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The map label for this gene is avrA

Identifier: 17545327

GI number: 17545327

Start: 655891

End: 656583

Strand: Direct

Name: avrA

Synonym: RSc0608

Alternate gene names: NA

Gene position: 655891-656583 (Clockwise)

Preceding gene: 17545325

Following gene: 17545328

Centisome position: 17.65

GC content: 63.92

Gene sequence:

>693_bases
ATGAGAAGAATCGGCAACTTTTTCAGAACGCGATCGCACGCGTCCGGATCATCCCGCGGCCGGACGCATGAGCGGGAAGA
AGGTTCCTCCGGGCGAGCGGCCCGTTCTCCGAGTCCGGCGCTGTCGGACTTGCCCAGCTCACCTCGCAGCCGGCATGTCA
GTACGGTCGCCTCGCCGACGCGGTTCGATGACGACGGGAGGGTGACATATCCGGGGCATATCCAGTACCAGACTTCGGAG
TCCGAACGCGAGCGCTACCCCGACCTCGCTGAGGCGGTCGGTCATTCGCGGTATACCGGCCCCGGTTCGCCAAGGCCAGA
GCGTTTCCCGATCAGCGGTTACTTTCCCGATGGCCAGTACTTCAGCGTGACAGGCCTCCGGGGGCCAGCCATCCGCTCGG
GCGACGACGCGGTGATCGACCGCCAGCACGCCAGCCACGTGATCGACCATGGCGAAATGTCCGACGCGCAGGCCGGCCGG
TTCATGGATTGGCAGAACCGGTCGATCTATCCCACCTACGAGACAAGCGGCTGGGAATACAGCAACTGCGTGCATGGTCA
CGCTGAGGTGGGCCGGAGTGTTTTCGGGTGGGATGTTTATCCCGACCAGCACGCCCGGCCGCAGGATCTGGCCGATCAGA
TGGGGAACCTGAGGGTCCGCAACTACAACAGCGATAGCGATAGCGACGGCTAG

Upstream 100 bases:

>100_bases
ATGGTGTTCGCCAACGCAGCCAGTTTTTCGCTGCGCTGCAGCATAAAATTCCACTTTTGCCGATACTGCGGATCTCCTAT
TTGAAACTCAGGAGATTGAG

Downstream 100 bases:

>100_bases
TCGTGAATCGGCCGGCGCTCATTGGTATGGCCTCATTGCATCGGGTCATGCGGGGCGCCGCGTCAGCAAGTCCAGCCCCC
GTTTCGCCGGTCTTTCCGGT

Product: type III effector protein AvrA

Products: NA

Alternate protein names: Type III Effector Avirulence Gene AvrA; Avra-Related Protein; Type III Effector Avra Protein

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MRRIGNFFRTRSHASGSSRGRTHEREEGSSGRAARSPSPALSDLPSSPRSRHVSTVASPTRFDDDGRVTYPGHIQYQTSE
SERERYPDLAEAVGHSRYTGPGSPRPERFPISGYFPDGQYFSVTGLRGPAIRSGDDAVIDRQHASHVIDHGEMSDAQAGR
FMDWQNRSIYPTYETSGWEYSNCVHGHAEVGRSVFGWDVYPDQHARPQDLADQMGNLRVRNYNSDSDSDG

Sequences:

>Translated_230_residues
MRRIGNFFRTRSHASGSSRGRTHEREEGSSGRAARSPSPALSDLPSSPRSRHVSTVASPTRFDDDGRVTYPGHIQYQTSE
SERERYPDLAEAVGHSRYTGPGSPRPERFPISGYFPDGQYFSVTGLRGPAIRSGDDAVIDRQHASHVIDHGEMSDAQAGR
FMDWQNRSIYPTYETSGWEYSNCVHGHAEVGRSVFGWDVYPDQHARPQDLADQMGNLRVRNYNSDSDSDG
>Mature_230_residues
MRRIGNFFRTRSHASGSSRGRTHEREEGSSGRAARSPSPALSDLPSSPRSRHVSTVASPTRFDDDGRVTYPGHIQYQTSE
SERERYPDLAEAVGHSRYTGPGSPRPERFPISGYFPDGQYFSVTGLRGPAIRSGDDAVIDRQHASHVIDHGEMSDAQAGR
FMDWQNRSIYPTYETSGWEYSNCVHGHAEVGRSVFGWDVYPDQHARPQDLADQMGNLRVRNYNSDSDSDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25693; Mature: 25693

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIGNFFRTRSHASGSSRGRTHEREEGSSGRAARSPSPALSDLPSSPRSRHVSTVASPT
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCC
RFDDDGRVTYPGHIQYQTSESERERYPDLAEAVGHSRYTGPGSPRPERFPISGYFPDGQY
EECCCCCEECCCEEEEECCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCE
FSVTGLRGPAIRSGDDAVIDRQHASHVIDHGEMSDAQAGRFMDWQNRSIYPTYETSGWEY
EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
SNCVHGHAEVGRSVFGWDVYPDQHARPQDLADQMGNLRVRNYNSDSDSDG
CCEECCHHHHCCEEECCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCC
>Mature Secondary Structure
MRRIGNFFRTRSHASGSSRGRTHEREEGSSGRAARSPSPALSDLPSSPRSRHVSTVASPT
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCC
RFDDDGRVTYPGHIQYQTSESERERYPDLAEAVGHSRYTGPGSPRPERFPISGYFPDGQY
EECCCCCEECCCEEEEECCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCE
FSVTGLRGPAIRSGDDAVIDRQHASHVIDHGEMSDAQAGRFMDWQNRSIYPTYETSGWEY
EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
SNCVHGHAEVGRSVFGWDVYPDQHARPQDLADQMGNLRVRNYNSDSDSDG
CCEECCHHHHCCEEECCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA