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The map label for this gene is yjfH [C]

Identifier: 17546138

GI number: 17546138

Start: 1518852

End: 1519631

Strand: Direct

Name: yjfH [C]

Synonym: RSc1419

Alternate gene names: 17546138

Gene position: 1518852-1519631 (Clockwise)

Preceding gene: 17546137

Following gene: 17546140

Centisome position: 40.87

GC content: 67.82

Gene sequence:

>780_bases
GTGAAGCACATCACCTCTCGCGACAACGCGGTATTCAAGCATTTGAAGGCGCTGTCGGGCTCGACCCAGCAGCGTCGTCG
CGCCGGGCAATCGGTCCTCGACGGCATCCACCTGGTGGCAGCCTACCTGGACGCGGGCCACGTGCCGGCGCAGTGCCTGG
TCTCGGAGCGGCACCTGGCGCATCCCGAGGTGGCGCCGCTGCTCGCGCGTGTCGACCCGCAGGGCATCGTCCTGCTGGCC
GACAGCCTGTTCGCGCAGTTGACGACGGTCGTCAACGGCATCGACCTGATGGCGCTGATCGAGACGCCCGAGGGCCATCT
GCCGCATCGCATCGAGCACGATTGCGTGATCCTCGACGGCATCCAGGACGCCGGCAACGTCGGTTCGATCCTGCGCTGCG
CGGCGGCCGCCGGCGTGCGCGATGTGTTCATGACCACCGGCTGCGCCTTCGCCTGGTCGGCCAAGACGCTGCGCGCGGCG
ATGGGCGCGCACTTCCATCTCAACGTCGTCGAGCATTGCACGTTCGAATCCGTGCATGCGCGCCTGCATGTGCCGCTGCT
GGCGACTTCGTCGCATGCCCGGCACGCCGTGTTCGACATGCCGCTGAATAAGCCGGTCGGCTGGGTGTTCGGCAACGAGG
GGGCGGGCGTTTCGGAGCAGTGGCTGTCGGTGACGACGCCCATCTCGATTCCGCAGCCGGGCGGCATGGAATCACTCAAC
GTGGCTGCCGCCGCGGCCATTTGCCTGTTCGAGGCCGTGCGGCAGCGCCGCATGAACTGA

Upstream 100 bases:

>100_bases
CGCCGCGCGCTGGACGGTGCGCCGCCCCCGGCCGGCGACGCCGTGCCGCAGACCGACGCCAAGACGGCGTGGGCCGACTG
ACCTTCCGCTCCTCCGCCCC

Downstream 100 bases:

>100_bases
ACGTCTCCTTTATGGAATGGCCGCCACTTGGCGGTTTCAAATGCGGGGCGGTTCCGCATGGACTTTGCCGTTGAGCAGTG
GGGCATTTGTGGCGGCGCAT

Product: tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLAHPEVAPLLARVDPQGIVLLA
DSLFAQLTTVVNGIDLMALIETPEGHLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAA
MGAHFHLNVVEHCTFESVHARLHVPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPISIPQPGGMESLN
VAAAAAICLFEAVRQRRMN

Sequences:

>Translated_259_residues
MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLAHPEVAPLLARVDPQGIVLLA
DSLFAQLTTVVNGIDLMALIETPEGHLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAA
MGAHFHLNVVEHCTFESVHARLHVPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPISIPQPGGMESLN
VAAAAAICLFEAVRQRRMN
>Mature_259_residues
MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLAHPEVAPLLARVDPQGIVLLA
DSLFAQLTTVVNGIDLMALIETPEGHLPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAA
MGAHFHLNVVEHCTFESVHARLHVPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPISIPQPGGMESLN
VAAAAAICLFEAVRQRRMN

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=292, Percent_Identity=28.7671232876712, Blast_Score=85, Evalue=7e-17,
Organism=Escherichia coli, GI1790623, Length=238, Percent_Identity=28.9915966386555, Blast_Score=73, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666840, Length=274, Percent_Identity=26.2773722627737, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27808; Mature: 27808

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLA
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
HPEVAPLLARVDPQGIVLLADSLFAQLTTVVNGIDLMALIETPEGHLPHRIEHDCVILDG
CCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEC
IQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCTFESVHA
CCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHH
RLHVPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPISIPQPGGMESLN
EEEEEEEECCCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHEEECCCCCCCCCCCCHHH
VAAAAAICLFEAVRQRRMN
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVPAQCLVSERHLA
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
HPEVAPLLARVDPQGIVLLADSLFAQLTTVVNGIDLMALIETPEGHLPHRIEHDCVILDG
CCHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEC
IQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCTFESVHA
CCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHH
RLHVPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPISIPQPGGMESLN
EEEEEEEECCCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHEEECCCCCCCCCCCCHHH
VAAAAAICLFEAVRQRRMN
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]