| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is ylaK [H]
Identifier: 17546035
GI number: 17546035
Start: 1400509
End: 1402227
Strand: Reverse
Name: ylaK [H]
Synonym: RSc1316
Alternate gene names: 17546035
Gene position: 1402227-1400509 (Counterclockwise)
Preceding gene: 17546036
Following gene: 17546034
Centisome position: 37.73
GC content: 66.2
Gene sequence:
>1719_bases ATGCCGCTGCCGACCATGCCCACCCAGCCAGCCCAGCTGCTCGACCCGGCTGAATTCAAGCCTTTCGGCAAAGCCGCAAG GCCCAAGGCGGGTCAGGAGCCTCGAAAACCGGTGCCCGCCCTCGAGCGCGAAGCACTGTCCGAAACCGGCCGCGCACAAC CCAAACGCAGCCCCGCCCAGGCCCGCCTCGGCGAGGCGTCGCCCATGGCCAAGGACGACGCGCGCCAACGCCCCGCCGTC ATCGCCAAGGCCGTCGACAAGGTCGGCGCGACGGACAAATCGACCGAAACCGCCGCCCGCCGCCGGGCACGCCGCGACGA TGGGCCGACCAAGCTCTTCGTGCTGGACACCAACGTGCTGATGCACGATCCGTCCTCGCTGTTCCGCTTCGAGGAGCACG ACGTCTATCTGCCCATGATGACGCTGGAGGAGTTGGACAACCACAAGAAGGGCATGAGCGAAGTCGCGCGCAACGCCCGC GCGGTCAGCCGCACGCTCGACCAACTGGTGGCCGGCACCGACGGCGTGATGGAGGACGGCCTGCCGCTGGCCAAGCTGGG CAACCGCGACGCGCAGGGCCACCTGTTCTTCCAGACCCGTCTGAACGACATCAAGCTGCCCGATGGCCTGCCGCAGGGCA AGGCGGACAACCAGATCCTGGGCGTGGTGTCCGCGCTGCAGCAGCAGCGCCCCGACCGCCATGTCGTGCTGGTGTCGAAA GACATCAACATGCGGATCAAGGCGCGCGCCCTCGGCCTGCCGGCGGAGGACTACTTCAACGACCGCGTGCTGGAAGACAC CGACCTGCTCTACAGCGGCGTGATGTCCCTGCCCGCCGATTTCTGGCAGAAGCACGGCAAGAACATCGAAAGCTGGCAAG ACCCGAAGGTCGGCACGACGTTCTACCGGCTGTCGGGCCCGCTGGTGCCCTCGTTCCTGGTCAACCAGTTCGTCTTCCTG GAGCCCAACGACGGCAGCCTGCCGCTGTACGCACAGGTCAAGGAGCTCAACGGCAAGACCGCCGTGCTGCAGACGCTGAA GGACTATACGCACCAGAAGAACAACGTCTGGGGCGTGACCGCGCGCAACCGCGAGCAGAACTTCGCGCTCAACCTGCTGA TGCATCCCGAGATCGATTTCGTCTCGCTGCTGGGCCAGGCCGGCACCGGCAAGACGCTGCTCGCGCTCGCCGCCGGGCTC GAGCAGGTGCTCGACCAGAAGCTCTACAACGAGATCATCATCACGCGGGCCACGGTGCCGGTGGGCGAAGACATCGGCTT CCTGCCGGGCACGGAGGAAGAGAAGATGCAGCCCTGGATGGGCGCCTTCGACGACAACCTCGAGGTGCTGCAGAAATCCG ACGACAACGCCGGCGAATGGGGCCGCGCGGCGACCCAGGAGCTGATCCGCTCGCGCATCAAGGTCAAGAGCATGAACTTC ATGCGCGGCCGCACCTTCGTCAACAAGTTCCTGATCATCGACGAAGCCCAGAACCTGACGCCCAAGCAGATGAAGACCCT GGTCACGCGCGCGGGCCCGGGCACCAAGATCGTGTGCCTGGGGAACATCGCGCAGATCGATACGCCCTACCTCACCGAAG GGTCATCGGGCCTGACCTACGTGGTGGACCGCTTCAAGGGCTGGAGCCATGGCGGCCACATCACGCTGGCGCGCGGCGAA CGCTCGCGCCTGGCGGATCACGCGTCGGACGTGCTCTAG
Upstream 100 bases:
>100_bases CGCCACCGCCACGGCGCTTCTCCCCATTTCCATCTGCACCGCCCCGCCGACAACGGGTGCGGTGTTCCGTTGTCGTTCCC TCCAGAGAGGTAATCCAAGC
Downstream 100 bases:
>100_bases CCACCACAAGGCAGTCGCCCGGCCGGCTGCCGACCTTGCTGCCATGGGGCCGCGCGTTTGCGCGGCCTTTTTTTTGCTGC TCACTGGGTACTCCCTTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 572; Mature: 571
Protein sequence:
>572_residues MPLPTMPTQPAQLLDPAEFKPFGKAARPKAGQEPRKPVPALEREALSETGRAQPKRSPAQARLGEASPMAKDDARQRPAV IAKAVDKVGATDKSTETAARRRARRDDGPTKLFVLDTNVLMHDPSSLFRFEEHDVYLPMMTLEELDNHKKGMSEVARNAR AVSRTLDQLVAGTDGVMEDGLPLAKLGNRDAQGHLFFQTRLNDIKLPDGLPQGKADNQILGVVSALQQQRPDRHVVLVSK DINMRIKARALGLPAEDYFNDRVLEDTDLLYSGVMSLPADFWQKHGKNIESWQDPKVGTTFYRLSGPLVPSFLVNQFVFL EPNDGSLPLYAQVKELNGKTAVLQTLKDYTHQKNNVWGVTARNREQNFALNLLMHPEIDFVSLLGQAGTGKTLLALAAGL EQVLDQKLYNEIIITRATVPVGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKSDDNAGEWGRAATQELIRSRIKVKSMNF MRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWSHGGHITLARGE RSRLADHASDVL
Sequences:
>Translated_572_residues MPLPTMPTQPAQLLDPAEFKPFGKAARPKAGQEPRKPVPALEREALSETGRAQPKRSPAQARLGEASPMAKDDARQRPAV IAKAVDKVGATDKSTETAARRRARRDDGPTKLFVLDTNVLMHDPSSLFRFEEHDVYLPMMTLEELDNHKKGMSEVARNAR AVSRTLDQLVAGTDGVMEDGLPLAKLGNRDAQGHLFFQTRLNDIKLPDGLPQGKADNQILGVVSALQQQRPDRHVVLVSK DINMRIKARALGLPAEDYFNDRVLEDTDLLYSGVMSLPADFWQKHGKNIESWQDPKVGTTFYRLSGPLVPSFLVNQFVFL EPNDGSLPLYAQVKELNGKTAVLQTLKDYTHQKNNVWGVTARNREQNFALNLLMHPEIDFVSLLGQAGTGKTLLALAAGL EQVLDQKLYNEIIITRATVPVGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKSDDNAGEWGRAATQELIRSRIKVKSMNF MRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWSHGGHITLARGE RSRLADHASDVL >Mature_571_residues PLPTMPTQPAQLLDPAEFKPFGKAARPKAGQEPRKPVPALEREALSETGRAQPKRSPAQARLGEASPMAKDDARQRPAVI AKAVDKVGATDKSTETAARRRARRDDGPTKLFVLDTNVLMHDPSSLFRFEEHDVYLPMMTLEELDNHKKGMSEVARNARA VSRTLDQLVAGTDGVMEDGLPLAKLGNRDAQGHLFFQTRLNDIKLPDGLPQGKADNQILGVVSALQQQRPDRHVVLVSKD INMRIKARALGLPAEDYFNDRVLEDTDLLYSGVMSLPADFWQKHGKNIESWQDPKVGTTFYRLSGPLVPSFLVNQFVFLE PNDGSLPLYAQVKELNGKTAVLQTLKDYTHQKNNVWGVTARNREQNFALNLLMHPEIDFVSLLGQAGTGKTLLALAAGLE QVLDQKLYNEIIITRATVPVGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKSDDNAGEWGRAATQELIRSRIKVKSMNFM RGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFKGWSHGGHITLARGER SRLADHASDVL
Specific function: Unknown
COG id: COG1875
COG function: function code T; Predicted ATPase related to phosphate starvation-inducible protein PhoH
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PINc domain [H]
Homologues:
Organism=Escherichia coli, GI1787257, Length=191, Percent_Identity=33.5078534031414, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI145693103, Length=178, Percent_Identity=38.2022471910112, Blast_Score=93, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 - InterPro: IPR006596 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 63396; Mature: 63265
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLPTMPTQPAQLLDPAEFKPFGKAARPKAGQEPRKPVPALEREALSETGRAQPKRSPAQ CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHH ARLGEASPMAKDDARQRPAVIAKAVDKVGATDKSTETAARRRARRDDGPTKLFVLDTNVL HHCCCCCCCCCHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCEE MHDPSSLFRFEEHDVYLPMMTLEELDNHKKGMSEVARNARAVSRTLDQLVAGTDGVMEDG EECCHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC LPLAKLGNRDAQGHLFFQTRLNDIKLPDGLPQGKADNQILGVVSALQQQRPDRHVVLVSK CCHHHHCCCCCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC DINMRIKARALGLPAEDYFNDRVLEDTDLLYSGVMSLPADFWQKHGKNIESWQDPKVGTT CCCEEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCE FYRLSGPLVPSFLVNQFVFLEPNDGSLPLYAQVKELNGKTAVLQTLKDYTHQKNNVWGVT EEEECCCCHHHHHHCCEEEEECCCCCCCCEEHHHHCCCHHHHHHHHHHHHCCCCCEEEEE ARNREQNFALNLLMHPEIDFVSLLGQAGTGKTLLALAAGLEQVLDQKLYNEIIITRATVP ECCCCCCEEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCC VGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKSDDNAGEWGRAATQELIRSRIKVKSMNF CCCCCCCCCCCCHHHCCCHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH MRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTY HHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCCCCCHHH VVDRFKGWSHGGHITLARGERSRLADHASDVL HHHHHCCCCCCCEEEEECCCHHHHHHHHHCCC >Mature Secondary Structure PLPTMPTQPAQLLDPAEFKPFGKAARPKAGQEPRKPVPALEREALSETGRAQPKRSPAQ CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHH ARLGEASPMAKDDARQRPAVIAKAVDKVGATDKSTETAARRRARRDDGPTKLFVLDTNVL HHCCCCCCCCCHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCEE MHDPSSLFRFEEHDVYLPMMTLEELDNHKKGMSEVARNARAVSRTLDQLVAGTDGVMEDG EECCHHHHEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC LPLAKLGNRDAQGHLFFQTRLNDIKLPDGLPQGKADNQILGVVSALQQQRPDRHVVLVSK CCHHHHCCCCCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC DINMRIKARALGLPAEDYFNDRVLEDTDLLYSGVMSLPADFWQKHGKNIESWQDPKVGTT CCCEEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCE FYRLSGPLVPSFLVNQFVFLEPNDGSLPLYAQVKELNGKTAVLQTLKDYTHQKNNVWGVT EEEECCCCHHHHHHCCEEEEECCCCCCCCEEHHHHCCCHHHHHHHHHHHHCCCCCEEEEE ARNREQNFALNLLMHPEIDFVSLLGQAGTGKTLLALAAGLEQVLDQKLYNEIIITRATVP ECCCCCCEEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCC VGEDIGFLPGTEEEKMQPWMGAFDDNLEVLQKSDDNAGEWGRAATQELIRSRIKVKSMNF CCCCCCCCCCCCHHHCCCHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH MRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTY HHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCCCCCCCHHH VVDRFKGWSHGGHITLARGERSRLADHASDVL HHHHHCCCCCCCEEEEECCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]