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The map label for this gene is ycfD [H]

Identifier: 17545867

GI number: 17545867

Start: 1204332

End: 1205561

Strand: Reverse

Name: ycfD [H]

Synonym: RSc1148

Alternate gene names: 17545867

Gene position: 1205561-1204332 (Counterclockwise)

Preceding gene: 17545869

Following gene: 17545858

Centisome position: 32.44

GC content: 67.24

Gene sequence:

>1230_bases
ATGAACGAACTCCCATTATACGCCGCCGCCCGCGGTGTCCAACCCGGCCTGGCGGCGGGGCGTCCGGCGCAGTTGCTGGG
CGGGCTGTCGCCGCGCGATTTCATGCGCACGCACTGGCAGAAGAAGCCCCTGCTGATCCGCCAGGCGCTATCGCCCGAAG
ACATGCGTGCACTGCACTTCCCATTGTCGCCCGACGCGCTGATCAAGCTGGCCAGGCGCGAGGATGTCGAGTCCCGCCTG
ATCGCCCAGACACGCGGGCGCTGGACCTTCAACCACGGCCCGTTCAACGAGCGGCCGCTGCCATCGCGCAAGGCCCGCAA
CTGGACGCTGCTGGTGCAGGGCGTGAACCTGGTCGAGCCCGCGGTCGATGCACTGATGCAGCGTTTCCGCTTCATCCCCG
ACGCGCGCCTGGACGACGTGATGATCAGCTTCGCCACCGACGGCGGCGGCGTCGGCCCGCATTTCGATTCGTACGACGTG
TTCCTGCTCCAGGCGCACGGCCGGCGACGCTGGCGGATCTCGTCGCAGAATGACCTCACGCTGGTGCCCGACCTGCCGCT
GAAGATCCTGGCCAACTTCACGCCCGAGGAAGAGTTCATCCTGGAACCCGGCGACATGCTCTACCTGCCGCCGCACTACG
CGCACGACGGCGTGGCCGAAGGCGATTGCATGACGTACTCGGTCGGTTTCCGCTCGCCGTCCTACCGCGAACTGGCCGGC
CACTTCCTCGGCTTCCTGTCGCAAACGCTCGAAGACAACCCGGACTTCGAAGGCCGCTACACCGACCCGGAGCAGAAGCC
CGTCGAGCGCCCCGGCGAACTGCCCACCGCCATGGTGCGTGCGCTGGCGCAGAAGCTCAACGCACTGCGTTGGACACCCG
AACTGGTCGGCGAATTCTTCGGCGCCTACCTGACCGAGCCCAAGGACCACGTGGAATTCGTCACGCAGCCGCGCCTGTCG
CTGGCCCGCTTCACGGCCCGCGCACGCAAGGAAGGGATCGTGCTCGACGCGCGCACGCAGGCGCTCTACGACGCGCAGCG
CTTCTGGATCAACGGCGACACATTCGAGCCTTCGGATACGCTGCTTGCGTGGCTGTCCGCGTTGTCGGACCAGCGCGGGG
CAAGCGCGGAAGCAGTGGATGCCGCAGCCGATCTGCCCGACCTGATGGATACCCTGCACGCTTGGTACGAGGAAGGCTGG
CTGCAACTCGCCGGGCCCGGCGCGCATTGA

Upstream 100 bases:

>100_bases
ATCGGCTCATCGGATTCCTCGATGACGTTGCCCTGCGCGTCGGACAGTTTGTAAGCCACCGACACCACGGTATTCTTCGC
GATTTTCAATTGCGCACTCC

Downstream 100 bases:

>100_bases
AACACATCGTTACAAAAGCGCGGGAATCGGGGCGGCAACGGGCAGACCTCTGCTACACAGGGTAGTTAAAGGCCGCTATA
ATCCGACGCTGGCTTGCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MNELPLYAAARGVQPGLAAGRPAQLLGGLSPRDFMRTHWQKKPLLIRQALSPEDMRALHFPLSPDALIKLARREDVESRL
IAQTRGRWTFNHGPFNERPLPSRKARNWTLLVQGVNLVEPAVDALMQRFRFIPDARLDDVMISFATDGGGVGPHFDSYDV
FLLQAHGRRRWRISSQNDLTLVPDLPLKILANFTPEEEFILEPGDMLYLPPHYAHDGVAEGDCMTYSVGFRSPSYRELAG
HFLGFLSQTLEDNPDFEGRYTDPEQKPVERPGELPTAMVRALAQKLNALRWTPELVGEFFGAYLTEPKDHVEFVTQPRLS
LARFTARARKEGIVLDARTQALYDAQRFWINGDTFEPSDTLLAWLSALSDQRGASAEAVDAAADLPDLMDTLHAWYEEGW
LQLAGPGAH

Sequences:

>Translated_409_residues
MNELPLYAAARGVQPGLAAGRPAQLLGGLSPRDFMRTHWQKKPLLIRQALSPEDMRALHFPLSPDALIKLARREDVESRL
IAQTRGRWTFNHGPFNERPLPSRKARNWTLLVQGVNLVEPAVDALMQRFRFIPDARLDDVMISFATDGGGVGPHFDSYDV
FLLQAHGRRRWRISSQNDLTLVPDLPLKILANFTPEEEFILEPGDMLYLPPHYAHDGVAEGDCMTYSVGFRSPSYRELAG
HFLGFLSQTLEDNPDFEGRYTDPEQKPVERPGELPTAMVRALAQKLNALRWTPELVGEFFGAYLTEPKDHVEFVTQPRLS
LARFTARARKEGIVLDARTQALYDAQRFWINGDTFEPSDTLLAWLSALSDQRGASAEAVDAAADLPDLMDTLHAWYEEGW
LQLAGPGAH
>Mature_409_residues
MNELPLYAAARGVQPGLAAGRPAQLLGGLSPRDFMRTHWQKKPLLIRQALSPEDMRALHFPLSPDALIKLARREDVESRL
IAQTRGRWTFNHGPFNERPLPSRKARNWTLLVQGVNLVEPAVDALMQRFRFIPDARLDDVMISFATDGGGVGPHFDSYDV
FLLQAHGRRRWRISSQNDLTLVPDLPLKILANFTPEEEFILEPGDMLYLPPHYAHDGVAEGDCMTYSVGFRSPSYRELAG
HFLGFLSQTLEDNPDFEGRYTDPEQKPVERPGELPTAMVRALAQKLNALRWTPELVGEFFGAYLTEPKDHVEFVTQPRLS
LARFTARARKEGIVLDARTQALYDAQRFWINGDTFEPSDTLLAWLSALSDQRGASAEAVDAAADLPDLMDTLHAWYEEGW
LQLAGPGAH

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=379, Percent_Identity=33.509234828496, Blast_Score=195, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 46007; Mature: 46007

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELPLYAAARGVQPGLAAGRPAQLLGGLSPRDFMRTHWQKKPLLIRQALSPEDMRALHF
CCCCCCHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHEEEC
PLSPDALIKLARREDVESRLIAQTRGRWTFNHGPFNERPLPSRKARNWTLLVQGVNLVEP
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHH
AVDALMQRFRFIPDARLDDVMISFATDGGGVGPHFDSYDVFLLQAHGRRRWRISSQNDLT
HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCEE
LVPDLPLKILANFTPEEEFILEPGDMLYLPPHYAHDGVAEGDCMTYSVGFRSPSYRELAG
EECCCCHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
HFLGFLSQTLEDNPDFEGRYTDPEQKPVERPGELPTAMVRALAQKLNALRWTPELVGEFF
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
GAYLTEPKDHVEFVTQPRLSLARFTARARKEGIVLDARTQALYDAQRFWINGDTFEPSDT
HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCEEEECHHHHHHHHHHEEECCCCCCCHHH
LLAWLSALSDQRGASAEAVDAAADLPDLMDTLHAWYEEGWLQLAGPGAH
HHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCC
>Mature Secondary Structure
MNELPLYAAARGVQPGLAAGRPAQLLGGLSPRDFMRTHWQKKPLLIRQALSPEDMRALHF
CCCCCCHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHEEEC
PLSPDALIKLARREDVESRLIAQTRGRWTFNHGPFNERPLPSRKARNWTLLVQGVNLVEP
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHH
AVDALMQRFRFIPDARLDDVMISFATDGGGVGPHFDSYDVFLLQAHGRRRWRISSQNDLT
HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCEE
LVPDLPLKILANFTPEEEFILEPGDMLYLPPHYAHDGVAEGDCMTYSVGFRSPSYRELAG
EECCCCHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
HFLGFLSQTLEDNPDFEGRYTDPEQKPVERPGELPTAMVRALAQKLNALRWTPELVGEFF
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
GAYLTEPKDHVEFVTQPRLSLARFTARARKEGIVLDARTQALYDAQRFWINGDTFEPSDT
HHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCEEEECHHHHHHHHHHEEECCCCCCCHHH
LLAWLSALSDQRGASAEAVDAAADLPDLMDTLHAWYEEGWLQLAGPGAH
HHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]