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The map label for this gene is pcaH [H]

Identifier: 17546160

GI number: 17546160

Start: 1544149

End: 1544889

Strand: Direct

Name: pcaH [H]

Synonym: RSc1441

Alternate gene names: 17546160

Gene position: 1544149-1544889 (Clockwise)

Preceding gene: 17546158

Following gene: 17546161

Centisome position: 41.55

GC content: 65.18

Gene sequence:

>741_bases
ATGACGATCCCGTATTCGGGCACCGGCGAATTCGCCCAGCGCGACACCGCGCTGCATCCGCCTGCGCTGACCCCCGGCTA
CAAGACCAGCGTGCTGCGCTCGCCGCGCAACGCGCTGATCTCGACACTCAATACGCTGTCGGAGACCACCGCGCCGGTCT
TCCACGCTGACGACCTCGGCTCGCTCGACAATGACCTGATCCTCAACTATGCCAAGGACGGCTTGCCTATCGGTGAGCGC
ATCATCGTGCACGGCTATGTGCGAGACGAATTCGGCCGCCCGGTGCCCAACGCGCTGGTCGAGGTGTGGCAGGCCAACGC
CGGCGGCCGGTATCGCCACAAGAAGGACCAGTACATCGCGCCGATCGACCCCAACTTCGGCGGCTGCGGCCGTATGCTGA
CGGACGCCAACGGCTACTACGCCTATCGCACCATCAAACCGGGCCCGTATCCGTGGCGCAATCGCATCAACGATTGGAGG
CCTTCGCACATCCATTACTCGCTGTGCGGCGATGGCTGGGCGCAGCGCCTGATCACGCAGATGTATTTCGAGGGCGATCC
GCTGATCGCGCAGTGCCCGATCATCCGGACCATCCCCAATGAGGCGCAGGTGCGCGGCCTCATTGCGCTGCTCGACACGG
CCAACCATGTGCCGCTGGATGCCCGCTGCTACCGCTTCGACATCACGCTGCGCGGCCGCCGCGCCACGCATTTCGAGAAC
GCCTTGGCCGGAGCCCGATGA

Upstream 100 bases:

>100_bases
ATAACGTCTGGTTATCGATTTTTCGATCAGAAGTCAATTTACTTCACTTTTTTGCCGCTATACAGTGGCTTCAGATCGAT
TCGATTTCAGGAGACGCCCC

Downstream 100 bases:

>100_bases
TGACGATGACCACGCTGCGGGAATCCCTGGAACGCACCCAGGCGATGGCCCCGACCACGACCCCGCCGTTCGTGCACTAC
GACGAGACCGCCTCGCAGAC

Product: protocatechuate 3,4-dioxygenase subunit beta oxidoreductase

Products: NA

Alternate protein names: 3,4-PCD [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTIPYSGTGEFAQRDTALHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLGSLDNDLILNYAKDGLPIGER
IIVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIAPIDPNFGGCGRMLTDANGYYAYRTIKPGPYPWRNRINDWR
PSHIHYSLCGDGWAQRLITQMYFEGDPLIAQCPIIRTIPNEAQVRGLIALLDTANHVPLDARCYRFDITLRGRRATHFEN
ALAGAR

Sequences:

>Translated_246_residues
MTIPYSGTGEFAQRDTALHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLGSLDNDLILNYAKDGLPIGER
IIVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIAPIDPNFGGCGRMLTDANGYYAYRTIKPGPYPWRNRINDWR
PSHIHYSLCGDGWAQRLITQMYFEGDPLIAQCPIIRTIPNEAQVRGLIALLDTANHVPLDARCYRFDITLRGRRATHFEN
ALAGAR
>Mature_245_residues
TIPYSGTGEFAQRDTALHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLGSLDNDLILNYAKDGLPIGERI
IVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIAPIDPNFGGCGRMLTDANGYYAYRTIKPGPYPWRNRINDWRP
SHIHYSLCGDGWAQRLITQMYFEGDPLIAQCPIIRTIPNEAQVRGLIALLDTANHVPLDARCYRFDITLRGRRATHFENA
LAGAR

Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889
- InterPro:   IPR012785 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: =1.13.11.3 [H]

Molecular weight: Translated: 27561; Mature: 27429

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS00083 INTRADIOL_DIOXYGENAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPYSGTGEFAQRDTALHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLG
CCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCC
SLDNDLILNYAKDGLPIGERIIVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIA
CCCCCEEEEECCCCCCCCCEEEEEEEEHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEC
PIDPNFGGCGRMLTDANGYYAYRTIKPGPYPWRNRINDWRPSHIHYSLCGDGWAQRLITQ
CCCCCCCCCCCEEECCCCEEEEEECCCCCCCHHHCCCCCCCCEEEEEECCCHHHHHHHHH
MYFEGDPLIAQCPIIRTIPNEAQVRGLIALLDTANHVPLDARCYRFDITLRGRRATHFEN
HHHCCCCCEEECCEEEECCCHHHHHHHHHEECCCCCCCCCCEEEEEEEEECCCCCHHHHH
ALAGAR
HHCCCC
>Mature Secondary Structure 
TIPYSGTGEFAQRDTALHPPALTPGYKTSVLRSPRNALISTLNTLSETTAPVFHADDLG
CCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCC
SLDNDLILNYAKDGLPIGERIIVHGYVRDEFGRPVPNALVEVWQANAGGRYRHKKDQYIA
CCCCCEEEEECCCCCCCCCEEEEEEEEHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEC
PIDPNFGGCGRMLTDANGYYAYRTIKPGPYPWRNRINDWRPSHIHYSLCGDGWAQRLITQ
CCCCCCCCCCCEEECCCCEEEEEECCCCCCCHHHCCCCCCCCEEEEEECCCHHHHHHHHH
MYFEGDPLIAQCPIIRTIPNEAQVRGLIALLDTANHVPLDARCYRFDITLRGRRATHFEN
HHHCCCCCEEECCEEEECCCHHHHHHHHHEECCCCCCCCCCEEEEEEEEECCCCCHHHHH
ALAGAR
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704; 8063101 [H]