| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is gpmA [H]
Identifier: 17545072
GI number: 17545072
Start: 385285
End: 386088
Strand: Reverse
Name: gpmA [H]
Synonym: RSc0353
Alternate gene names: 17545072
Gene position: 386088-385285 (Counterclockwise)
Preceding gene: 17545077
Following gene: 17545071
Centisome position: 10.39
GC content: 66.79
Gene sequence:
>804_bases ATGACGCAGCGCGTCCCGGCCACCGCGCAGGTTTTCTCACTTCTCATCATGGCAGTCATGCACAAGCTCGTCCTCATCCG CCACGGCGAATCGACGTGGAACCTCGAAAACCGCTTCACCGGCTGGGTCGACGTCGACCTGACCGACACCGGCATCGCCC AGGCCCGCCAGGGCGGCCGCCTGCTGCGCGAAGCCGGCTTCACCTTCGACCTGGCCTACACCTCGGTGCTCAAGCGCGCC ATCCGCACACTGTGGCACGTGCAGGATGAAATGGACCTGATGTGGATCCCGACCCGCACCGAATGGCGCCTGAACGAGCG CCACTATGGCGGCCTGTCGGGTCTGAACAAGGCCGAGACCGCCGCCCAGTACGGCGACCAGCAGGTGCTGGTCTGGCGCC GCAGCTACGACACGCCGCCGCCCGCGCTGGAAGCCGGCGACGAGCGCGACGCGTATGGCAACCCGCGCTATGCGGGCCTG CCGCGCGAACAGGTGCCGCTCACCGAATGCCTGAAGGACACCGTGGCGCGCGTGCTGCCGCTGTGGGAAACGTCGATCGC CCCGGACATCAAGAGCGGCAAGCGCGTCGTGATCGCCGCGCACGGCAACAGCATCCGCGCCCTGGTGAAGTACCTCGACA ACATCTCGGACGACGACATCGTCGGCCTGAACATCCCCAACGGCACGCCGCTCGTCTACGAACTGGACGCCAACCTGAAG CCCATCCGCCATTACTATCTCGGCGACCAGGAAGCGATCGCCGCGTCGCTCGCCGCCGTGGCTGGCCAGGGCAAGGCGAA ATAA
Upstream 100 bases:
>100_bases GGCTGGCGGCCAAATCGGCGCGCATCGCGACGTCATCCGAACAGTTCGGGGTGCACGGTGCCGGCGGCATTATAAAATAG CGCGTTTCGGCGGCCGCTCG
Downstream 100 bases:
>100_bases AGCGTAACCGCCGGGCGTAACGGCGCAGGGCACTTCCAACGCCTTTATACTGTCGAAACGCCAGCCCGGGACACGCACCA GCGGTCCCGGGCCATGTTTA
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM [H]
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MTQRVPATAQVFSLLIMAVMHKLVLIRHGESTWNLENRFTGWVDVDLTDTGIAQARQGGRLLREAGFTFDLAYTSVLKRA IRTLWHVQDEMDLMWIPTRTEWRLNERHYGGLSGLNKAETAAQYGDQQVLVWRRSYDTPPPALEAGDERDAYGNPRYAGL PREQVPLTECLKDTVARVLPLWETSIAPDIKSGKRVVIAAHGNSIRALVKYLDNISDDDIVGLNIPNGTPLVYELDANLK PIRHYYLGDQEAIAASLAAVAGQGKAK
Sequences:
>Translated_267_residues MTQRVPATAQVFSLLIMAVMHKLVLIRHGESTWNLENRFTGWVDVDLTDTGIAQARQGGRLLREAGFTFDLAYTSVLKRA IRTLWHVQDEMDLMWIPTRTEWRLNERHYGGLSGLNKAETAAQYGDQQVLVWRRSYDTPPPALEAGDERDAYGNPRYAGL PREQVPLTECLKDTVARVLPLWETSIAPDIKSGKRVVIAAHGNSIRALVKYLDNISDDDIVGLNIPNGTPLVYELDANLK PIRHYYLGDQEAIAASLAAVAGQGKAK >Mature_266_residues TQRVPATAQVFSLLIMAVMHKLVLIRHGESTWNLENRFTGWVDVDLTDTGIAQARQGGRLLREAGFTFDLAYTSVLKRAI RTLWHVQDEMDLMWIPTRTEWRLNERHYGGLSGLNKAETAAQYGDQQVLVWRRSYDTPPPALEAGDERDAYGNPRYAGLP REQVPLTECLKDTVARVLPLWETSIAPDIKSGKRVVIAAHGNSIRALVKYLDNISDDDIVGLNIPNGTPLVYELDANLKP IRHYYLGDQEAIAASLAAVAGQGKAK
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily [H]
Homologues:
Organism=Homo sapiens, GI50593010, Length=253, Percent_Identity=55.3359683794466, Blast_Score=303, Evalue=1e-82, Organism=Homo sapiens, GI4505753, Length=250, Percent_Identity=58.4, Blast_Score=296, Evalue=1e-80, Organism=Homo sapiens, GI71274132, Length=250, Percent_Identity=56.4, Blast_Score=285, Evalue=4e-77, Organism=Homo sapiens, GI4502445, Length=252, Percent_Identity=46.8253968253968, Blast_Score=257, Evalue=9e-69, Organism=Homo sapiens, GI40353764, Length=252, Percent_Identity=46.8253968253968, Blast_Score=257, Evalue=9e-69, Organism=Homo sapiens, GI310129614, Length=162, Percent_Identity=59.8765432098765, Blast_Score=194, Evalue=9e-50, Organism=Escherichia coli, GI1786970, Length=251, Percent_Identity=61.3545816733068, Blast_Score=320, Evalue=9e-89, Organism=Saccharomyces cerevisiae, GI6322697, Length=246, Percent_Identity=51.219512195122, Blast_Score=235, Evalue=6e-63, Organism=Saccharomyces cerevisiae, GI6320183, Length=299, Percent_Identity=32.4414715719064, Blast_Score=137, Evalue=1e-33, Organism=Saccharomyces cerevisiae, GI6324516, Length=296, Percent_Identity=32.4324324324324, Blast_Score=137, Evalue=2e-33, Organism=Drosophila melanogaster, GI24646216, Length=251, Percent_Identity=50.597609561753, Blast_Score=258, Evalue=3e-69, Organism=Drosophila melanogaster, GI85725270, Length=255, Percent_Identity=51.3725490196078, Blast_Score=257, Evalue=6e-69, Organism=Drosophila melanogaster, GI85725272, Length=255, Percent_Identity=51.3725490196078, Blast_Score=257, Evalue=6e-69, Organism=Drosophila melanogaster, GI24650981, Length=255, Percent_Identity=51.3725490196078, Blast_Score=257, Evalue=6e-69, Organism=Drosophila melanogaster, GI28571815, Length=257, Percent_Identity=38.1322957198444, Blast_Score=182, Evalue=2e-46, Organism=Drosophila melanogaster, GI28571817, Length=257, Percent_Identity=38.1322957198444, Blast_Score=182, Evalue=2e-46, Organism=Drosophila melanogaster, GI24648979, Length=256, Percent_Identity=38.28125, Blast_Score=182, Evalue=3e-46,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 29805; Mature: 29674
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRVPATAQVFSLLIMAVMHKLVLIRHGESTWNLENRFTGWVDVDLTDTGIAQARQGGR CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCH LLREAGFTFDLAYTSVLKRAIRTLWHVQDEMDLMWIPTRTEWRLNERHYGGLSGLNKAET HHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHH AAQYGDQQVLVWRRSYDTPPPALEAGDERDAYGNPRYAGLPREQVPLTECLKDTVARVLP HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LWETSIAPDIKSGKRVVIAAHGNSIRALVKYLDNISDDDIVGLNIPNGTPLVYELDANLK HHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCCCC PIRHYYLGDQEAIAASLAAVAGQGKAK HHHHHHCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TQRVPATAQVFSLLIMAVMHKLVLIRHGESTWNLENRFTGWVDVDLTDTGIAQARQGGR CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCH LLREAGFTFDLAYTSVLKRAIRTLWHVQDEMDLMWIPTRTEWRLNERHYGGLSGLNKAET HHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHH AAQYGDQQVLVWRRSYDTPPPALEAGDERDAYGNPRYAGLPREQVPLTECLKDTVARVLP HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LWETSIAPDIKSGKRVVIAAHGNSIRALVKYLDNISDDDIVGLNIPNGTPLVYELDANLK HHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEECCCCC PIRHYYLGDQEAIAASLAAVAGQGKAK HHHHHHCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]