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The map label for this gene is cpaC [C]

Identifier: 17545374

GI number: 17545374

Start: 701858

End: 703762

Strand: Reverse

Name: cpaC [C]

Synonym: RSc0655

Alternate gene names: 17545374

Gene position: 703762-701858 (Counterclockwise)

Preceding gene: 17545375

Following gene: 17545373

Centisome position: 18.94

GC content: 70.71

Gene sequence:

>1905_bases
ATGGACCGATTCACTGACCATTGCGGCAAGCAGCGCCGCGTCGGACCGCACCTGAGAGCAACCGCGCTGGCCGCCGCCGC
GCTCAGCGGCCTGTGGCTGGGCACGGCGCACGCGCAGGCCGGCGTGGAAAGCGCCATCGTCACCAGCAACATGGCCGCGC
CTACCAAGCCGCTGCGCATGGCCGCCAATGGCCCGATCCAGCTCACCATCGGCAGCGCCCGCGCCGATACCGCACGCGAA
AACACAGTCAAGGGGCCGAACTGCACCGGGCCGATGCGCGACCACAGCGAGGTGACGGTGCCGGTCGGCAAGTCGACCAT
GGTGCAGCTGACCGAGCCCGTGCGCAGCCGCACAGTGGGCAACCCCAACATCGTGCAGGCGATGCTGGTGTCGCCGCAGA
CGCTCTACCTGCTGGGCCAGGACGTGGGCACCACCAACATGATCGTGCAGGGCCGCAGCGGCTCGTGCAGCGTGATCGAC
GTGTCGGTGGGCGCTGACCCCGGCGGCCTGCAGGCGACCCTGCATGCGCTGATGCCCGAGGCCAGCCGCGTGCGCGTATC
GGCCGCGGCGGACAGCCTCGTGCTGGGCGGCACGGTGAGCGATTCGGTCCAGGCCCAGAAGATCATAGACATCGCCAACG
CCTTCGTCATGCGCGAGACCCGCGGGCCCGCGCAGAGCGGGCAGACCGGCACGATGGGCATGCAGGGCATGACCGCCATG
TCGACCGGCAACGCCGCCACCGCCAGCTCCGGCTCCGGCGAGGCGGTGCGCAACCCCCGCATCATCAACATGATGTCGGT
AGAGGCTCCGCAGCAGGTGATGCTGGAAGTGAAGGTGGCGGAAGTCTCCAAGACGCTGATCAACCAGATGGGCGCCGCGC
TCAACCTGAACGGCAGCTTCGGCAGCTGGACCTTCGGCGCGCTGGCCAACTTCCTGTCCGGCGCCCCCGACATCTTCTCC
GCCGACAAGGCCAACAAGCTGCCCTTCCAGCTCCGGGTCGATGCGCAGAAGGGCGACGGCCTGGTCAAGGTGCTGGCCGA
GCCCAACCTGATGGCGATCAGCGGGCAGGAAGCCAGCTTCCTGGCGGGCGGCAAGGTCTACATCCCGGTGCCGCAGAGCT
TCGGCACGGGCACCACGACCATCCTGCTGCAGGAAGAGACGTTCGGCGTCGGGCTGCGCTTCACGCCGACGGTGCTGGAA
AACGGCCGCATCAACCTCAAGGTCGCGCCGGAGGTCTCCGAGCTCTCGCCGACCGGCGTGGCGGTGACCGCGCCCAACGT
GTCGGGCACGTCGATCCTGCCGCTCATCACGACCCGCCGCGCCTCGACCACGCTGCAGGTCCACGACGGCCAGAGCTTCG
CCATCGGCGGCCTCATCAAGAGCAACGTCACGGGCAGCCTCAAGGCGATCCCGGGCGTGGGCGAACTGCCCGTCATCGGC
GCGCTGGCCCGCAGCACCAGCTTCCAGCAGGACCAGACCGAACTGCTGTTCGTGGTGACGCCGCACCTGGTCAAGCCGCT
GCCGGCGAACTACCCGATGCCGACCGACAGCTTCGGCCCGGTCAACCAGGGCGAGGTCTATCTCAACGGCAACATGGAAG
GCCATCCCGCCTCGCGCCCGGCACCGGCGCCCACACAAGGCAGCTTCGTGCCCGAGCCGGCCACGCCGCCCGCCGCGGCG
CCGGTCGTGAAGACCGTGGTGACCGTCCCGGCTGCGGCCGCGGGACCGGCCTCCGCGGCCTCCGCCATCGCGGCACCGGC
CAAGCCCGCCTCCGATCCCGCGCCGGCCCCGGCCGCGCCCAAGGCGCCGAGCGCCGGCATCGCGCCCAAGGACACCGCCA
TTGCCGCCGCGCCCGCCCCCCGCCGCCTGGTCCGCGTGGCGGACGACTCGCACGCCGGCAACTGA

Upstream 100 bases:

>100_bases
ACAACCAGGAATGCTTCTGAACAACGGGCTCGGAAAAAGACACTGAAGCTGAAGCCGTCACAAGTCCTGCCATGCAGGGA
TAACCGTCTGGGGGAACATC

Downstream 100 bases:

>100_bases
CCGACCGCACACCGGACGCTCAAGGAGCACATCATGAAGATCACCTCGACACTGGCACGCGCGGGACTCTGCAGCGCGCT
CGCCGCCCTCCTCGCCGGCT

Product: outer membrane channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 634; Mature: 634

Protein sequence:

>634_residues
MDRFTDHCGKQRRVGPHLRATALAAAALSGLWLGTAHAQAGVESAIVTSNMAAPTKPLRMAANGPIQLTIGSARADTARE
NTVKGPNCTGPMRDHSEVTVPVGKSTMVQLTEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSCSVID
VSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAFVMRETRGPAQSGQTGTMGMQGMTAM
STGNAATASSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNLNGSFGSWTFGALANFLSGAPDIFS
ADKANKLPFQLRVDAQKGDGLVKVLAEPNLMAISGQEASFLAGGKVYIPVPQSFGTGTTTILLQEETFGVGLRFTPTVLE
NGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNVTGSLKAIPGVGELPVIG
ALARSTSFQQDQTELLFVVTPHLVKPLPANYPMPTDSFGPVNQGEVYLNGNMEGHPASRPAPAPTQGSFVPEPATPPAAA
PVVKTVVTVPAAAAGPASAASAIAAPAKPASDPAPAPAAPKAPSAGIAPKDTAIAAAPAPRRLVRVADDSHAGN

Sequences:

>Translated_634_residues
MDRFTDHCGKQRRVGPHLRATALAAAALSGLWLGTAHAQAGVESAIVTSNMAAPTKPLRMAANGPIQLTIGSARADTARE
NTVKGPNCTGPMRDHSEVTVPVGKSTMVQLTEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSCSVID
VSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAFVMRETRGPAQSGQTGTMGMQGMTAM
STGNAATASSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNLNGSFGSWTFGALANFLSGAPDIFS
ADKANKLPFQLRVDAQKGDGLVKVLAEPNLMAISGQEASFLAGGKVYIPVPQSFGTGTTTILLQEETFGVGLRFTPTVLE
NGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNVTGSLKAIPGVGELPVIG
ALARSTSFQQDQTELLFVVTPHLVKPLPANYPMPTDSFGPVNQGEVYLNGNMEGHPASRPAPAPTQGSFVPEPATPPAAA
PVVKTVVTVPAAAAGPASAASAIAAPAKPASDPAPAPAAPKAPSAGIAPKDTAIAAAPAPRRLVRVADDSHAGN
>Mature_634_residues
MDRFTDHCGKQRRVGPHLRATALAAAALSGLWLGTAHAQAGVESAIVTSNMAAPTKPLRMAANGPIQLTIGSARADTARE
NTVKGPNCTGPMRDHSEVTVPVGKSTMVQLTEPVRSRTVGNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSCSVID
VSVGADPGGLQATLHALMPEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAFVMRETRGPAQSGQTGTMGMQGMTAM
STGNAATASSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNLNGSFGSWTFGALANFLSGAPDIFS
ADKANKLPFQLRVDAQKGDGLVKVLAEPNLMAISGQEASFLAGGKVYIPVPQSFGTGTTTILLQEETFGVGLRFTPTVLE
NGRINLKVAPEVSELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNVTGSLKAIPGVGELPVIG
ALARSTSFQQDQTELLFVVTPHLVKPLPANYPMPTDSFGPVNQGEVYLNGNMEGHPASRPAPAPTQGSFVPEPATPPAAA
PVVKTVVTVPAAAAGPASAASAIAAPAKPASDPAPAPAAPKAPSAGIAPKDTAIAAAPAPRRLVRVADDSHAGN

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=188, Percent_Identity=29.7872340425532, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 64797; Mature: 64797

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFTDHCGKQRRVGPHLRATALAAAALSGLWLGTAHAQAGVESAIVTSNMAAPTKPLRM
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEECHHHHCCCHHHEEECCCCCCCCCEEE
AANGPIQLTIGSARADTARENTVKGPNCTGPMRDHSEVTVPVGKSTMVQLTEPVRSRTVG
ECCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHCCC
NPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSCSVIDVSVGADPGGLQATLHALMPE
CCHHEEEEECCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHCCC
ASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAFVMRETRGPAQSGQTGTMGMQGMTAM
CCEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEEE
STGNAATASSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNLNGSF
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCCEEEECCCC
GSWTFGALANFLSGAPDIFSADKANKLPFQLRVDAQKGDGLVKVLAEPNLMAISGQEASF
CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCEE
LAGGKVYIPVPQSFGTGTTTILLQEETFGVGLRFTPTVLENGRINLKVAPEVSELSPTGV
EECCEEEEECCCCCCCCEEEEEEEECCCCCCEEECCHHHCCCEEEEEECCCHHHCCCCCE
AVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNVTGSLKAIPGVGELPVIG
EEECCCCCCCEEEEEEEECCCCEEEEEECCCEEEECCEEECCCCCCEEECCCCCCCCHHH
ALARSTSFQQDQTELLFVVTPHLVKPLPANYPMPTDSFGPVNQGEVYLNGNMEGHPASRP
HHHHCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
APAPTQGSFVPEPATPPAAAPVVKTVVTVPAAAAGPASAASAIAAPAKPASDPAPAPAAP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
KAPSAGIAPKDTAIAAAPAPRRLVRVADDSHAGN
CCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MDRFTDHCGKQRRVGPHLRATALAAAALSGLWLGTAHAQAGVESAIVTSNMAAPTKPLRM
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHEEECHHHHCCCHHHEEECCCCCCCCCEEE
AANGPIQLTIGSARADTARENTVKGPNCTGPMRDHSEVTVPVGKSTMVQLTEPVRSRTVG
ECCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHCCC
NPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSCSVIDVSVGADPGGLQATLHALMPE
CCHHEEEEECCCEEEEEEECCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHCCC
ASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAFVMRETRGPAQSGQTGTMGMQGMTAM
CCEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEEE
STGNAATASSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNLNGSF
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCCEEEECCCC
GSWTFGALANFLSGAPDIFSADKANKLPFQLRVDAQKGDGLVKVLAEPNLMAISGQEASF
CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCEE
LAGGKVYIPVPQSFGTGTTTILLQEETFGVGLRFTPTVLENGRINLKVAPEVSELSPTGV
EECCEEEEECCCCCCCCEEEEEEEECCCCCCEEECCHHHCCCEEEEEECCCHHHCCCCCE
AVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNVTGSLKAIPGVGELPVIG
EEECCCCCCCEEEEEEEECCCCEEEEEECCCEEEECCEEECCCCCCEEECCCCCCCCHHH
ALARSTSFQQDQTELLFVVTPHLVKPLPANYPMPTDSFGPVNQGEVYLNGNMEGHPASRP
HHHHCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
APAPTQGSFVPEPATPPAAAPVVKTVVTVPAAAAGPASAASAIAAPAKPASDPAPAPAAP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
KAPSAGIAPKDTAIAAAPAPRRLVRVADDSHAGN
CCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]