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The map label for this gene is ycaN [H]

Identifier: 17545353

GI number: 17545353

Start: 681073

End: 682029

Strand: Direct

Name: ycaN [H]

Synonym: RSc0634

Alternate gene names: 17545353

Gene position: 681073-682029 (Clockwise)

Preceding gene: 17545349

Following gene: 17545355

Centisome position: 18.33

GC content: 60.92

Gene sequence:

>957_bases
ATGGATTCATCGCACCGGGTACGCGCAATCCTTTCCTTCGTCCAAGCCGCGACTACGGGCAGCTTTGCAGCAGCCGGGCG
CGTGCTCGGCATATCGTCTGCTGCGGTAAGCAAGAACGTCGCCGGTCTCGAAAAGGCGCTGAAGGTTCGTCTGATGAACC
GGACGACGCGGACGCTCCAGCTCACTGAAGAGGGGGCCGTATTCCTTCGGCAAGCGCGGCTAGCCCTCGAAGCGCTCGAT
GTCGCGGTCGACGCTGTCGCAGCGAAGCGTGACGAACCCACTGGGCGCGTTCGCATATCAACCAGTGCGGCTTTCGGGCA
GCAGCAACTCATGCCCATGCTGCCCGGCCTCCTCGCGCGCTATCCCGGCTTATCCGTGCTGGTCGATTTCGATGATCGGA
TTGTCGATTTGGTTCGCGATGGCTACGACCTTGCGCTACGAGGGGGCCACATGCGGGATTCCGCCTTGGTATCCCGCCCG
GTTTGCCGGCTCAATAAGATCCTCGTTGCATCCCCCGGCTATCTTGCCCATCACGCGGTGCCACGCATGATCGAGGATCT
ACCGCAACACAAACTGGTTGCCCGGCGCTTTCTTGGGGGCGCGGTGGATGCCTGGAGCTTCCAAGCGCAAGACGGCAGTA
TCACGACGCTTGATCCGTCGGATACAGCGGTCCTCACGCTGTCCGCGCCGGAAGCTGTTGTTGAAGCCGCAGTCGATGGC
ATCGGTATTGCGCAGGTGGGGGTGCATCTCGCTTGGGACCATTTGGTATCCGGCAAGTTGAAGGTAGTCCTTCGCCGTCA
GCTTCACCCTGGGACATACGAGATGGCGATCCAGTATCCCCACCGTGCCCTGATTGCGCCACGTGTTCGTGTGGTTGTGG
ACTACTTGCTGGAAGCGTTTGCTACGAACCGCGCTCTGCATGTGCCGCTGGACTCGCTAGACGAATTCTTGGCCTGA

Upstream 100 bases:

>100_bases
GATTGACCGGAAGTCAGGAATGGGTTGTTTTGGTCTAAACCTGAGGTTGATACTGAGCTGAGTGCTCGCGTGCTACCTTG
CTCGATGATCGGGAGACCGC

Downstream 100 bases:

>100_bases
GGCTTGCTCGAACGGCCTCCAATATGGAGATCGCAGCGACGCTCCACATCAGCGTGGAAACAGTAAAGACGCACGTCCGG
CAAATTCTCATGCGAATGGG

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MDSSHRVRAILSFVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQLTEEGAVFLRQARLALEALD
VAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLARYPGLSVLVDFDDRIVDLVRDGYDLALRGGHMRDSALVSRP
VCRLNKILVASPGYLAHHAVPRMIEDLPQHKLVARRFLGGAVDAWSFQAQDGSITTLDPSDTAVLTLSAPEAVVEAAVDG
IGIAQVGVHLAWDHLVSGKLKVVLRRQLHPGTYEMAIQYPHRALIAPRVRVVVDYLLEAFATNRALHVPLDSLDEFLA

Sequences:

>Translated_318_residues
MDSSHRVRAILSFVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQLTEEGAVFLRQARLALEALD
VAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLARYPGLSVLVDFDDRIVDLVRDGYDLALRGGHMRDSALVSRP
VCRLNKILVASPGYLAHHAVPRMIEDLPQHKLVARRFLGGAVDAWSFQAQDGSITTLDPSDTAVLTLSAPEAVVEAAVDG
IGIAQVGVHLAWDHLVSGKLKVVLRRQLHPGTYEMAIQYPHRALIAPRVRVVVDYLLEAFATNRALHVPLDSLDEFLA
>Mature_318_residues
MDSSHRVRAILSFVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQLTEEGAVFLRQARLALEALD
VAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLARYPGLSVLVDFDDRIVDLVRDGYDLALRGGHMRDSALVSRP
VCRLNKILVASPGYLAHHAVPRMIEDLPQHKLVARRFLGGAVDAWSFQAQDGSITTLDPSDTAVLTLSAPEAVVEAAVDG
IGIAQVGVHLAWDHLVSGKLKVVLRRQLHPGTYEMAIQYPHRALIAPRVRVVVDYLLEAFATNRALHVPLDSLDEFLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=301, Percent_Identity=30.5647840531561, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=30.2721088435374, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87081978, Length=307, Percent_Identity=32.5732899022801, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=29.1946308724832, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=26.7796610169492, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=28.3737024221453, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787589, Length=278, Percent_Identity=25.5395683453237, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786448, Length=249, Percent_Identity=27.3092369477912, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788706, Length=259, Percent_Identity=27.7992277992278, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=26.4591439688716, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI157672245, Length=142, Percent_Identity=31.6901408450704, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34383; Mature: 34383

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSHRVRAILSFVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQ
CCCCHHHHHHHHHHHHHCCCCHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
LTEEGAVFLRQARLALEALDVAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLAR
ECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHH
YPGLSVLVDFDDRIVDLVRDGYDLALRGGHMRDSALVSRPVCRLNKILVASPGYLAHHAV
CCCCEEEECCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHH
PRMIEDLPQHKLVARRFLGGAVDAWSFQAQDGSITTLDPSDTAVLTLSAPEAVVEAAVDG
HHHHHHCCHHHHHHHHHHCCCCCCCEEECCCCCEEEECCCCCEEEEECCHHHHHHHHHCC
IGIAQVGVHLAWDHLVSGKLKVVLRRQLHPGTYEMAIQYPHRALIAPRVRVVVDYLLEAF
CCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
ATNRALHVPLDSLDEFLA
HCCCEEECCHHHHHHHHC
>Mature Secondary Structure
MDSSHRVRAILSFVQAATTGSFAAAGRVLGISSAAVSKNVAGLEKALKVRLMNRTTRTLQ
CCCCHHHHHHHHHHHHHCCCCHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
LTEEGAVFLRQARLALEALDVAVDAVAAKRDEPTGRVRISTSAAFGQQQLMPMLPGLLAR
ECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHH
YPGLSVLVDFDDRIVDLVRDGYDLALRGGHMRDSALVSRPVCRLNKILVASPGYLAHHAV
CCCCEEEECCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHH
PRMIEDLPQHKLVARRFLGGAVDAWSFQAQDGSITTLDPSDTAVLTLSAPEAVVEAAVDG
HHHHHHCCHHHHHHHHHHCCCCCCCEEECCCCCEEEECCCCCEEEEECCHHHHHHHHHCC
IGIAQVGVHLAWDHLVSGKLKVVLRRQLHPGTYEMAIQYPHRALIAPRVRVVVDYLLEAF
CCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
ATNRALHVPLDSLDEFLA
HCCCEEECCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]