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The map label for this gene is ylbK [H]

Identifier: 17545897

GI number: 17545897

Start: 1238931

End: 1239890

Strand: Reverse

Name: ylbK [H]

Synonym: RSc1178

Alternate gene names: 17545897

Gene position: 1239890-1238931 (Counterclockwise)

Preceding gene: 17545899

Following gene: 17545891

Centisome position: 33.36

GC content: 69.79

Gene sequence:

>960_bases
ATGCAACGCCGTCTCTTCCTGGGCGCCGCCGGCGCCTCCCTGCTCTCCGCCTGTACCGTCACGGGCTTCTCATCGTCGTC
GGGCAGCAAGAACGCCCCCGCGCTGGCCACGGCGGTCGTGCCGCCCGAATCGCAGCCGGCCGTGCCACCGGTGCGCATCG
GCCTGGCGCTGGGCGGCGGCGCCGCGCGCGGCTTCGCGCACATCGGCGTGATCAAGGCGCTGGAAGCCCAGGGCATCCAG
ATCGATTTCATCACGGGCACCAGCGCAGGCAGCGTGGTGGCGGCCCTCTACGCGTCGGGCATGTCGGGCATCGAACTGAA
CCGGCAGGCGCTGAAGATGGACGAGGCGACGATCGCGGACTGGGCGCTGCCCTTCGGCACGCGCTTCGGCGGCTGGCTCA
AGGGCGAGGCGCTGGAGAAATACGTCAACCGCCTGGTCAAGCAGAAGACCATCGAGCAGATGCGCATTCCGCTGGGCATC
GTCGCCACGGACCTGGGCAGCGGCAGGCCGATCCTGTTCCGCCGCGGCAATACCGGCCAAGCCGTGCGGGCATCCTGCAG
CATCCCGGGCGTGTTCCAGCCGGTGACGATCAGCGGCCACCAATACGTGGACGGCGGCCTGGTGGCGCCGGTGCCCGTCA
CCTACGCCAAGCAGATGGGGGCGACCTTCGTGATCGCGGTGAACATCTCGGCGGACCCGTCGGCGCAGGCGGTGTCCGGC
CAGGCCAGCATGCTGCTGCAGACCACGACGATCATGGGCCAGAGCATCAACAAGACGGAACTGGCGCAGGCGGACGTGGT
GATCGCCCCGTCGCTGCCGTTCGTCAAGGGCAGCGATTTCACGGCACGCAACGAAGCCATCCTCGGCGGCGAACAGGCCG
CCCTGGCGGCCATGCCGCTGCTGCGCGAAAAGCTGCGCCTGCCGCAGACGGCCCAGGCCACGCCGCTGCCGCCGCATTGA

Upstream 100 bases:

>100_bases
CGCCCGACCGGTCCGCCGCCGAACTTTGGCACAATGGCGACCGGCCCGCGTCCGCCCATGATGGCTCCGCGCGTCCCACC
CAGAACTGCCCCAACCGTCC

Downstream 100 bases:

>100_bases
CCGGCGCCGGAGACAGGCAACAAAAAAGACCGCCGCGGCGGTCTTCTTTCTTGGGGTCCGGGTATCGAGCGGATCAGCCG
CCGTACATCGAGAGCGACTT

Product: lipoprotein transmembrane

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MQRRLFLGAAGASLLSACTVTGFSSSSGSKNAPALATAVVPPESQPAVPPVRIGLALGGGAARGFAHIGVIKALEAQGIQ
IDFITGTSAGSVVAALYASGMSGIELNRQALKMDEATIADWALPFGTRFGGWLKGEALEKYVNRLVKQKTIEQMRIPLGI
VATDLGSGRPILFRRGNTGQAVRASCSIPGVFQPVTISGHQYVDGGLVAPVPVTYAKQMGATFVIAVNISADPSAQAVSG
QASMLLQTTTIMGQSINKTELAQADVVIAPSLPFVKGSDFTARNEAILGGEQAALAAMPLLREKLRLPQTAQATPLPPH

Sequences:

>Translated_319_residues
MQRRLFLGAAGASLLSACTVTGFSSSSGSKNAPALATAVVPPESQPAVPPVRIGLALGGGAARGFAHIGVIKALEAQGIQ
IDFITGTSAGSVVAALYASGMSGIELNRQALKMDEATIADWALPFGTRFGGWLKGEALEKYVNRLVKQKTIEQMRIPLGI
VATDLGSGRPILFRRGNTGQAVRASCSIPGVFQPVTISGHQYVDGGLVAPVPVTYAKQMGATFVIAVNISADPSAQAVSG
QASMLLQTTTIMGQSINKTELAQADVVIAPSLPFVKGSDFTARNEAILGGEQAALAAMPLLREKLRLPQTAQATPLPPH
>Mature_319_residues
MQRRLFLGAAGASLLSACTVTGFSSSSGSKNAPALATAVVPPESQPAVPPVRIGLALGGGAARGFAHIGVIKALEAQGIQ
IDFITGTSAGSVVAALYASGMSGIELNRQALKMDEATIADWALPFGTRFGGWLKGEALEKYVNRLVKQKTIEQMRIPLGI
VATDLGSGRPILFRRGNTGQAVRASCSIPGVFQPVTISGHQYVDGGLVAPVPVTYAKQMGATFVIAVNISADPSAQAVSG
QASMLLQTTTIMGQSINKTELAQADVVIAPSLPFVKGSDFTARNEAILGGEQAALAAMPLLREKLRLPQTAQATPLPPH

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656043, Length=199, Percent_Identity=33.1658291457286, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI260656037, Length=199, Percent_Identity=33.1658291457286, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI260656041, Length=199, Percent_Identity=33.1658291457286, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI260656039, Length=199, Percent_Identity=33.1658291457286, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI116256487, Length=199, Percent_Identity=33.1658291457286, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI148727335, Length=247, Percent_Identity=29.5546558704453, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI148727290, Length=247, Percent_Identity=29.5546558704453, Blast_Score=92, Evalue=5e-19,
Organism=Escherichia coli, GI226510936, Length=194, Percent_Identity=38.659793814433, Blast_Score=134, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI71997299, Length=166, Percent_Identity=27.1084337349398, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997289, Length=166, Percent_Identity=27.1084337349398, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=183, Percent_Identity=31.6939890710383, Blast_Score=86, Evalue=7e-18,
Organism=Drosophila melanogaster, GI281376913, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571388, Length=187, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 32968; Mature: 32968

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRLFLGAAGASLLSACTVTGFSSSSGSKNAPALATAVVPPESQPAVPPVRIGLALGGG
CCCEEEEECCHHHHHHHHHEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCC
AARGFAHIGVIKALEAQGIQIDFITGTSAGSVVAALYASGMSGIELNRQALKMDEATIAD
CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCCEECHHHHHCCCCHHHH
WALPFGTRFGGWLKGEALEKYVNRLVKQKTIEQMRIPLGIVATDLGSGRPILFRRGNTGQ
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCC
AVRASCSIPGVFQPVTISGHQYVDGGLVAPVPVTYAKQMGATFVIAVNISADPSAQAVSG
EEEEECCCCCCCCEEEECCCEEECCCEECCCCHHHHHHCCCEEEEEEEECCCCCCHHHCC
QASMLLQTTTIMGQSINKTELAQADVVIAPSLPFVKGSDFTARNEAILGGEQAALAAMPL
CHHEEEEEHHHHCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCHHHHHHHHH
LREKLRLPQTAQATPLPPH
HHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MQRRLFLGAAGASLLSACTVTGFSSSSGSKNAPALATAVVPPESQPAVPPVRIGLALGGG
CCCEEEEECCHHHHHHHHHEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCC
AARGFAHIGVIKALEAQGIQIDFITGTSAGSVVAALYASGMSGIELNRQALKMDEATIAD
CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCCEECHHHHHCCCCHHHH
WALPFGTRFGGWLKGEALEKYVNRLVKQKTIEQMRIPLGIVATDLGSGRPILFRRGNTGQ
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCC
AVRASCSIPGVFQPVTISGHQYVDGGLVAPVPVTYAKQMGATFVIAVNISADPSAQAVSG
EEEEECCCCCCCCEEEECCCEEECCCEECCCCHHHHHHCCCEEEEEEEECCCCCCHHHCC
QASMLLQTTTIMGQSINKTELAQADVVIAPSLPFVKGSDFTARNEAILGGEQAALAAMPL
CHHEEEEEHHHHCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCHHHHHHHHH
LREKLRLPQTAQATPLPPH
HHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]