| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is comA [H]
Identifier: 17545839
GI number: 17545839
Start: 1176593
End: 1179136
Strand: Direct
Name: comA [H]
Synonym: RSc1120
Alternate gene names: 17545839
Gene position: 1176593-1179136 (Clockwise)
Preceding gene: 17545838
Following gene: 17545840
Centisome position: 31.66
GC content: 73.0
Gene sequence:
>2544_bases ATGCGCGCCCTGCTGATCGGCTTCGTCGCAGGGTGCATGGCGCTGCAGACGCGGCCGGCGCTGGCGCCGGTGTGGCAGCC GGCGCTGCTTGGGCTTGCTTGCCTGCTGGCGATGGCGTTGCTGCGGCGCGGCGCTCGGTTGCCCAGGCTCGTTCCCGTGA TGGCAGTGCTGGCGGCGGCCTGCGCCGGCTTCGGCTGGAGCGATTGGCGCGCGCAGCAGCGCTTGTCCGTGGTGCTGGCG CCCGCATGGGAGGGCAAGGACATCCGCGCGACGGGCGTCGTGGCCGAGCTGCCCGAAGTCACCGAGGACGCCACGCGCTT CCTGTTCCGGATTGAATCCAGCGACGCGGGCGATGCCGTACCGCCGCGCGTGCGGCTGTCGTGGTACGGCCTGCGCAGCT GGCATGAGCGGCAGCGGGAGGCGGAGGCCGCCACCGATCGCCGCGCCGGCATTCCCGATCTGCAGCCCGGCCAGCGCTGG CAGCTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAATCCCGGCGGCTTCGATGGCGAATACGCGATGCTTGCCGA CGATGTCCGTGCCGCGGGCTACGTGTACACGGGCAAACGCGCGCGCAATGCGTTGATGGGCGAAGCCGATGCCGGTTCCG GTGTTGGGCTCCGTGTCGAGCGCTGGCGCGCCGCGGTGCGGCGGCATCTCCTGGCTGCGCTGCCCGAGGCACGCTACGCG CCGGTGATCGTCGCCCTGGTGGTGGGCGACCAGAGCGGCATCGCGCAGGCGGATTGGGAGCGCTTCCGCCGCACCGGCAT CAGCCATCTCGTCAGCATTTCCGGTCTGCACATCACGATGATCGCCGGGCTGTTCGGCGCGCTGTGGATGGCGCTGTGGC GGCGCTCGTTCGGCCTGGCCCGCTGGCTGCGCACACCGCTGCCGCTGCGCATGCCGGCCCAGCGTGCGGGCGCCGTCGCC GCCATGGCGGCGGCGTTTGCCTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCGCGAC CGTTGCCGTGGCGCGGCTGGCCGATCGCAGCGTGCCGGTCAGCCTGTCGCTGTGCTGGGCGGCGGCCTTGGTGGCGCTGG TGGATCCGTGGGCGGTCATGTCGGCGGGAGGCTGGCTGTCGTTCGGCGCCGTGGCGGTCATCTTCCTGGCCGCGCGGATC GTTGCCGCCGATGCGCGGGACGACGTCCGCCGGCCCGCCTGGCCGGTGCGCGCCTGGCGCGGCCTGCGCGGCGCCGCGCG CGTCCAGCTGGCCGTGACGTTCGGCCTGCTGCCGTTGACCTTGCTGCTGTTCCAGCAGGTCTCGGTGGTGTCGGCCGTGG CCAACGCGCTGGCGATCCCGGTGGTCAGCTTTGTCACGACGCCGCTGGCGCTGATGGGCACGGCGTTGCCCGAGCCATGG TCGCAGCCGGTGCTGATATGGGCCGAGGCCAGCTTCGCCTGGCTCATGCCGTGGCTGGATGCGCTGGCGCTGCCCGGCGG GTCGGTGTGGGTGGCGCCCGCCGCGCCGGCCTGGGCCTGGGGGCTGGCGGTGGTCGGTGTGCCGTTGCTGCTCGTGCCGG GTGGGTATCGCGCCTGGGCCTGGCGGGCGCAGGGCGCGGTGCTGCTGCTGCCGATGCTGCTGGCACGCGCACCGGCGCCG CCGCCGGGCGAGTTCCGCATGGTCGCATTCGACATCGGCCAGGGCGCCGCCACGCTGGTCGAGACGGCCGGCCACCGGCT GCTGTTCGATACCGGTCCCCGCCAAGGCGACCTGGCCGATGCCGCCGATCGCGTGATCGTCCCGTATCTGCGCGGACATG GGGTGCAGGCCATCGACACGCTGGTGGTCAGCCATGAGGATAGCGATCACGCCGGCGGCACCGAAACGGTGATGGCCGGT GTGCCGGTGCGCACCATGCTGGCGTCCCTGCCGCCCGGCCACGGGCTGGAGCGGCAGGCCCGCGCGCTCGGCATCGAGCC CGCAGGCTGCGTGGCCGGGCAGCGCTGGGCATGGGACGGCGTCGCCTTCGAAATCCTGTATCCGGTGCAGGTGCCCTCCG ATCGGGCGGCCGTGTCCAGCAATGCCCGCAGCTGTGTGCTGCGCATCGCCAACGCGCGCTACGCCGCCATGCTGGCCGGC GACATCGGCCGCGCCCAGGAAGCGGCGCTGATTGCCGCCGAAGCGCCGGAGCGGCTCATGGCAGATATCTTGCTTGTGCC CCATCACGGCAGCAGGACGAGCTCCAGCGGCGCGTTCCTGGACGCGGTCTCTGCGCAGGTGGCGGTGTTCCAGGTCGGCT ACCGCAACCGGTACGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGGCATCGAGCGGCTGCGCACCGAT GCCACCGGGGCCGTCGTCATCGAGACGCGCGGCGATGCGCTGGCGGTGCGGACGGCGCGGTCGATGCGGCCGCGCTACTG GTCCTCGGCGCTGGAGGTGGCCGCCCTGGCAGAGACCACGGAGCCCACGGGCGCGCAGCCGTAA
Upstream 100 bases:
>100_bases GCGCGGCATTGCCGTCGACACGCTGGCTGCGCAGGCCCGGCGCAACAGTGTCGAGGCCATTCCCCGTCTGGCGGCGCTGC TCGAATCCTGACCCGCACCG
Downstream 100 bases:
>100_bases GACAGGGGGGCTGCGGCGGGTTTGCCCAAGTTGTGGACAGCAAAACCGCTGTGCTATAAAAACCACATGCCGCGCGCTGC GCGGTGGCGTCATCAGGGGG
Product: transporter DNA uptake transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 847; Mature: 847
Protein sequence:
>847_residues MRALLIGFVAGCMALQTRPALAPVWQPALLGLACLLAMALLRRGARLPRLVPVMAVLAAACAGFGWSDWRAQQRLSVVLA PAWEGKDIRATGVVAELPEVTEDATRFLFRIESSDAGDAVPPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRW QLTLRLKRPHSLMNPGGFDGEYAMLADDVRAAGYVYTGKRARNALMGEADAGSGVGLRVERWRAAVRRHLLAALPEARYA PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLARWLRTPLPLRMPAQRAGAVA AMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPVSLSLCWAAALVALVDPWAVMSAGGWLSFGAVAVIFLAARI VAADARDDVRRPAWPVRAWRGLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGTALPEPW SQPVLIWAEASFAWLMPWLDALALPGGSVWVAPAAPAWAWGLAVVGVPLLLVPGGYRAWAWRAQGAVLLLPMLLARAPAP PPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAG VPVRTMLASLPPGHGLERQARALGIEPAGCVAGQRWAWDGVAFEILYPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG DIGRAQEAALIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSAQVAVFQVGYRNRYGHPHPQVWQRYGARGIERLRTD ATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETTEPTGAQP
Sequences:
>Translated_847_residues MRALLIGFVAGCMALQTRPALAPVWQPALLGLACLLAMALLRRGARLPRLVPVMAVLAAACAGFGWSDWRAQQRLSVVLA PAWEGKDIRATGVVAELPEVTEDATRFLFRIESSDAGDAVPPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRW QLTLRLKRPHSLMNPGGFDGEYAMLADDVRAAGYVYTGKRARNALMGEADAGSGVGLRVERWRAAVRRHLLAALPEARYA PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLARWLRTPLPLRMPAQRAGAVA AMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPVSLSLCWAAALVALVDPWAVMSAGGWLSFGAVAVIFLAARI VAADARDDVRRPAWPVRAWRGLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGTALPEPW SQPVLIWAEASFAWLMPWLDALALPGGSVWVAPAAPAWAWGLAVVGVPLLLVPGGYRAWAWRAQGAVLLLPMLLARAPAP PPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAG VPVRTMLASLPPGHGLERQARALGIEPAGCVAGQRWAWDGVAFEILYPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG DIGRAQEAALIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSAQVAVFQVGYRNRYGHPHPQVWQRYGARGIERLRTD ATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETTEPTGAQP >Mature_847_residues MRALLIGFVAGCMALQTRPALAPVWQPALLGLACLLAMALLRRGARLPRLVPVMAVLAAACAGFGWSDWRAQQRLSVVLA PAWEGKDIRATGVVAELPEVTEDATRFLFRIESSDAGDAVPPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRW QLTLRLKRPHSLMNPGGFDGEYAMLADDVRAAGYVYTGKRARNALMGEADAGSGVGLRVERWRAAVRRHLLAALPEARYA PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLARWLRTPLPLRMPAQRAGAVA AMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPVSLSLCWAAALVALVDPWAVMSAGGWLSFGAVAVIFLAARI VAADARDDVRRPAWPVRAWRGLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGTALPEPW SQPVLIWAEASFAWLMPWLDALALPGGSVWVAPAAPAWAWGLAVVGVPLLLVPGGYRAWAWRAQGAVLLLPMLLARAPAP PPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAG VPVRTMLASLPPGHGLERQARALGIEPAGCVAGQRWAWDGVAFEILYPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG DIGRAQEAALIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSAQVAVFQVGYRNRYGHPHPQVWQRYGARGIERLRTD ATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETTEPTGAQP
Specific function: Essential for natural transformation. Could be a transporter involved in DNA uptake [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, H.influenzae REC2, and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=689, Percent_Identity=28.4470246734398, Blast_Score=211, Evalue=2e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 90737; Mature: 90737
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALLIGFVAGCMALQTRPALAPVWQPALLGLACLLAMALLRRGARLPRLVPVMAVLAAA CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH CAGFGWSDWRAQQRLSVVLAPAWEGKDIRATGVVAELPEVTEDATRFLFRIESSDAGDAV HHCCCCHHHHHHCCEEEEEEECCCCCCEEECCHHHHCHHHHHHHHHHEEEEECCCCCCCC PPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRWQLTLRLKRPHSLMNPGGFDG CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC EYAMLADDVRAAGYVYTGKRARNALMGEADAGSGVGLRVERWRAAVRRHLLAALPEARYA CHHHHHHHHHHCCEEEECHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCC PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLA CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH RWLRTPLPLRMPAQRAGAVAAMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPV HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCE SLSLCWAAALVALVDPWAVMSAGGWLSFGAVAVIFLAARIVAADARDDVRRPAWPVRAWR EHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHH GLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGTALPEPW CCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SQPVLIWAEASFAWLMPWLDALALPGGSVWVAPAAPAWAWGLAVVGVPLLLVPGGYRAWA CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEECCCCCEEE WRAQGAVLLLPMLLARAPAPPPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLAD EECCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHH AADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAGVPVRTMLASLPPGHGLERQA HHCCEEEHHHCCCCCHHHHHEEEECCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCHHHH RALGIEPAGCVAGQRWAWDGVAFEILYPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG HHCCCCCHHHCCCCCEEECCEEEEEEEEEECCCCHHHHHCCHHHHHHHHHCCCEEHHHHC DIGRAQEAALIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSAQVAVFQVGYRNRYGH CCCCCHHHEEEECCCHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHEEEEEECHHCCCCC PHPQVWQRYGARGIERLRTDATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETT CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEHHHHHCCCHHHHHHHHHHHHHHCC EPTGAQP CCCCCCC >Mature Secondary Structure MRALLIGFVAGCMALQTRPALAPVWQPALLGLACLLAMALLRRGARLPRLVPVMAVLAAA CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH CAGFGWSDWRAQQRLSVVLAPAWEGKDIRATGVVAELPEVTEDATRFLFRIESSDAGDAV HHCCCCHHHHHHCCEEEEEEECCCCCCEEECCHHHHCHHHHHHHHHHEEEEECCCCCCCC PPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRWQLTLRLKRPHSLMNPGGFDG CCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC EYAMLADDVRAAGYVYTGKRARNALMGEADAGSGVGLRVERWRAAVRRHLLAALPEARYA CHHHHHHHHHHCCEEEECHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCC PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLA CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH RWLRTPLPLRMPAQRAGAVAAMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPV HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCE SLSLCWAAALVALVDPWAVMSAGGWLSFGAVAVIFLAARIVAADARDDVRRPAWPVRAWR EHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHH GLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGTALPEPW CCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SQPVLIWAEASFAWLMPWLDALALPGGSVWVAPAAPAWAWGLAVVGVPLLLVPGGYRAWA CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEECCCCCEEE WRAQGAVLLLPMLLARAPAPPPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLAD EECCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCHHH AADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAGVPVRTMLASLPPGHGLERQA HHCCEEEHHHCCCCCHHHHHEEEECCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCHHHH RALGIEPAGCVAGQRWAWDGVAFEILYPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG HHCCCCCHHHCCCCCEEECCEEEEEEEEEECCCCHHHHHCCHHHHHHHHHCCCEEHHHHC DIGRAQEAALIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSAQVAVFQVGYRNRYGH CCCCCHHHEEEECCCHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHEEEEEECHHCCCCC PHPQVWQRYGARGIERLRTDATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETT CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEHHHHHCCCHHHHHHHHHHHHHHCC EPTGAQP CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934834; 8830266 [H]