| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is ygcG [H]
Identifier: 17545382
GI number: 17545382
Start: 708131
End: 708970
Strand: Reverse
Name: ygcG [H]
Synonym: RSc0663
Alternate gene names: 17545382
Gene position: 708970-708131 (Counterclockwise)
Preceding gene: 17545383
Following gene: 17545381
Centisome position: 19.08
GC content: 73.45
Gene sequence:
>840_bases ATGTCGCTCCGCATGCGCGCCCTGCTGACAAGCCTCGTGACGATGGCGCTGTGGCTGGCCGCCTGGCCCGCGCATGCGCA GGCCGACCTGGCCGCGATACCGCCGCTGGCCGCCCGCGTGACCGACCTGACCGGCACGCTGACGGCGCAGCAGCGCGGCG CGCTCGAGCAGGTGCTGGCCGACTACGAGCAGCAGCGCGGCAGCCAGATCTTCGTGCTGATGGTGGCTTCCACCGCGCCC GAGCCGATCGAGGCCTACGGCATCCGCGTGGCGGAGGCCTGGAAGGCCGGCCGCAAGGGCGTGGACGACGGTGCCATCGT GCTGATCGCCAAGGACAACCCGGCCTCGCTGCGCAAGATGCGCATCGAGGTCGGGCGCGGGCTGGAAGGCTCGCTGACGG ATGCGCAATCCAAGCGCATCCTGCAGGATGTGATGGCGCCGCACTTCCGCCAGGGCGATTTCTACGGCGGGCTGTCGGCG GGCATCTCGGCCATCCAGACCGTCATTGCGCAGGAGAACCTGCCGCCCGCCGAACGCGGCCGGGCCCGGCGCACCGACTC CGGCATCGGCACCTGGCTGCCGGTGCTGTTTCCGCTGGCCATCATCGTGTTCTTTGTGCTGAGCGCGGCGATGCGCTCGG GCGGCCGCGTCGCGGGCAGCCTGCCGGGCCGGCCCGGCTCGCGGGTGATGATGGGCAACCGCGGCTGGGGGCCGGGCGCC ATCGGCGGGCTCGGTGGCGGGCTCGGCGGCGGCTGGGGACGCGGCGGCGATGGCGGCGGCGGCTTCGGTGGAGGCGGCGG TGGCGATTTCGGCGGCGGCGGCGCCTCCGGCAACTGGTAA
Upstream 100 bases:
>100_bases GGCCAAGGCGATGGGCTACGAGGTCAAACCCAGCTTCACGGTAGAGAACGAGAAGGGCATCTCGACCGCGCCGGCAGTAA AGTTCTGAGCGCCTGAAGCC
Downstream 100 bases:
>100_bases CCGGCGAGCGCAACCATGACCTCTACCCGACACCATCGCGGCGCCCGCCGCGCCCTGCGCCACCTGACGACGACCACCGC GCACGCGCGCCGTGCCTTCT
Product: glycine rich transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSLRMRALLTSLVTMALWLAAWPAHAQADLAAIPPLAARVTDLTGTLTAQQRGALEQVLADYEQQRGSQIFVLMVASTAP EPIEAYGIRVAEAWKAGRKGVDDGAIVLIAKDNPASLRKMRIEVGRGLEGSLTDAQSKRILQDVMAPHFRQGDFYGGLSA GISAIQTVIAQENLPPAERGRARRTDSGIGTWLPVLFPLAIIVFFVLSAAMRSGGRVAGSLPGRPGSRVMMGNRGWGPGA IGGLGGGLGGGWGRGGDGGGGFGGGGGGDFGGGGASGNW
Sequences:
>Translated_279_residues MSLRMRALLTSLVTMALWLAAWPAHAQADLAAIPPLAARVTDLTGTLTAQQRGALEQVLADYEQQRGSQIFVLMVASTAP EPIEAYGIRVAEAWKAGRKGVDDGAIVLIAKDNPASLRKMRIEVGRGLEGSLTDAQSKRILQDVMAPHFRQGDFYGGLSA GISAIQTVIAQENLPPAERGRARRTDSGIGTWLPVLFPLAIIVFFVLSAAMRSGGRVAGSLPGRPGSRVMMGNRGWGPGA IGGLGGGLGGGWGRGGDGGGGFGGGGGGDFGGGGASGNW >Mature_278_residues SLRMRALLTSLVTMALWLAAWPAHAQADLAAIPPLAARVTDLTGTLTAQQRGALEQVLADYEQQRGSQIFVLMVASTAPE PIEAYGIRVAEAWKAGRKGVDDGAIVLIAKDNPASLRKMRIEVGRGLEGSLTDAQSKRILQDVMAPHFRQGDFYGGLSAG ISAIQTVIAQENLPPAERGRARRTDSGIGTWLPVLFPLAIIVFFVLSAAMRSGGRVAGSLPGRPGSRVMMGNRGWGPGAI GGLGGGLGGGWGRGGDGGGGFGGGGGGDFGGGGASGNW
Specific function: Unknown
COG id: COG1512
COG function: function code R; Beta-propeller domains of methanol dehydrogenase type
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0603 family [H]
Homologues:
Organism=Escherichia coli, GI87082161, Length=200, Percent_Identity=28.5, Blast_Score=91, Evalue=9e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007621 [H]
Pfam domain/function: PF04536 DUF477 [H]
EC number: NA
Molecular weight: Translated: 28700; Mature: 28569
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRMRALLTSLVTMALWLAAWPAHAQADLAAIPPLAARVTDLTGTLTAQQRGALEQVLA CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH DYEQQRGSQIFVLMVASTAPEPIEAYGIRVAEAWKAGRKGVDDGAIVLIAKDNPASLRKM HHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH RIEVGRGLEGSLTDAQSKRILQDVMAPHFRQGDFYGGLSAGISAIQTVIAQENLPPAERG HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHC RARRTDSGIGTWLPVLFPLAIIVFFVLSAAMRSGGRVAGSLPGRPGSRVMMGNRGWGPGA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEECCCCCCCCC IGGLGGGLGGGWGRGGDGGGGFGGGGGGDFGGGGASGNW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SLRMRALLTSLVTMALWLAAWPAHAQADLAAIPPLAARVTDLTGTLTAQQRGALEQVLA CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH DYEQQRGSQIFVLMVASTAPEPIEAYGIRVAEAWKAGRKGVDDGAIVLIAKDNPASLRKM HHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH RIEVGRGLEGSLTDAQSKRILQDVMAPHFRQGDFYGGLSAGISAIQTVIAQENLPPAERG HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHC RARRTDSGIGTWLPVLFPLAIIVFFVLSAAMRSGGRVAGSLPGRPGSRVMMGNRGWGPGA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEECCCCCCCCC IGGLGGGLGGGWGRGGDGGGGFGGGGGGDFGGGGASGNW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]