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The map label for this gene is rbsC [H]

Identifier: 17545734

GI number: 17545734

Start: 1068311

End: 1069357

Strand: Reverse

Name: rbsC [H]

Synonym: RSc1015

Alternate gene names: 17545734

Gene position: 1069357-1068311 (Counterclockwise)

Preceding gene: 17545735

Following gene: 17545733

Centisome position: 28.77

GC content: 70.58

Gene sequence:

>1047_bases
ATGCGTTCTGATTCCGCCCTGCCCCCCGCCGGCTCGCCCGGCCCGTCCGAGCCCCCGGAGGCGGCAGCCGGGGCCGCCAC
GCGCGCCGGCCGCGGCGCGCTGGGCATGTCGCTCGGGGCCATCGGCGGCCTGCTGGCGGCGCTGGCCGCGATGCTGGTCC
TGTTCAGCCTGCTGTCGGACACCTTCTTCACGGTGTCGACCTTCACCACCATCGCCAACGAGATCCCCGACCTGCTCGTG
ATGGCGGTGGGCATGACCTTCGTGCTGATGATCGGCGGCATCGACCTGTCGGTGGGCTCGGTGCTGGCGCTGTCGGCGTC
GATGCTGTCCATCGCCATGACCCGGTTCGGCTGGGGCCTGGCGCCGGCGGCCCTGCTGGGCGTGCTGGCGGCCACCGCGG
CCGGCGCCCTGACCGGCACGGTGACGGTGCGCTGGGGCATTCCGTCGTTCATCGTCTCGCTGGGCGTGCTGGAAATGGCG
CGCGGCCTGGCCTACAGCCTGACCGATTCGCGCACCGTCTACCTCGGTGCCGCGGTGGACTGGCTGGCCACCCCGATCGC
GCTGGGCATCGCGCCGTCGTTCCTGATCGCGATCGCCATCACCGTGATCGGCCAGGTCGTGCTGGTGCGCACCGTGTTCG
GCCGCTACCTGGTCGCCATCGGCACCAACGAGGAGGCGGTGCGGCTGGCGGGCGTCAATCCGCATCCGTACAAGATCGCC
GTGTTTGCGCTGATGGGATGGCTGTCGGGGCTGGCGGCGCTGTTCCAGGTGTCGCGGCTGGAAGCGGCCGACCCCAACGC
GGGGGGCGGCATGGAGCTGCAGGTGATCGCCGCCGTGGTGATCGGCGGCACCAGCCTCATGGGCGGACGCGGGTCGGTGG
CCCGCACGCTGTTCGGCGTCCTCATCATTTCTGTGCTCGAAGCCGGCCTCGCGCAGATCGGCGCTTCGGAGCCGACCAAA
CGGATCATCACGGGCGCGGTCATCGTCGCGGCCGTGGTCATGGATACCTATCGAACCCGGACCAACCGGGTCACTACACG
CCAATAA

Upstream 100 bases:

>100_bases
CAGATCTTCCGCCGCGACAGCTGGAGCCGGGATGCCCTGCTTGCCGCCGCCTTCGGCGAATGTCCCCCGCCGTCCTCCAC
GTCCGCCCCGGAGACCGCCG

Downstream 100 bases:

>100_bases
AGACACAGGGAGCTTCAACATGGCCACTATCAAGGACGTTGCCGCATTAGCCGGGGTGTCATTCACCACCGTCTCGCATG
TCATCAACAACACACGGCCG

Product: transmembrane ABC transporter protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRSDSALPPAGSPGPSEPPEAAAGAATRAGRGALGMSLGAIGGLLAALAAMLVLFSLLSDTFFTVSTFTTIANEIPDLLV
MAVGMTFVLMIGGIDLSVGSVLALSASMLSIAMTRFGWGLAPAALLGVLAATAAGALTGTVTVRWGIPSFIVSLGVLEMA
RGLAYSLTDSRTVYLGAAVDWLATPIALGIAPSFLIAIAITVIGQVVLVRTVFGRYLVAIGTNEEAVRLAGVNPHPYKIA
VFALMGWLSGLAALFQVSRLEAADPNAGGGMELQVIAAVVIGGTSLMGGRGSVARTLFGVLIISVLEAGLAQIGASEPTK
RIITGAVIVAAVVMDTYRTRTNRVTTRQ

Sequences:

>Translated_348_residues
MRSDSALPPAGSPGPSEPPEAAAGAATRAGRGALGMSLGAIGGLLAALAAMLVLFSLLSDTFFTVSTFTTIANEIPDLLV
MAVGMTFVLMIGGIDLSVGSVLALSASMLSIAMTRFGWGLAPAALLGVLAATAAGALTGTVTVRWGIPSFIVSLGVLEMA
RGLAYSLTDSRTVYLGAAVDWLATPIALGIAPSFLIAIAITVIGQVVLVRTVFGRYLVAIGTNEEAVRLAGVNPHPYKIA
VFALMGWLSGLAALFQVSRLEAADPNAGGGMELQVIAAVVIGGTSLMGGRGSVARTLFGVLIISVLEAGLAQIGASEPTK
RIITGAVIVAAVVMDTYRTRTNRVTTRQ
>Mature_348_residues
MRSDSALPPAGSPGPSEPPEAAAGAATRAGRGALGMSLGAIGGLLAALAAMLVLFSLLSDTFFTVSTFTTIANEIPDLLV
MAVGMTFVLMIGGIDLSVGSVLALSASMLSIAMTRFGWGLAPAALLGVLAATAAGALTGTVTVRWGIPSFIVSLGVLEMA
RGLAYSLTDSRTVYLGAAVDWLATPIALGIAPSFLIAIAITVIGQVVLVRTVFGRYLVAIGTNEEAVRLAGVNPHPYKIA
VFALMGWLSGLAALFQVSRLEAADPNAGGGMELQVIAAVVIGGTSLMGGRGSVARTLFGVLIISVLEAGLAQIGASEPTK
RIITGAVIVAAVVMDTYRTRTNRVTTRQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=36.5131578947368, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1788896, Length=307, Percent_Identity=32.2475570032573, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI145693152, Length=313, Percent_Identity=31.9488817891374, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=30.7692307692308, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=44.5255474452555, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082395, Length=245, Percent_Identity=35.5102040816327, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=243, Percent_Identity=32.5102880658436, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787793, Length=297, Percent_Identity=28.2828282828283, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35368; Mature: 35368

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSDSALPPAGSPGPSEPPEAAAGAATRAGRGALGMSLGAIGGLLAALAAMLVLFSLLSD
CCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFFTVSTFTTIANEIPDLLVMAVGMTFVLMIGGIDLSVGSVLALSASMLSIAMTRFGWGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCH
APAALLGVLAATAAGALTGTVTVRWGIPSFIVSLGVLEMARGLAYSLTDSRTVYLGAAVD
HHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCEEEEEHHHH
WLATPIALGIAPSFLIAIAITVIGQVVLVRTVFGRYLVAIGTNEEAVRLAGVNPHPYKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCHHHH
VFALMGWLSGLAALFQVSRLEAADPNAGGGMELQVIAAVVIGGTSLMGGRGSVARTLFGV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LIISVLEAGLAQIGASEPTKRIITGAVIVAAVVMDTYRTRTNRVTTRQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSDSALPPAGSPGPSEPPEAAAGAATRAGRGALGMSLGAIGGLLAALAAMLVLFSLLSD
CCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFFTVSTFTTIANEIPDLLVMAVGMTFVLMIGGIDLSVGSVLALSASMLSIAMTRFGWGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCH
APAALLGVLAATAAGALTGTVTVRWGIPSFIVSLGVLEMARGLAYSLTDSRTVYLGAAVD
HHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCEEEEEHHHH
WLATPIALGIAPSFLIAIAITVIGQVVLVRTVFGRYLVAIGTNEEAVRLAGVNPHPYKIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCHHHH
VFALMGWLSGLAALFQVSRLEAADPNAGGGMELQVIAAVVIGGTSLMGGRGSVARTLFGV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LIISVLEAGLAQIGASEPTKRIITGAVIVAAVVMDTYRTRTNRVTTRQ
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]