| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is fatA [H]
Identifier: 17545519
GI number: 17545519
Start: 846627
End: 848744
Strand: Direct
Name: fatA [H]
Synonym: RSc0800
Alternate gene names: 17545519
Gene position: 846627-848744 (Clockwise)
Preceding gene: 17545518
Following gene: 17545520
Centisome position: 22.78
GC content: 69.97
Gene sequence:
>2118_bases TTGCTCGCGATGACCAGCCGTCTCGCGGCACGCGCGCTGTCGTGCGCGCTCGCCGCCATTCCTCTTGCCGTGTCGACCCT GGCGCGCGCCGATGCCGCCTCCGGCACGGATGCCGCCGCCACCGTCGATCTCGACGCAACCACCGTCACCGCGCGCAGCC AGCGCGGGTTCGCCGCCAGCACGGCCGAGGTCGGCTCGTTCCGCGGGCAGTCGCTGCGCGACATCCCGGCCACCGTCAAC GTCGTCACGCGCGAGGCGCTCGACGCGCAGCAGGACCGCACGCTGTACGACGCGCTGCGCAACACCGCGGGCGTGACGCG ACAGCAGCTCTCGGGCGAGACTTTCGACAACCTCGCCATCCGCGGCGTGACGCTGGAGAACCGCACCAACTTCCGCCTCA ACGGCTCGATGCCGGTCTTCAACCTGATGGCGATCCCGCTGGAGGACAAGGAGCGCGTGGAGGTGCTCAAGGGCGTGTCG GCGCTCTACTACGGCTACACCACGCCGGGCGGCATGGTGAACCTCGTCACCAAGCGCGCGGGCAACACGCCGGTCACCTC GGTCGGCATGTCGGTCGACAGCAACGGCACCGCCATCGCCAACGTCGACGTGGCCCGCCGCTTCGGCGAAGACAACCAGT ACGGCCTGCGCTTCAATGCCGCGGGCGGCCGGCTGGGATCGGCCACCAGCGGCATCGACGGCGATCGCCAGATGGCGAGC CTGGCCTTCGACTGGAAGGTCAACAGCCGCCTGAGCCTGAAGGCCGATGTGGAGTACGCGCGCCAGGTCATCACCGAGCA GTCGGTGGTGACGCTGCCGGCCGCGAAGAACGGCGTCATCTCGCTGCCCGCCATGCCGGACCCGACCAAGCGCCTGTCGC CGGACTGGGCCAAGTTCCGCGCCAACAGCACCACCGCGATGCTGCGCGCCGATTACGCGCTCAACGACGACTGGCTGGTG ACGGTCGAGGGCGGCACCTCGGAGCTGGCGCGCACGCGGGCCTTCACGGAAATCGGCAGCGTCAACGCGGTGACCGGCAA GGGCACGATCTCGGGCAACCGCCAGGACGGCCGCTGGACCACCGGCCACCTGCGCGCCGACCTCAACGGCACCCAGATGA CCGGCTCGGTCAAGCACGAGCTGACCTTCGGCGTGGCGCGCTCGGAGATGCGCCAGGCCGCGGTGTATTCCAGCCGCTTC TCCGGCACGCAGAACCTGTACAACCCGGTCGACCTCGGCTGGCTGCCGACCACCGGCACCAGCGTCACCGCCGCGCAGCG CGCCGTCGACACCGGCGTCTACGCGCTGGACCGCATGACCCTGACGCAGCACTGGCAGGTCATCGCCGGCCTGCGCTACA CCAGCTACACCAGCGTGCAGGCGCCCAACCGCTACGAGGCCAGCAAGACCACGCCGCTCGGCGCGCTGATCTACAAGTTC ACCCCGACCCTGTCGGCCTATGCCTCGTACGCGCAGGGCCTGGAGGCGGGCGACCGCGCGCCCAACACCGCCGCCAACGC CAACGTGGCGATGCCGCCCGCGGTCAGCAAGCAGAAGGAAGTGGGCGTGCGCTATGAAACGCCGGCCGGCACCCAGCTGT CGGCGGCGCTGTATGAGATCGACCGGGCCGCCAGCTATACCAACGCTTCCAACGTCTACGTGCAGGACGGCCGCCAGCGC ATCCGCGGCCTGGAACTGAATGCGCAGGGACGCGTCACGAACGACCTGTCGCTGCTGGCCTCGGCCGGCTGGATCGACGC CAAGTTCCGCGGCGTCGGCAACGGCCTCGACGGCAAGACGCCGGAGAACACGCCGCGCGCCACCGCCAGCCTGTTCGCCG AATACACCCTGCCGATGCTGCGCTCGGTGTCGTTCAACGCCGGCGCCTATTACGTCGGCCCGCGCCCGGTCAACGACGCC GACCAGGCGTGGCTGGGCGGCACCACGCTGTTCGGCGCCGGCGCGCGCTATGTCACGCGCGTCGCCGGCAAGCGCACCAC CTGGCAGCTCAACGTCGACAACCTGACCGACAAGCGCTACTGGGCGGGTGCCGGCAACAACCGGCTGTCGATGGGCGCGC CGCGCGTGTTCAAGCTGTCGATGAAGATCGATCTCTGA
Upstream 100 bases:
>100_bases GCCAGTTGACCGACGCGCTGCATGCCGACCGCATCGGCGCGTTTTCCATTCCCCAGCATCGTTCTGGGCGCGTCCGGTTT TCGCCAATCCTGATGGACCC
Downstream 100 bases:
>100_bases TGCCGTTCACTTCCGGAGCCAAACCGATGAAACCGTTCCTTCGCCTGTGCGCGGTCGCGCTGATGGCATGCGCCTGCCTG CGGCCCGCCGCCGCCGCCGA
Product: ferrisiderophore receptor signal peptide protein
Products: NA
Alternate protein names: OM2 [H]
Number of amino acids: Translated: 705; Mature: 705
Protein sequence:
>705_residues MLAMTSRLAARALSCALAAIPLAVSTLARADAASGTDAAATVDLDATTVTARSQRGFAASTAEVGSFRGQSLRDIPATVN VVTREALDAQQDRTLYDALRNTAGVTRQQLSGETFDNLAIRGVTLENRTNFRLNGSMPVFNLMAIPLEDKERVEVLKGVS ALYYGYTTPGGMVNLVTKRAGNTPVTSVGMSVDSNGTAIANVDVARRFGEDNQYGLRFNAAGGRLGSATSGIDGDRQMAS LAFDWKVNSRLSLKADVEYARQVITEQSVVTLPAAKNGVISLPAMPDPTKRLSPDWAKFRANSTTAMLRADYALNDDWLV TVEGGTSELARTRAFTEIGSVNAVTGKGTISGNRQDGRWTTGHLRADLNGTQMTGSVKHELTFGVARSEMRQAAVYSSRF SGTQNLYNPVDLGWLPTTGTSVTAAQRAVDTGVYALDRMTLTQHWQVIAGLRYTSYTSVQAPNRYEASKTTPLGALIYKF TPTLSAYASYAQGLEAGDRAPNTAANANVAMPPAVSKQKEVGVRYETPAGTQLSAALYEIDRAASYTNASNVYVQDGRQR IRGLELNAQGRVTNDLSLLASAGWIDAKFRGVGNGLDGKTPENTPRATASLFAEYTLPMLRSVSFNAGAYYVGPRPVNDA DQAWLGGTTLFGAGARYVTRVAGKRTTWQLNVDNLTDKRYWAGAGNNRLSMGAPRVFKLSMKIDL
Sequences:
>Translated_705_residues MLAMTSRLAARALSCALAAIPLAVSTLARADAASGTDAAATVDLDATTVTARSQRGFAASTAEVGSFRGQSLRDIPATVN VVTREALDAQQDRTLYDALRNTAGVTRQQLSGETFDNLAIRGVTLENRTNFRLNGSMPVFNLMAIPLEDKERVEVLKGVS ALYYGYTTPGGMVNLVTKRAGNTPVTSVGMSVDSNGTAIANVDVARRFGEDNQYGLRFNAAGGRLGSATSGIDGDRQMAS LAFDWKVNSRLSLKADVEYARQVITEQSVVTLPAAKNGVISLPAMPDPTKRLSPDWAKFRANSTTAMLRADYALNDDWLV TVEGGTSELARTRAFTEIGSVNAVTGKGTISGNRQDGRWTTGHLRADLNGTQMTGSVKHELTFGVARSEMRQAAVYSSRF SGTQNLYNPVDLGWLPTTGTSVTAAQRAVDTGVYALDRMTLTQHWQVIAGLRYTSYTSVQAPNRYEASKTTPLGALIYKF TPTLSAYASYAQGLEAGDRAPNTAANANVAMPPAVSKQKEVGVRYETPAGTQLSAALYEIDRAASYTNASNVYVQDGRQR IRGLELNAQGRVTNDLSLLASAGWIDAKFRGVGNGLDGKTPENTPRATASLFAEYTLPMLRSVSFNAGAYYVGPRPVNDA DQAWLGGTTLFGAGARYVTRVAGKRTTWQLNVDNLTDKRYWAGAGNNRLSMGAPRVFKLSMKIDL >Mature_705_residues MLAMTSRLAARALSCALAAIPLAVSTLARADAASGTDAAATVDLDATTVTARSQRGFAASTAEVGSFRGQSLRDIPATVN VVTREALDAQQDRTLYDALRNTAGVTRQQLSGETFDNLAIRGVTLENRTNFRLNGSMPVFNLMAIPLEDKERVEVLKGVS ALYYGYTTPGGMVNLVTKRAGNTPVTSVGMSVDSNGTAIANVDVARRFGEDNQYGLRFNAAGGRLGSATSGIDGDRQMAS LAFDWKVNSRLSLKADVEYARQVITEQSVVTLPAAKNGVISLPAMPDPTKRLSPDWAKFRANSTTAMLRADYALNDDWLV TVEGGTSELARTRAFTEIGSVNAVTGKGTISGNRQDGRWTTGHLRADLNGTQMTGSVKHELTFGVARSEMRQAAVYSSRF SGTQNLYNPVDLGWLPTTGTSVTAAQRAVDTGVYALDRMTLTQHWQVIAGLRYTSYTSVQAPNRYEASKTTPLGALIYKF TPTLSAYASYAQGLEAGDRAPNTAANANVAMPPAVSKQKEVGVRYETPAGTQLSAALYEIDRAASYTNASNVYVQDGRQR IRGLELNAQGRVTNDLSLLASAGWIDAKFRGVGNGLDGKTPENTPRATASLFAEYTLPMLRSVSFNAGAYYVGPRPVNDA DQAWLGGTTLFGAGARYVTRVAGKRTTWQLNVDNLTDKRYWAGAGNNRLSMGAPRVFKLSMKIDL
Specific function: Anguibactin receptor, essential component of the iron uptake system of V.anguillarum [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=746, Percent_Identity=23.7265415549598, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1787344, Length=745, Percent_Identity=22.6845637583893, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1787024, Length=774, Percent_Identity=22.9974160206718, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1788478, Length=642, Percent_Identity=22.1183800623053, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 75550; Mature: 75550
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAMTSRLAARALSCALAAIPLAVSTLARADAASGTDAAATVDLDATTVTARSQRGFAAS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCCC TAEVGSFRGQSLRDIPATVNVVTREALDAQQDRTLYDALRNTAGVTRQQLSGETFDNLAI HHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEE RGVTLENRTNFRLNGSMPVFNLMAIPLEDKERVEVLKGVSALYYGYTTPGGMVNLVTKRA EEEEECCCCCEEECCCCCEEEEEEECCCCHHHHHHHHCCHHEEEEECCCCCEEEEEECCC GNTPVTSVGMSVDSNGTAIANVDVARRFGEDNQYGLRFNAAGGRLGSATSGIDGDRQMAS CCCCCEEECEEECCCCCEEEEEHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEE LAFDWKVNSRLSLKADVEYARQVITEQSVVTLPAAKNGVISLPAMPDPTKRLSPDWAKFR EEEEEEECCEEEEEECHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCHHHCCCCHHHHC ANSTTAMLRADYALNDDWLVTVEGGTSELARTRAFTEIGSVNAVTGKGTISGNRQDGRWT CCCCEEEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCEE TGHLRADLNGTQMTGSVKHELTFGVARSEMRQAAVYSSRFSGTQNLYNPVDLGWLPTTGT EEEEEECCCCCEECCCCHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC SVTAAQRAVDTGVYALDRMTLTQHWQVIAGLRYTSYTSVQAPNRYEASKTTPLGALIYKF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCEEEEEEC TPTLSAYASYAQGLEAGDRAPNTAANANVAMPPAVSKQKEVGVRYETPAGTQLSAALYEI CCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHCCEEEECCCCCHHHHHHHHH DRAASYTNASNVYVQDGRQRIRGLELNAQGRVTNDLSLLASAGWIDAKFRGVGNGLDGKT HHHHCCCCCCCEEEECCHHHHCCEEECCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCC PENTPRATASLFAEYTLPMLRSVSFNAGAYYVGPRPVNDADQAWLGGTTLFGAGARYVTR CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHCCCCEEECCCHHHHHH VAGKRTTWQLNVDNLTDKRYWAGAGNNRLSMGAPRVFKLSMKIDL HCCCCEEEEEECCCCCCCCEEECCCCCEEECCCCEEEEEEEEECC >Mature Secondary Structure MLAMTSRLAARALSCALAAIPLAVSTLARADAASGTDAAATVDLDATTVTARSQRGFAAS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCCCCC TAEVGSFRGQSLRDIPATVNVVTREALDAQQDRTLYDALRNTAGVTRQQLSGETFDNLAI HHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEE RGVTLENRTNFRLNGSMPVFNLMAIPLEDKERVEVLKGVSALYYGYTTPGGMVNLVTKRA EEEEECCCCCEEECCCCCEEEEEEECCCCHHHHHHHHCCHHEEEEECCCCCEEEEEECCC GNTPVTSVGMSVDSNGTAIANVDVARRFGEDNQYGLRFNAAGGRLGSATSGIDGDRQMAS CCCCCEEECEEECCCCCEEEEEHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEE LAFDWKVNSRLSLKADVEYARQVITEQSVVTLPAAKNGVISLPAMPDPTKRLSPDWAKFR EEEEEEECCEEEEEECHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCHHHCCCCHHHHC ANSTTAMLRADYALNDDWLVTVEGGTSELARTRAFTEIGSVNAVTGKGTISGNRQDGRWT CCCCEEEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCEECCCCCCCCEE TGHLRADLNGTQMTGSVKHELTFGVARSEMRQAAVYSSRFSGTQNLYNPVDLGWLPTTGT EEEEEECCCCCEECCCCHHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC SVTAAQRAVDTGVYALDRMTLTQHWQVIAGLRYTSYTSVQAPNRYEASKTTPLGALIYKF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCEEEEEEC TPTLSAYASYAQGLEAGDRAPNTAANANVAMPPAVSKQKEVGVRYETPAGTQLSAALYEI CCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHCCEEEECCCCCHHHHHHHHH DRAASYTNASNVYVQDGRQRIRGLELNAQGRVTNDLSLLASAGWIDAKFRGVGNGLDGKT HHHHCCCCCCCEEEECCHHHHCCEEECCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCC PENTPRATASLFAEYTLPMLRSVSFNAGAYYVGPRPVNDADQAWLGGTTLFGAGARYVTR CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHCCCCEEECCCHHHHHH VAGKRTTWQLNVDNLTDKRYWAGAGNNRLSMGAPRVFKLSMKIDL HCCCCEEEEEECCCCCCCCEEECCCCCEEECCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2830268; 13129954; 2311935 [H]