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The map label for this gene is ugpB [H]

Identifier: 17545983

GI number: 17545983

Start: 1343321

End: 1344637

Strand: Direct

Name: ugpB [H]

Synonym: RSc1264

Alternate gene names: 17545983

Gene position: 1343321-1344637 (Clockwise)

Preceding gene: 17545980

Following gene: 17545984

Centisome position: 36.15

GC content: 65.76

Gene sequence:

>1317_bases
ATGATGATCCGGAAGATTGCGGGGGCAGTGGCCGTGCTGGCGGCCTGCACGTTTGCGCAGGCCGCGCATGCCGTGACCGA
GATTCAGTGGTGGCACTCGATGGAGGGCGCCCTGAACGACAAGGTGAACGAGCTTGCCAACAAGTTCAACGCCAGCCAGC
CCGACTACAAGGTCGTGCCCGTCTACAAGGGCCAGTACGACGAATCGCTGGCCGCCGGCATCGCGGCCTTCCGCGCCGGC
AACGCGCCGGCCATCCTGCAGGTCTTCGAGGTCGGCACCGCGACCATGATGAACGCCCGCGGCGCCATCGTGCCGATCGC
CAAGGTGATGAAGGACGCCGGCGAGAAGTTCGACCCCAAGGCCTACGTGCCGGCGGTGGCGGGCTACTACACGTCGAACA
AGGGAGACATGCTGTCGTTCCCGTTCAACAGCTCGACGACGATCCTGTACTACAACAAGGACGCCTTCAAGAAGGCCGGC
CTCGACCCGAACAAGCCGCCCGCGACGTGGCAGGAGGTCGCCATCGACGCGGCCAAGCTCAAGGCGGCCGGCTTCGCGTG
CGGCTACACCACCGACTGGCAGTCGTGGGTGCACCTGGAGAGCTTCTCGGCGTGGCACAACGTGGCGTTCGCGACCGAGA
ACAACGGCTTCGGCGGCGCGAAGGCGCGCCTGATCTTCAACGGTCCGGTGCAGGTGCAGCACATCGAGCATCTGCTCGAC
ATGGAGAAGAAGGGCTACTTCACCTATGCCGGCCGCAAGGACGAGCCCAAGGCCAAGTTCATCGCGGGCGAGTGCGCCAT
GCACACCGGCTCGTCGGCGGCGCTGGCCAACATCCGCAAGAACGCCAGGTTCAGCTTCAGCCCCGCGCCGCTGCCGTACG
AGGCGGGCGTGCCGGGCGCGCCGCAGAACACCATCATCGGCGGCGCCTCGCTGTGGGTGATGGGCGGCCACAAGCCCGAA
GAGTACAAGGGTGTCGCCCGGTTCTTCTCCTTCCTGTCGCGCCCCGAGATCCAGTCCGACTGGCACCAGTCGACCGGCTA
CCTGCCGGTGACGATGCAAGCGTACGAACTGACCCGGCAGTCGGGCTTCTATGACAAGAACCCGGGCGCCGACGTGGCCG
TCAAGCAGATGATCGTCAGGACGACCGACAAGTCGCGCGGCATCCGCCTGGGCAACTTCCCGCAGATCCGCTCGGTGATC
GACGAAGAACTCGAAGCCGTGTGGGCGGGCAAGAAGTCGCCGAAGGAAGCGCTGGACAGCGCGGTCGCGCGCGGCAACGA
TCTGCTGGCCCGCTTCGAGAAGACCGTCAAGGAGTAA

Upstream 100 bases:

>100_bases
AACATGCCGCTGTCATAAAAAATGCCCGACCGGCCGGATAGAGTCGGGCGCGTCGCGGGCCGGCAAAGGCCCGCCGGGAA
GCCATAACCGAGGAGGAGCG

Downstream 100 bases:

>100_bases
GCGCGCGGTTGCGCGTGCCGTCAGCCGCCGGTCCCGCATGCGCGGGGGCGGCGGCGCGTTTTGGGAATCCCCATGGAAAA
ACGGGTCGTATTCCGGTCGC

Product: glycerol-3-phosphate-binding periplasmic lipoprotein signal peptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MMIRKIAGAVAVLAACTFAQAAHAVTEIQWWHSMEGALNDKVNELANKFNASQPDYKVVPVYKGQYDESLAAGIAAFRAG
NAPAILQVFEVGTATMMNARGAIVPIAKVMKDAGEKFDPKAYVPAVAGYYTSNKGDMLSFPFNSSTTILYYNKDAFKKAG
LDPNKPPATWQEVAIDAAKLKAAGFACGYTTDWQSWVHLESFSAWHNVAFATENNGFGGAKARLIFNGPVQVQHIEHLLD
MEKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNARFSFSPAPLPYEAGVPGAPQNTIIGGASLWVMGGHKPE
EYKGVARFFSFLSRPEIQSDWHQSTGYLPVTMQAYELTRQSGFYDKNPGADVAVKQMIVRTTDKSRGIRLGNFPQIRSVI
DEELEAVWAGKKSPKEALDSAVARGNDLLARFEKTVKE

Sequences:

>Translated_438_residues
MMIRKIAGAVAVLAACTFAQAAHAVTEIQWWHSMEGALNDKVNELANKFNASQPDYKVVPVYKGQYDESLAAGIAAFRAG
NAPAILQVFEVGTATMMNARGAIVPIAKVMKDAGEKFDPKAYVPAVAGYYTSNKGDMLSFPFNSSTTILYYNKDAFKKAG
LDPNKPPATWQEVAIDAAKLKAAGFACGYTTDWQSWVHLESFSAWHNVAFATENNGFGGAKARLIFNGPVQVQHIEHLLD
MEKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNARFSFSPAPLPYEAGVPGAPQNTIIGGASLWVMGGHKPE
EYKGVARFFSFLSRPEIQSDWHQSTGYLPVTMQAYELTRQSGFYDKNPGADVAVKQMIVRTTDKSRGIRLGNFPQIRSVI
DEELEAVWAGKKSPKEALDSAVARGNDLLARFEKTVKE
>Mature_438_residues
MMIRKIAGAVAVLAACTFAQAAHAVTEIQWWHSMEGALNDKVNELANKFNASQPDYKVVPVYKGQYDESLAAGIAAFRAG
NAPAILQVFEVGTATMMNARGAIVPIAKVMKDAGEKFDPKAYVPAVAGYYTSNKGDMLSFPFNSSTTILYYNKDAFKKAG
LDPNKPPATWQEVAIDAAKLKAAGFACGYTTDWQSWVHLESFSAWHNVAFATENNGFGGAKARLIFNGPVQVQHIEHLLD
MEKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNARFSFSPAPLPYEAGVPGAPQNTIIGGASLWVMGGHKPE
EYKGVARFFSFLSRPEIQSDWHQSTGYLPVTMQAYELTRQSGFYDKNPGADVAVKQMIVRTTDKSRGIRLGNFPQIRSVI
DEELEAVWAGKKSPKEALDSAVARGNDLLARFEKTVKE

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=418, Percent_Identity=60.2870813397129, Blast_Score=528, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47829; Mature: 47829

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIRKIAGAVAVLAACTFAQAAHAVTEIQWWHSMEGALNDKVNELANKFNASQPDYKVVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEE
VYKGQYDESLAAGIAAFRAGNAPAILQVFEVGTATMMNARGAIVPIAKVMKDAGEKFDPK
EECCCCHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHCCCCCHHHHHHHHHHCCCCCCCC
AYVPAVAGYYTSNKGDMLSFPFNSSTTILYYNKDAFKKAGLDPNKPPATWQEVAIDAAKL
CCCCHHHCEEECCCCCEEEECCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHH
KAAGFACGYTTDWQSWVHLESFSAWHNVAFATENNGFGGAKARLIFNGPVQVQHIEHLLD
HHCCEECCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHH
MEKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNARFSFSPAPLPYEAGVPGA
HHHCCEEEECCCCCCCCHHEEECHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PQNTIIGGASLWVMGGHKPEEYKGVARFFSFLSRPEIQSDWHQSTGYLPVTMQAYELTRQ
CCCCEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEHHHHHHHHH
SGFYDKNPGADVAVKQMIVRTTDKSRGIRLGNFPQIRSVIDEELEAVWAGKKSPKEALDS
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVARGNDLLARFEKTVKE
HHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MMIRKIAGAVAVLAACTFAQAAHAVTEIQWWHSMEGALNDKVNELANKFNASQPDYKVVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEE
VYKGQYDESLAAGIAAFRAGNAPAILQVFEVGTATMMNARGAIVPIAKVMKDAGEKFDPK
EECCCCHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHCCCCCHHHHHHHHHHCCCCCCCC
AYVPAVAGYYTSNKGDMLSFPFNSSTTILYYNKDAFKKAGLDPNKPPATWQEVAIDAAKL
CCCCHHHCEEECCCCCEEEECCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHH
KAAGFACGYTTDWQSWVHLESFSAWHNVAFATENNGFGGAKARLIFNGPVQVQHIEHLLD
HHCCEECCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHH
MEKKGYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNARFSFSPAPLPYEAGVPGA
HHHCCEEEECCCCCCCCHHEEECHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PQNTIIGGASLWVMGGHKPEEYKGVARFFSFLSRPEIQSDWHQSTGYLPVTMQAYELTRQ
CCCCEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEHHHHHHHHH
SGFYDKNPGADVAVKQMIVRTTDKSRGIRLGNFPQIRSVIDEELEAVWAGKKSPKEALDS
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVARGNDLLARFEKTVKE
HHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA