSYTLYVANQNPHVERLLMSA FVLGLSEAKVRVIAPDVGGGFGSKIFLYPEDVALTWASKKVGRPIKWTAERSESFLTDAHGRDHVTHAELALDAQGNFLG MRVHTIANMGAYLSTFASSVPTILYATLLAGQYRTPAIYAEVKAVFTNTAPVDAYRGAGRPEATYVVERLVETAARELQI DPAELRRRNFIRSFPYATPVGLTYDTGDYEPCLDRAIELADVPGLRARRDASRAKGRLRGMGYSCYIEACGLAPSNIAGA LGARAGLFEVGEIRVHPTGSVTVFTGSHSHGQGHETTFAQVVADRLGVPIENVEIVHGDTGRIPFGMGTYGSRSIAVGGS AVMKALDKIEAKAKKIAAHLLEASAEDIEFKDGVFRVAGTDRTKTFGEVALTAYVPHNYPLDKLEPGLNENAFYDPANFT YPAGAYICEVEVDPETGEVRIDRFVAVDDFGNIINPMIVEGQVHGGLGQGIGQALLEGCVYDDSGQLLTGSYMDYAMPRA DDLPSFTVETAKGTPCTHNPLGVKGCGEAGAIGSPPALINAIVDALAPLGVKDIQMPATPHRVWRAIQSARANA
Specific function: Catalyzes the oxidation of carbon monoxide to carbon dioxide [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI71773480, Length=801, Percent_Identity=23.8451935081149, Blast_Score=137, Evalue=4e-32, Organism=Homo sapiens, GI91823271, Length=789, Percent_Identity=23.3206590621039, Blast_Score=135, Evalue=1e-31, Organism=Escherichia coli, GI1789230, Length=780, Percent_Identity=29.4871794871795, Blast_Score=261, Evalue=1e-70, Organism=Escherichia coli, GI1789246, Length=828, Percent_Identity=27.2946859903382, Blast_Score=220, Evalue=3e-58, Organism=Escherichia coli, GI1786478, Length=735, Percent_Identity=26.8027210884354, Blast_Score=132, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17540638, Length=830, Percent_Identity=25.1807228915663, Blast_Score=166, Evalue=4e-41, Organism=Caenorhabditis elegans, GI17539860, Length=817, Percent_Identity=23.6230110159119, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI17737937, Length=797, Percent_Identity=25.7214554579674, Blast_Score=150, Evalue=4e-36, Organism=Drosophila melanogaster, GI24647193, Length=812, Percent_Identity=23.0295566502463, Blast_Score=102, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012780 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 85128; Mature: 85128
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPAEPNRHLIGAAVKRKEDYRFLTGAGQYTDDVVQAHQSYAVFLRSPYAHARIVRIDA CCCCCCCCCEEEHHHHHCCCCCEEEECCCCCHHHHHHHHHHEEEEEECCCCCEEEEEEEH EAARKQRGVLAVLTGEDLATDKVNGLPCGWLIHSLDGSPMKEPPHPVLAQGKVRHVGDQV HHHHHHCCEEEEEECCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCHHHCCCEE ALVVAESVKIAKDAVELIDVEYEELPAVVDPAAASTAGTAVHDGVPDNTCYTWGHGDKAA EEEEHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCHH TDAAFARAAHVTRLDIVNNRLIPNAIEPRAVNASYSRQDDSYTLYVANQNPHVERLLMSA HHHHHHHHHHHEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH FVLGLSEAKVRVIAPDVGGGFGSKIFLYPEDVALTWASKKVGRPIKWTAERSESFLTDAH HHHCCCCCEEEEEECCCCCCCCCEEEEEECCEEEEECHHHCCCCEEEEHHHHHHHHHCCC GRDHVTHAELALDAQGNFLGMRVHTIANMGAYLSTFASSVPTILYATLLAGQYRTPAIYA CCCCCEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHE EVKAVFTNTAPVDAYRGAGRPEATYVVERLVETAARELQIDPAELRRRNFIRSFPYATPV EEEHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC GLTYDTGDYEPCLDRAIELADVPGLRARRDASRAKGRLRGMGYSCYIEACGLAPSNIAGA CEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH LGARAGLFEVGEIRVHPTGSVTVFTGSHSHGQGHETTFAQVVADRLGVPIENVEIVHGDT HHCCCCCEEECEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC GRIPFGMGTYGSRSIAVGGSAVMKALDKIEAKAKKIAAHLLEASAEDIEFKDGVFRVAGT CCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC DRTKTFGEVALTAYVPHNYPLDKLEPGLNENAFYDPANFTYPAGAYICEVEVDPETGEVR CCCCCCCEEEEEEEECCCCCHHHCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCEE IDRFVAVDDFGNIINPMIVEGQVHGGLGQGIGQALLEGCVYDDSGQLLTGSYMDYAMPRA EEEEEEECHHCHHCCCEEEEEEECCCHHHHHHHHHHHCCEECCCCCEEECCHHHHCCCCC DDLPSFTVETAKGTPCTHNPLGVKGCGEAGAIGSPPALINAIVDALAPLGVKDIQMPATP CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCH HRVWRAIQSARANA HHHHHHHHHHCCCC >Mature Secondary Structure MNAPAEPNRHLIGAAVKRKEDYRFLTGAGQYTDDVVQAHQSYAVFLRSPYAHARIVRIDA CCCCCCCCCEEEHHHHHCCCCCEEEECCCCCHHHHHHHHHHEEEEEECCCCCEEEEEEEH EAARKQRGVLAVLTGEDLATDKVNGLPCGWLIHSLDGSPMKEPPHPVLAQGKVRHVGDQV HHHHHHCCEEEEEECCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCHHHCCCEE ALVVAESVKIAKDAVELIDVEYEELPAVVDPAAASTAGTAVHDGVPDNTCYTWGHGDKAA EEEEHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCHH TDAAFARAAHVTRLDIVNNRLIPNAIEPRAVNASYSRQDDSYTLYVANQNPHVERLLMSA HHHHHHHHHHHEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH FVLGLSEAKVRVIAPDVGGGFGSKIFLYPEDVALTWASKKVGRPIKWTAERSESFLTDAH HHHCCCCCEEEEEECCCCCCCCCEEEEEECCEEEEECHHHCCCCEEEEHHHHHHHHHCCC GRDHVTHAELALDAQGNFLGMRVHTIANMGAYLSTFASSVPTILYATLLAGQYRTPAIYA CCCCCEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHE EVKAVFTNTAPVDAYRGAGRPEATYVVERLVETAARELQIDPAELRRRNFIRSFPYATPV EEEHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC GLTYDTGDYEPCLDRAIELADVPGLRARRDASRAKGRLRGMGYSCYIEACGLAPSNIAGA CEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH LGARAGLFEVGEIRVHPTGSVTVFTGSHSHGQGHETTFAQVVADRLGVPIENVEIVHGDT HHCCCCCEEECEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC GRIPFGMGTYGSRSIAVGGSAVMKALDKIEAKAKKIAAHLLEASAEDIEFKDGVFRVAGT CCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC DRTKTFGEVALTAYVPHNYPLDKLEPGLNENAFYDPANFTYPAGAYICEVEVDPETGEVR CCCCCCCEEEEEEEECCCCCHHHCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCEE IDRFVAVDDFGNIINPMIVEGQVHGGLGQGIGQALLEGCVYDDSGQLLTGSYMDYAMPRA EEEEEEECHHCHHCCCEEEEEEECCCHHHHHHHHHHHCCEECCCCCEEECCHHHHCCCCC DDLPSFTVETAKGTPCTHNPLGVKGCGEAGAIGSPPALINAIVDALAPLGVKDIQMPATP CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCH HRVWRAIQSARANA HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10482497; 2818128; 10966817; 11076018 [H]