Click here to switch to the map view.

The map label for this gene is yjjV [H]

Identifier: 17545838

GI number: 17545838

Start: 1175768

End: 1176583

Strand: Direct

Name: yjjV [H]

Synonym: RSc1119

Alternate gene names: 17545838

Gene position: 1175768-1176583 (Clockwise)

Preceding gene: 17545837

Following gene: 17545839

Centisome position: 31.64

GC content: 70.47

Gene sequence:

>816_bases
ATGTGGATCGACACCCACTGCCACCTCGATGCCCGCGAATTCGATGCCGACCGCGATGCGGTGATCGAGCAGGCGCGGGT
AGCGGGGGTCCGCCACATCGTGGTGCCGGCGATCGCGCGCTGGAACTTCGATGTGGTGCGCGCGCTGGCGCACCGGCAGG
CCGGCTGCTGCTACGCGCTCGGCATCCACCCGCTCTGCGCCGCGCAAGCCAGCGATGACGACCTGATCGAACTGCGCCGG
CAGGTCGCCGCGTCGATGGACGACCCGCGCTTCGTCGCCATCGGCGAGATCGGGCTCGACTTCTTCATCCCCGATCCGCA
GGTCGAGCGGCAGAACGCCGTCTACCAGGCGCAACTGAAGATCGCGCGCGAGTTCGACCTGCCGGTGCTGCTGCATGTGC
GCAAGTCGCAGGATCAGGTGCGCAGCGCGGCGGCCAGGGCGGGCGTGCGGCGCGGCATCGCGCATGCCTTCAACGGCAGC
GACGACCAGGCCCGCCACTACATCGAGACCGGTTTCAAGCTGGGCTTCGGCGGCGTGCTCACCTTCTCGCGCGCCCATCG
CATCCGGCGGCTGGCCGCGGAGATGCCGCTCGAATCGATCGTGCTGGAAACCGACGCGCCCGATCTCGCCCCGGCCTGGC
TGGCCGACGACCAGTTCAGCGAGCAGGTCGGCACGCGCAACGCACCGGCCGAGGTGGCCGGAATCGCCGCCGCGCTGGCG
GCGCTGCGCGGCATTGCCGTCGACACGCTGGCTGCGCAGGCCCGGCGCAACAGTGTCGAGGCCATTCCCCGTCTGGCGGC
GCTGCTCGAATCCTGA

Upstream 100 bases:

>100_bases
GATATCGACCTGGCCGGACGCTGCGATCGCATCCTGCGGCTGCGCGACGGGCATCTGCACCAGGAACGGTAAGCAACGCA
CCCGCCCGCCGCGCACCGCC

Downstream 100 bases:

>100_bases
CCCGCACCGATGCGCGCCCTGCTGATCGGCTTCGTCGCAGGGTGCATGGCGCTGCAGACGCGGCCGGCGCTGGCGCCGGT
GTGGCAGCCGGCGCTGCTTG

Product: deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MWIDTHCHLDAREFDADRDAVIEQARVAGVRHIVVPAIARWNFDVVRALAHRQAGCCYALGIHPLCAAQASDDDLIELRR
QVAASMDDPRFVAIGEIGLDFFIPDPQVERQNAVYQAQLKIAREFDLPVLLHVRKSQDQVRSAAARAGVRRGIAHAFNGS
DDQARHYIETGFKLGFGGVLTFSRAHRIRRLAAEMPLESIVLETDAPDLAPAWLADDQFSEQVGTRNAPAEVAGIAAALA
ALRGIAVDTLAAQARRNSVEAIPRLAALLES

Sequences:

>Translated_271_residues
MWIDTHCHLDAREFDADRDAVIEQARVAGVRHIVVPAIARWNFDVVRALAHRQAGCCYALGIHPLCAAQASDDDLIELRR
QVAASMDDPRFVAIGEIGLDFFIPDPQVERQNAVYQAQLKIAREFDLPVLLHVRKSQDQVRSAAARAGVRRGIAHAFNGS
DDQARHYIETGFKLGFGGVLTFSRAHRIRRLAAEMPLESIVLETDAPDLAPAWLADDQFSEQVGTRNAPAEVAGIAAALA
ALRGIAVDTLAAQARRNSVEAIPRLAALLES
>Mature_271_residues
MWIDTHCHLDAREFDADRDAVIEQARVAGVRHIVVPAIARWNFDVVRALAHRQAGCCYALGIHPLCAAQASDDDLIELRR
QVAASMDDPRFVAIGEIGLDFFIPDPQVERQNAVYQAQLKIAREFDLPVLLHVRKSQDQVRSAAARAGVRRGIAHAFNGS
DDQARHYIETGFKLGFGGVLTFSRAHRIRRLAAEMPLESIVLETDAPDLAPAWLADDQFSEQVGTRNAPAEVAGIAAALA
ALRGIAVDTLAAQARRNSVEAIPRLAALLES

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=282, Percent_Identity=30.1418439716312, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI226061853, Length=290, Percent_Identity=30, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI110349734, Length=282, Percent_Identity=29.7872340425532, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI226061614, Length=270, Percent_Identity=29.6296296296296, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI226061595, Length=231, Percent_Identity=31.1688311688312, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI225903424, Length=235, Percent_Identity=26.3829787234043, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=39.5348837209302, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1787342, Length=262, Percent_Identity=29.3893129770992, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=29.1187739463602, Blast_Score=96, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=267, Percent_Identity=26.9662921348315, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=23.7735849056604, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24586117, Length=286, Percent_Identity=24.1258741258741, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221330018, Length=286, Percent_Identity=24.1258741258741, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648690, Length=280, Percent_Identity=23.9285714285714, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29637; Mature: 29637

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDAREFDADRDAVIEQARVAGVRHIVVPAIARWNFDVVRALAHRQAGCCYAL
CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEE
GIHPLCAAQASDDDLIELRRQVAASMDDPRFVAIGEIGLDFFIPDPQVERQNAVYQAQLK
CCCHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHH
IAREFDLPVLLHVRKSQDQVRSAAARAGVRRGIAHAFNGSDDQARHYIETGFKLGFGGVL
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHH
TFSRAHRIRRLAAEMPLESIVLETDAPDLAPAWLADDQFSEQVGTRNAPAEVAGIAAALA
HHHHHHHHHHHHHHCCHHHEEEECCCCCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHH
ALRGIAVDTLAAQARRNSVEAIPRLAALLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWIDTHCHLDAREFDADRDAVIEQARVAGVRHIVVPAIARWNFDVVRALAHRQAGCCYAL
CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEE
GIHPLCAAQASDDDLIELRRQVAASMDDPRFVAIGEIGLDFFIPDPQVERQNAVYQAQLK
CCCHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHH
IAREFDLPVLLHVRKSQDQVRSAAARAGVRRGIAHAFNGSDDQARHYIETGFKLGFGGVL
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHH
TFSRAHRIRRLAAEMPLESIVLETDAPDLAPAWLADDQFSEQVGTRNAPAEVAGIAAALA
HHHHHHHHHHHHHHCCHHHEEEECCCCCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHH
ALRGIAVDTLAAQARRNSVEAIPRLAALLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]