Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 17545101

GI number: 17545101

Start: 411163

End: 411750

Strand: Reverse

Name: pdtaR [H]

Synonym: RSc0382

Alternate gene names: 17545101

Gene position: 411750-411163 (Counterclockwise)

Preceding gene: 17545105

Following gene: 17545100

Centisome position: 11.08

GC content: 68.88

Gene sequence:

>588_bases
ATGGCACCCACGCGCGTGCTGCTGGTGCGCGATCCGCTCGACGCGGAGCAGGTCAACCTGGAGCTGATCCGCGCCGGACT
GGCCGAGGCCGGCTTCGTGGACGTGGGCGTGGTCGATGCCGACCTGATGCTGCCCGAGCGCATCGCCCAGACCCAGCCGG
ACATGGTGATCGTGGCCTCCGAATCGGCCGCGCGCGACACCATCGAGCACGTCTGCGTGGCCACCCAGCACGCGCCGCGC
CCCATCGTGCTGTTCACCGACAACGACGACGCGAGCCGCATCAAGGCGGCGTTCGCGGCCGGCATCACCGCCTATATCGT
CGACGGGCTCAAGCCGACCCGCGTGAAGGCGGTGCTGGATGTCGCCTACGCGCGGTTCGAGCACGAGCGCGCGCTGCGCG
CCGAGCTGGACAACGCCAAGACCCAGCTGGCCGAGCGCAAGGTGCTCGAGCGCGCCAAGGGCCTGCTGATGCAGCAGATG
CAGCTGTCGGAAGACGAAGCCTTCAAGCGCCTGCGCAAGATGGCGATGGACCGCAACATCAAGCTGGTGGAAGCGGCCCA
GCGGGTCATCGACGTCATGGCCGGCTAG

Upstream 100 bases:

>100_bases
TTGCGCACCGCCCCGGCGCGGTTCTTGCATGGGTGGCGTGCATAACGCCCCACTTTGCACCATGCAAACCAAGCCGCCCG
CCCCCTCCGTTCCTCGTGCC

Downstream 100 bases:

>100_bases
GCGGCCGCCACCGCCCACTTCTGGTGCGCCGCACAACTGCGGCGCAACCGGGCGCACCAATCGCGCCCCGCCGCGCGGCA
AGGCGCGGCCGCTGCATGGT

Product: response regulator transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MAPTRVLLVRDPLDAEQVNLELIRAGLAEAGFVDVGVVDADLMLPERIAQTQPDMVIVASESAARDTIEHVCVATQHAPR
PIVLFTDNDDASRIKAAFAAGITAYIVDGLKPTRVKAVLDVAYARFEHERALRAELDNAKTQLAERKVLERAKGLLMQQM
QLSEDEAFKRLRKMAMDRNIKLVEAAQRVIDVMAG

Sequences:

>Translated_195_residues
MAPTRVLLVRDPLDAEQVNLELIRAGLAEAGFVDVGVVDADLMLPERIAQTQPDMVIVASESAARDTIEHVCVATQHAPR
PIVLFTDNDDASRIKAAFAAGITAYIVDGLKPTRVKAVLDVAYARFEHERALRAELDNAKTQLAERKVLERAKGLLMQQM
QLSEDEAFKRLRKMAMDRNIKLVEAAQRVIDVMAG
>Mature_194_residues
APTRVLLVRDPLDAEQVNLELIRAGLAEAGFVDVGVVDADLMLPERIAQTQPDMVIVASESAARDTIEHVCVATQHAPRP
IVLFTDNDDASRIKAAFAAGITAYIVDGLKPTRVKAVLDVAYARFEHERALRAELDNAKTQLAERKVLERAKGLLMQQMQ
LSEDEAFKRLRKMAMDRNIKLVEAAQRVIDVMAG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21529; Mature: 21398

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50921 ANTAR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTRVLLVRDPLDAEQVNLELIRAGLAEAGFVDVGVVDADLMLPERIAQTQPDMVIVAS
CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCHHHHHCCCCCEEEEEC
ESAARDTIEHVCVATQHAPRPIVLFTDNDDASRIKAAFAAGITAYIVDGLKPTRVKAVLD
CHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VAYARFEHERALRAELDNAKTQLAERKVLERAKGLLMQQMQLSEDEAFKRLRKMAMDRNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
KLVEAAQRVIDVMAG
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
APTRVLLVRDPLDAEQVNLELIRAGLAEAGFVDVGVVDADLMLPERIAQTQPDMVIVAS
CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHCHHHHHCCCCCEEEEEC
ESAARDTIEHVCVATQHAPRPIVLFTDNDDASRIKAAFAAGITAYIVDGLKPTRVKAVLD
CHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VAYARFEHERALRAELDNAKTQLAERKVLERAKGLLMQQMQLSEDEAFKRLRKMAMDRNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
KLVEAAQRVIDVMAG
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]