| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is 17545844
Identifier: 17545844
GI number: 17545844
Start: 1183656
End: 1184477
Strand: Direct
Name: 17545844
Synonym: RSc1125
Alternate gene names: NA
Gene position: 1183656-1184477 (Clockwise)
Preceding gene: 17545843
Following gene: 17545845
Centisome position: 31.85
GC content: 68.86
Gene sequence:
>822_bases ATGCGCGACGTGATGCTCTTTTCGCATGCCAACGGTTTTCCCGTCGGCACCTACCGGAAGATGCTGGACGTGCTGTCGGA GACCTTCGACATCCATGCGGTCGAGCGCTTCGGGCACGATCCGCGTTTCCCCGTGACGCGGTCCTGGCCGGGGCTGGTCA AGGAGCTGCTGGCCGAAATCGACGCGCAGCCCGAGCCGGTCTGGCTGGTCGGCCATTCGCTGGGCGGATTCCTGAGCCTG ATGGCGGCGCTGCGCCGGCCCGGGCGCGTGCGCGGCGTGCTGATGCTCGATTCCCCCGTCATCGCAGGCTGGCGGGCCAG GCTGCTGCGCATGGCGCAGTGGCTCGACATCGACGCGCGCCAATCCCCCGCGGCGGCCACCAAGAACCGTCGCAACCTGT GGCCGGACCTCGATTCGGTCTGGACCCACTTCAAGGCCAAGCGCAAGTTCGATCGCTGGGACGAAGACGTGCTGCGCGAC TACGTCGAGCACGGCACCGAGCCCACCGGCCGCGACGGCGAGCGCACGCTGCGCTTCTCGCGCGACATCGAATACCGGAT CTACCGCACGCTGCCGACCAACATGGGGCGCAAGGTCGCCGGCGGTGCGCCGTTCCTGGTCAGCTTCGTGGCCGGCACGC GCTCGCGCGAAATCCGCCAGGTCGGCCTGACGGCGACCCGCCGCCTGGTGGGCCGTCGCCTGCGCTGGATCGAGGGCAGC CACCTGTATCCGATGGAAAAACCGCTGGAAACGGCGGGGCTGATCCGCGAACTGATCGACGAAATGCGCGCAGAGGCAGG CGCCATGCGGCACGCCGCCTGA
Upstream 100 bases:
>100_bases GCGCGCGCCGGGGCCCGCGTTCGGGCAGGGCGCCGCGGCGCAGCGCGTGGCCGGCGGATCGCACGAACCACACTGAACCC GACGTCGGAGGCGCTGGCCG
Downstream 100 bases:
>100_bases ACGGGCGAATTCGGCGGCGCCGACACGGATCGGACAGGGCACCTTTGCTATAATCCGGCTTTCCCCGGCAAGCCAGGTTT ATGACCAAGTTCGTATTCGT
Product: hydrolase
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Hydrolase Fold Protein; Hydrolases Or Acyltransferases; Alpha/Beta Fold Family Hydrolase; Hydrolase/Acyltransferase; Alpha/Beta Superfamily Hydrolase/Acyltransferase; Hydrolase Protein; Alpha/Beta Hydrolase; Alpha/Beta Fold Superfamily Hydrolase; Hydrolase Alpha/Beta Family; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Fold Hydrolase; Alpha/Beta Family Hydrolase; Alpha/Beta Hydrolase Fold-Containing Protein; Conserved Hydrolases Or Acyltransferase
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MRDVMLFSHANGFPVGTYRKMLDVLSETFDIHAVERFGHDPRFPVTRSWPGLVKELLAEIDAQPEPVWLVGHSLGGFLSL MAALRRPGRVRGVLMLDSPVIAGWRARLLRMAQWLDIDARQSPAAATKNRRNLWPDLDSVWTHFKAKRKFDRWDEDVLRD YVEHGTEPTGRDGERTLRFSRDIEYRIYRTLPTNMGRKVAGGAPFLVSFVAGTRSREIRQVGLTATRRLVGRRLRWIEGS HLYPMEKPLETAGLIRELIDEMRAEAGAMRHAA
Sequences:
>Translated_273_residues MRDVMLFSHANGFPVGTYRKMLDVLSETFDIHAVERFGHDPRFPVTRSWPGLVKELLAEIDAQPEPVWLVGHSLGGFLSL MAALRRPGRVRGVLMLDSPVIAGWRARLLRMAQWLDIDARQSPAAATKNRRNLWPDLDSVWTHFKAKRKFDRWDEDVLRD YVEHGTEPTGRDGERTLRFSRDIEYRIYRTLPTNMGRKVAGGAPFLVSFVAGTRSREIRQVGLTATRRLVGRRLRWIEGS HLYPMEKPLETAGLIRELIDEMRAEAGAMRHAA >Mature_273_residues MRDVMLFSHANGFPVGTYRKMLDVLSETFDIHAVERFGHDPRFPVTRSWPGLVKELLAEIDAQPEPVWLVGHSLGGFLSL MAALRRPGRVRGVLMLDSPVIAGWRARLLRMAQWLDIDARQSPAAATKNRRNLWPDLDSVWTHFKAKRKFDRWDEDVLRD YVEHGTEPTGRDGERTLRFSRDIEYRIYRTLPTNMGRKVAGGAPFLVSFVAGTRSREIRQVGLTATRRLVGRRLRWIEGS HLYPMEKPLETAGLIRELIDEMRAEAGAMRHAA
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31296; Mature: 31296
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: PS00120 LIPASE_SER ; PS00226 IF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDVMLFSHANGFPVGTYRKMLDVLSETFDIHAVERFGHDPRFPVTRSWPGLVKELLAEI CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH DAQPEPVWLVGHSLGGFLSLMAALRRPGRVRGVLMLDSPVIAGWRARLLRMAQWLDIDAR CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCC QSPAAATKNRRNLWPDLDSVWTHFKAKRKFDRWDEDVLRDYVEHGTEPTGRDGERTLRFS CCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHC RDIEYRIYRTLPTNMGRKVAGGAPFLVSFVAGTRSREIRQVGLTATRRLVGRRLRWIEGS CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC HLYPMEKPLETAGLIRELIDEMRAEAGAMRHAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRDVMLFSHANGFPVGTYRKMLDVLSETFDIHAVERFGHDPRFPVTRSWPGLVKELLAEI CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH DAQPEPVWLVGHSLGGFLSLMAALRRPGRVRGVLMLDSPVIAGWRARLLRMAQWLDIDAR CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCC QSPAAATKNRRNLWPDLDSVWTHFKAKRKFDRWDEDVLRDYVEHGTEPTGRDGERTLRFS CCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHC RDIEYRIYRTLPTNMGRKVAGGAPFLVSFVAGTRSREIRQVGLTATRRLVGRRLRWIEGS CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC HLYPMEKPLETAGLIRELIDEMRAEAGAMRHAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA