| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yeaZ [H]
Identifier: 17546086
GI number: 17546086
Start: 1456302
End: 1457033
Strand: Direct
Name: yeaZ [H]
Synonym: RSc1367
Alternate gene names: 17546086
Gene position: 1456302-1457033 (Clockwise)
Preceding gene: 17546084
Following gene: 17546087
Centisome position: 39.19
GC content: 74.73
Gene sequence:
>732_bases ATGCCCTGGATCCTTGCCTTCGATACTTCCACCGAATTCTGTTCCGTTGCCCTCGGTGACGGCACGCGCACGCTGTTTCG CCACGAACACACCGGCGCGCGCTCCAGCAGCCGCGTGCTGCCCGCCGCCGGCGAACTGCTGGCCGAAGCCGGCATCGCCC TGGGCGACTGCGCGGCCATCGCGTTCGGCGCCGGGCCCGGTTCGTTCACCGGCCTGCGGACCGCATGCGGCGTGGCGCAG GGCCTGGCCTTCGGCGCCGGCCTGCCGGTGGTGCAGGTCAACTCGCTGATGGCCTGCGCCGAGCAGACGCGCGCCGCGCT GCCGGCCGGCACCGCCGTCACCGTGGCGCTGGATGCCCGCATGGACGAGTGCTACTGGGCCAGCTTCGTGCCCGTGGCCG AAGACGCCTCCGGCTGGCACGCGCTGTCGGCCGTCCAGGTGAGCGCGCCGCAGGCCGTGGCGCCGCCGCAGCAGCCGTAC TGGCTGGCGGGCAACGCCGCCGCGGTGTTCGGTGATCGGCTCGCTGCCGCGACCGGCGCGGCCGCCGTGCTGCCCGACGT GGCGCCGCACGCGCGCGAGATCGTCACCCTCGGGCTGCGCCTGCTGGCCGCCGGCCACACGGTGCGCCCGGAAGACGCCG CGCCGCTGTACGTGCGCGACAAGGTCGCGCTGACCATCGAAGAGCGCCAGGCCGTGCAGCAGGCCAAGGCCGCAGCGGGT GCGCGGGCATGA
Upstream 100 bases:
>100_bases GCCGGCCGGGCCGTTTGAATTCGAGGATGCCCTCGGTTTTCGCGCGCGGTCGTCGCCCGCCGGCGGGGCCAGGCGGGGCA CCAGCCGGTACAATGCCGCC
Downstream 100 bases:
>100_bases GCCAGGTCCAGGTCGACCGGGCCCTCGCCGGCCTCATTGTCCGCGCGCCGCTGCCCGCCGGCTGGCGCGCCGAGCGGATG TCCGCGCTGGACGTGGCCGC
Product: transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 242
Protein sequence:
>243_residues MPWILAFDTSTEFCSVALGDGTRTLFRHEHTGARSSSRVLPAAGELLAEAGIALGDCAAIAFGAGPGSFTGLRTACGVAQ GLAFGAGLPVVQVNSLMACAEQTRAALPAGTAVTVALDARMDECYWASFVPVAEDASGWHALSAVQVSAPQAVAPPQQPY WLAGNAAAVFGDRLAAATGAAAVLPDVAPHAREIVTLGLRLLAAGHTVRPEDAAPLYVRDKVALTIEERQAVQQAKAAAG ARA
Sequences:
>Translated_243_residues MPWILAFDTSTEFCSVALGDGTRTLFRHEHTGARSSSRVLPAAGELLAEAGIALGDCAAIAFGAGPGSFTGLRTACGVAQ GLAFGAGLPVVQVNSLMACAEQTRAALPAGTAVTVALDARMDECYWASFVPVAEDASGWHALSAVQVSAPQAVAPPQQPY WLAGNAAAVFGDRLAAATGAAAVLPDVAPHAREIVTLGLRLLAAGHTVRPEDAAPLYVRDKVALTIEERQAVQQAKAAAG ARA >Mature_242_residues PWILAFDTSTEFCSVALGDGTRTLFRHEHTGARSSSRVLPAAGELLAEAGIALGDCAAIAFGAGPGSFTGLRTACGVAQG LAFGAGLPVVQVNSLMACAEQTRAALPAGTAVTVALDARMDECYWASFVPVAEDASGWHALSAVQVSAPQAVAPPQQPYW LAGNAAAVFGDRLAAATGAAAVLPDVAPHAREIVTLGLRLLAAGHTVRPEDAAPLYVRDKVALTIEERQAVQQAKAAAGA RA
Specific function: Unknown
COG id: COG1214
COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M22 family [H]
Homologues:
Organism=Escherichia coli, GI1788109, Length=233, Percent_Identity=39.4849785407725, Blast_Score=124, Evalue=6e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022496 - InterPro: IPR000905 [H]
Pfam domain/function: PF00814 Peptidase_M22 [H]
EC number: NA
Molecular weight: Translated: 24767; Mature: 24636
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPWILAFDTSTEFCSVALGDGTRTLFRHEHTGARSSSRVLPAAGELLAEAGIALGDCAAI CCEEEEECCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEE AFGAGPGSFTGLRTACGVAQGLAFGAGLPVVQVNSLMACAEQTRAALPAGTAVTVALDAR EECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC MDECYWASFVPVAEDASGWHALSAVQVSAPQAVAPPQQPYWLAGNAAAVFGDRLAAATGA CCCHHHEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCC AAVLPDVAPHAREIVTLGLRLLAAGHTVRPEDAAPLYVRDKVALTIEERQAVQQAKAAAG HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEEEEEHHHHHHHHHHHHCC ARA CCC >Mature Secondary Structure PWILAFDTSTEFCSVALGDGTRTLFRHEHTGARSSSRVLPAAGELLAEAGIALGDCAAI CEEEEECCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEE AFGAGPGSFTGLRTACGVAQGLAFGAGLPVVQVNSLMACAEQTRAALPAGTAVTVALDAR EECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC MDECYWASFVPVAEDASGWHALSAVQVSAPQAVAPPQQPYWLAGNAAAVFGDRLAAATGA CCCHHHEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCC AAVLPDVAPHAREIVTLGLRLLAAGHTVRPEDAAPLYVRDKVALTIEERQAVQQAKAAAG HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECEEEEEEHHHHHHHHHHHHCC ARA CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]