| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17546102
Identifier: 17546102
GI number: 17546102
Start: 1474954
End: 1475979
Strand: Direct
Name: 17546102
Synonym: RSc1383
Alternate gene names: NA
Gene position: 1474954-1475979 (Clockwise)
Preceding gene: 17546101
Following gene: 17546103
Centisome position: 39.69
GC content: 73.49
Gene sequence:
>1026_bases ATGACCCACAGCATGGCCCACATCGGCGTGCTGCCGGCTGGCGCGCGCAACAGCATCACGGACGTGGCCGGCATCACGGT CGGGCACGCCACGCTCGCCGGCGGCAGCATCCAGACTGGCGTGACGGTGGTGCGCCCGCATGCCGGCGATCCGTTCCTCG ACAAGGTGCCCGCCGCGTGCGCGGTGCTCAACGGCTTCGGCAAGAGCGTCGGCCTGCTGCAGGTGGAGGAGCTCGGCGTG CTGGAGACGCCCATCGCGCTGACCAACACCTTCGCCGTGGGCGACGTGGCGCGGGCACAGGTCCAGCAGGCGGTCGAGGC GCATCCGCAGATCGGGCGCGCCTGGCCCACCGTCAACCCGCTCGTCTTCGAATGCAACGACGGCTACCTGAACGACCTGC AGTCCTTCGCCGTGCGCGACCTGCACTACTACGCCGCGTGCCTGGCGGCGGGCGGCGCGTTCGCGCAGGGCGCGGTGGGC GCGGGCCGGGGCATGTCGGCGTTCGGCGTGAAGGGGGGGCTCGGCTCGGCCTCGCGCGTGGTCGCGCTGGAGGACGGCAC GCGGCGCACGGTCGGCGCGCTGGTGCTGGCCAACTTCGGCGTCACGGCGAACCTGACGCTGGCCGGCCGCCGCATCGGCG CCGACATCGCCCGCGTGCTGGCCGAGGACGCGCCGGGGCCGGAGAAGGGCTCCATCATCATGCTGCTCGCCACCGATGCG CCGCTCGACGCGCGCCAGCTGCGGCGCGTGGCGCTGCGCGCGGGCGCCGGCCTGGCGCGCACCGGCTCGGTGTTCGGCCA CGGCAGCGGCGACATCGCGCTGGCGTTCTCCACGGCCTACACCGTGCCCCATCTCGGCGCGCGCCCGATGCCGGCCGTCG CCATGACGCACGAGACCCATCTCGACCCGCTGTTCCAGGCCGCCGCCGACAGCGTCGAGCAGGCCATCGTGCATGCCCTT TTCTACGCCGAGACCGTCACCGGCCGTGACGGCCACACGCGGCGTGCCCTGACCGAACTGTTGTAG
Upstream 100 bases:
>100_bases ATCTTCCCGAGCCTCGCCATCTTCCTGACCGTGCTGGCGTTCAACCTGCTGGGCGATGGCCTGCGGGATGCGCTCGACCC CAAGATCGACCGCCGCTGAC
Downstream 100 bases:
>100_bases CCCCCATGCGTATCCTGATTTCCGCCGACATCGAAGGCGTCGCCAATGTCTTCCACCCGGAGCAGACCCGCGCCGGCAAC GCCGAATACGAACGCGCTCG
Product: D-aminopeptidase
Products: NA
Alternate protein names: D-Aminopeptidase; Aminopeptidase DmpA; L-Aminopeptidase/D-Esterase; Aminopeptidase; Peptidase S; T4 Family Peptidase; Peptidase T4 Family; Family; S58 Family Peptidase; L-Aminopeptidase DmpA; D-Amino Peptidase Dmpa Family; Serine Peptidase; L-Aminopeptidase Dmpa; Aminopeptidase DpmA; D-Alanine-D-Alanine Ligase / Aminopeptidase; Peptidase Family; Aminopeptidase-Like Protein; D-Aminopeptidease; D-AMINO PEPTIDASE DmpA Family; L-Aminopeptidase D-Ala-Esterase/Amidase
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MTHSMAHIGVLPAGARNSITDVAGITVGHATLAGGSIQTGVTVVRPHAGDPFLDKVPAACAVLNGFGKSVGLLQVEELGV LETPIALTNTFAVGDVARAQVQQAVEAHPQIGRAWPTVNPLVFECNDGYLNDLQSFAVRDLHYYAACLAAGGAFAQGAVG AGRGMSAFGVKGGLGSASRVVALEDGTRRTVGALVLANFGVTANLTLAGRRIGADIARVLAEDAPGPEKGSIIMLLATDA PLDARQLRRVALRAGAGLARTGSVFGHGSGDIALAFSTAYTVPHLGARPMPAVAMTHETHLDPLFQAAADSVEQAIVHAL FYAETVTGRDGHTRRALTELL
Sequences:
>Translated_341_residues MTHSMAHIGVLPAGARNSITDVAGITVGHATLAGGSIQTGVTVVRPHAGDPFLDKVPAACAVLNGFGKSVGLLQVEELGV LETPIALTNTFAVGDVARAQVQQAVEAHPQIGRAWPTVNPLVFECNDGYLNDLQSFAVRDLHYYAACLAAGGAFAQGAVG AGRGMSAFGVKGGLGSASRVVALEDGTRRTVGALVLANFGVTANLTLAGRRIGADIARVLAEDAPGPEKGSIIMLLATDA PLDARQLRRVALRAGAGLARTGSVFGHGSGDIALAFSTAYTVPHLGARPMPAVAMTHETHLDPLFQAAADSVEQAIVHAL FYAETVTGRDGHTRRALTELL >Mature_340_residues THSMAHIGVLPAGARNSITDVAGITVGHATLAGGSIQTGVTVVRPHAGDPFLDKVPAACAVLNGFGKSVGLLQVEELGVL ETPIALTNTFAVGDVARAQVQQAVEAHPQIGRAWPTVNPLVFECNDGYLNDLQSFAVRDLHYYAACLAAGGAFAQGAVGA GRGMSAFGVKGGLGSASRVVALEDGTRRTVGALVLANFGVTANLTLAGRRIGADIARVLAEDAPGPEKGSIIMLLATDAP LDARQLRRVALRAGAGLARTGSVFGHGSGDIALAFSTAYTVPHLGARPMPAVAMTHETHLDPLFQAAADSVEQAIVHALF YAETVTGRDGHTRRALTELL
Specific function: Unknown
COG id: COG3191
COG function: function code EQ; L-aminopeptidase/D-esterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35030; Mature: 34899
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHSMAHIGVLPAGARNSITDVAGITVGHATLAGGSIQTGVTVVRPHAGDPFLDKVPAAC CCCCCCEEEEECCCCCCCCHHHHCEEECCCEECCCCEECCEEEEECCCCCCHHHHHHHHH AVLNGFGKSVGLLQVEELGVLETPIALTNTFAVGDVARAQVQQAVEAHPQIGRAWPTVNP HHHHHCCCCCCEEEEHHCCCCCCCHHHCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCC LVFECNDGYLNDLQSFAVRDLHYYAACLAAGGAFAQGAVGAGRGMSAFGVKGGLGSASRV EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEE VALEDGTRRTVGALVLANFGVTANLTLAGRRIGADIARVLAEDAPGPEKGSIIMLLATDA EEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC PLDARQLRRVALRAGAGLARTGSVFGHGSGDIALAFSTAYTVPHLGARPMPAVAMTHETH CCCHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEECCHHH LDPLFQAAADSVEQAIVHALFYAETVTGRDGHTRRALTELL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC >Mature Secondary Structure THSMAHIGVLPAGARNSITDVAGITVGHATLAGGSIQTGVTVVRPHAGDPFLDKVPAAC CCCCCEEEEECCCCCCCCHHHHCEEECCCEECCCCEECCEEEEECCCCCCHHHHHHHHH AVLNGFGKSVGLLQVEELGVLETPIALTNTFAVGDVARAQVQQAVEAHPQIGRAWPTVNP HHHHHCCCCCCEEEEHHCCCCCCCHHHCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCC LVFECNDGYLNDLQSFAVRDLHYYAACLAAGGAFAQGAVGAGRGMSAFGVKGGLGSASRV EEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEE VALEDGTRRTVGALVLANFGVTANLTLAGRRIGADIARVLAEDAPGPEKGSIIMLLATDA EEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCC PLDARQLRRVALRAGAGLARTGSVFGHGSGDIALAFSTAYTVPHLGARPMPAVAMTHETH CCCHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEECCHHH LDPLFQAAADSVEQAIVHALFYAETVTGRDGHTRRALTELL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA