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The map label for this gene is pcaQ [H]

Identifier: 17546159

GI number: 17546159

Start: 1543091

End: 1544050

Strand: Reverse

Name: pcaQ [H]

Synonym: RSc1440

Alternate gene names: 17546159

Gene position: 1544050-1543091 (Counterclockwise)

Preceding gene: 17546163

Following gene: 17546156

Centisome position: 41.55

GC content: 69.69

Gene sequence:

>960_bases
ATGGAAAATCCCGCCGCTTCCGGTGAGGCGCTGCAATCACGCATCCGCTTCCGCCATCTCAGCTGCTTCGTCGCCATCGC
CCAGGAGCGCAACCTGCGCCGTGCCGCCGAACGGCTGCACCTGAGCCAGCCGGCCGTCTCCAAGACCCTGTGCGAACTGG
AAGCACTGTCGGGCGCGCAGTTAGTCGAGCGTGGACGCCATGGCGCGCGCCTGACCGCCGCCGGCGAGCACTTCCTGCGC
TATGCGGTGGGCGCCACGCAGGCGCTGGATGCCGCCGCCGCCGCCCTGGGCAGCACCGGCGAACCGACACCACCAGTACT
CGAAATCGGTGCCCTGCCCACCGTGGCGAGCGGCCTGTTGCCCGAGGCCATCGCCCAGCTGCATGCGCTGCGCCCGCACG
CCGGCGTGCGCCTGCGCACCGGCACCAATGCCGACCTGCTGGCGGCGCTCAAGGCCGGCGAACTGGATCTGGTGGTCGGT
CGCATGGCCGAGCCGGCCATGATGCAGGGGCTATCCTTCGAATTGCTGTATGCCGAGCCGCTGGCGCTGGTGGTGCGCCC
CGACCATCCCCTGATGGCCGAACCCGGCGCCTCGGCATCGCTGCCGGCGGTCCTGGACTACCCGCTGGTGATCTCCCCAC
CCGGCACCGTGCCACGCCACCACACCGAAGCGCTATTCCAGACGCACGGGCTGCGCCTGCCACCCGGCGTAACGGAGACC
CTCTCCGTATCGGTTGCACGGCTATTAGCCTGCCGCTCCGACGCCGTCTGGATCACGCCCGAGCGCGCCGCTCGCGACGA
CATGGAGCATGGCTGGCTGGTACGGCTGGACTTGCCGACCTCCGCCACCAAGGAGCCGGTCGGCCTGCTACGGCGCAGCG
CCGATACGCCCGGCGAACTGGCTACGGCGTTCATGACCGTGCTGGCAAGCCAAGTACAAACCAACGCGACACTCCGCTAG

Upstream 100 bases:

>100_bases
ATGGGGCGTCTCCTGAAATCGAATCGATCTGAAGCCACTGTATAGCGGCAAAAAAGTGAAGTAAATTGACTTCTGATCGA
AAAATCGATAACCAGACGTT

Downstream 100 bases:

>100_bases
CCGGTAGGGGTAGGCTACGCCTCTTGCATACACAGCGGCCGACGAGCTGTTGCACGGTCAAGGCAAAAACAAGCGGCAGC
CCCCCTCGCAAGGGTACAAC

Product: transcriptional regulatory DNA-binding transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MENPAASGEALQSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLCELEALSGAQLVERGRHGARLTAAGEHFLR
YAVGATQALDAAAAALGSTGEPTPPVLEIGALPTVASGLLPEAIAQLHALRPHAGVRLRTGTNADLLAALKAGELDLVVG
RMAEPAMMQGLSFELLYAEPLALVVRPDHPLMAEPGASASLPAVLDYPLVISPPGTVPRHHTEALFQTHGLRLPPGVTET
LSVSVARLLACRSDAVWITPERAARDDMEHGWLVRLDLPTSATKEPVGLLRRSADTPGELATAFMTVLASQVQTNATLR

Sequences:

>Translated_319_residues
MENPAASGEALQSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLCELEALSGAQLVERGRHGARLTAAGEHFLR
YAVGATQALDAAAAALGSTGEPTPPVLEIGALPTVASGLLPEAIAQLHALRPHAGVRLRTGTNADLLAALKAGELDLVVG
RMAEPAMMQGLSFELLYAEPLALVVRPDHPLMAEPGASASLPAVLDYPLVISPPGTVPRHHTEALFQTHGLRLPPGVTET
LSVSVARLLACRSDAVWITPERAARDDMEHGWLVRLDLPTSATKEPVGLLRRSADTPGELATAFMTVLASQVQTNATLR
>Mature_319_residues
MENPAASGEALQSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLCELEALSGAQLVERGRHGARLTAAGEHFLR
YAVGATQALDAAAAALGSTGEPTPPVLEIGALPTVASGLLPEAIAQLHALRPHAGVRLRTGTNADLLAALKAGELDLVVG
RMAEPAMMQGLSFELLYAEPLALVVRPDHPLMAEPGASASLPAVLDYPLVISPPGTVPRHHTEALFQTHGLRLPPGVTET
LSVSVARLLACRSDAVWITPERAARDDMEHGWLVRLDLPTSATKEPVGLLRRSADTPGELATAFMTVLASQVQTNATLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=282, Percent_Identity=47.8723404255319, Blast_Score=264, Evalue=5e-72,
Organism=Escherichia coli, GI1787601, Length=296, Percent_Identity=28.0405405405405, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788887, Length=187, Percent_Identity=35.2941176470588, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI157672245, Length=288, Percent_Identity=30.2083333333333, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=176, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788748, Length=178, Percent_Identity=28.0898876404494, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=203, Percent_Identity=30.0492610837438, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787530, Length=219, Percent_Identity=26.9406392694064, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=180, Percent_Identity=31.1111111111111, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693105, Length=173, Percent_Identity=27.7456647398844, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788297, Length=270, Percent_Identity=28.5185185185185, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789506, Length=247, Percent_Identity=23.8866396761134, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33867; Mature: 33867

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENPAASGEALQSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLCELEALSGAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
LVERGRHGARLTAAGEHFLRYAVGATQALDAAAAALGSTGEPTPPVLEIGALPTVASGLL
HHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHH
PEAIAQLHALRPHAGVRLRTGTNADLLAALKAGELDLVVGRMAEPAMMQGLSFELLYAEP
HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCEEEEHHCCCCHHHHCCCCEEEEEECC
LALVVRPDHPLMAEPGASASLPAVLDYPLVISPPGTVPRHHTEALFQTHGLRLPPGVTET
EEEEECCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHH
LSVSVARLLACRSDAVWITPERAARDDMEHGWLVRLDLPTSATKEPVGLLRRSADTPGEL
HHHHHHHHHHHCCCCEEECCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHH
ATAFMTVLASQVQTNATLR
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MENPAASGEALQSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLCELEALSGAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
LVERGRHGARLTAAGEHFLRYAVGATQALDAAAAALGSTGEPTPPVLEIGALPTVASGLL
HHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHH
PEAIAQLHALRPHAGVRLRTGTNADLLAALKAGELDLVVGRMAEPAMMQGLSFELLYAEP
HHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCCEEEEHHCCCCHHHHCCCCEEEEEECC
LALVVRPDHPLMAEPGASASLPAVLDYPLVISPPGTVPRHHTEALFQTHGLRLPPGVTET
EEEEECCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHH
LSVSVARLLACRSDAVWITPERAARDDMEHGWLVRLDLPTSATKEPVGLLRRSADTPGEL
HHHHHHHHHHHCCCCEEECCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHH
ATAFMTVLASQVQTNATLR
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]