| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is dctB2 [H]
Identifier: 17545050
GI number: 17545050
Start: 362536
End: 364533
Strand: Direct
Name: dctB2 [H]
Synonym: RSc0331
Alternate gene names: 17545050
Gene position: 362536-364533 (Clockwise)
Preceding gene: 17545049
Following gene: 17545051
Centisome position: 9.75
GC content: 71.12
Gene sequence:
>1998_bases ATGCGCCACGGCACCGAGCGGCTGATGGCCGGCGCGGCCCCGGAAGGCACGGCGAGCCCGTCCGCCGTTCACCACCCGCC GATGTCCGAGCCCGATTTCCCGTTTTCCTCCGCCAGCCCGCGCCGCGGCTTCGGGTGGCTGGTGGCGGCCGCTCTGGTGG CGGTGATGGCGCTGGTGTGCGCGACGACCTTCGTGGTGACCTGGAACCGCGGCCTGTCGCAGGCCCAGCAGGCCGCCGGC GCCCGCGTCGACCGCTATGCCGCCAACCTCAAGAGCACGCTCGACCGCTACGAGTACCTGCCGGCGCTGGTCGCGCTGCA TCCGTTCATCCACGACCTGCTGGCCCACCCGACGCCCGACAACGTCGCGCGCGCCAACCACTACCTGCGCGAGGTCAACG ACCGCGCCCGCGCCACCGCCACCTACGTGATCGCCCCGACCGGCCTGGCCCTGGCGGCATCCAACTACAACCTGCCCGAT AGCTTCGTCGGCGCCGAATACCTGTTCCGGCCGTATTTCCAGCAGGCGGCCGCCGGACACGTCGGGCGCTTCTACGGCAT CGGCATCACGCGCGAGGAGCCCGGCTACTACATCTCGCAGCCGGTGATGCAGAACGGCAGCGTGATCGGCGTGACGGTGG TCAAGCTCAACCTGGAGTGGTTCGGCCGCGCCAGCCATGATGCCTCCGAGCCGGTGATGGTGGCCGACGAGAACGGCGTG ATCTTCCTGTCGTCGGTGCCGGCGTGGCAGTACCGCACGGTCGAGCCGCTCACGCCCGAGCTGCAGGCGCAGCTGCAGGC GACCCGCCAGTACTTCCGCAAGCAGATCACGCCGCTGCCGCTGCAGCCCGAGATGCCGGCCTTCCTGAAGCTGGTCGGGC GCATGCCCGACGGCGCGCGTCTGGTGCGCGTCGGCGACCGCATCAACGCGCCGCGCTACCTGCTGGTATCGCGCGAGCTG GTCGAGCCCGACTGGCAGCTGATGTACCTGACGCCCATCGATCCGGTGATGGGCGCGGCGCGCAGCGCGACGGTCGCCGC GGCCTTCGCCTTCGCCTTCGTCTGCCTGCTGCTGTTCTATTGGCGCCAGCGCCGGCTGCGCCTGAGGGAGATGCTGCGCG GCCGCCGCCTGCTCGAAGCGGCCTACGACCAGCTGGAGCGCCGCGTCGAAGACCGCACCGCCGACCTGATGGCAACCAAC GAGCAACTGCAGCACGAGATCGTCGACCGCACCCGCGCCGAAGCCGAGCTGCGCGCCACGCAGGACGAACTCGTGCAGGC CAGCAAGCTTGCCGCCCTGGGGCAGATGGCGGCCGGCATCACGCACGAGCTCAACCAGCCGCTGGCTGCGCTGCGCACCT TCTCCGACAACACGCGCATCCTGCTGGAGCGCGGCCAGCACGGCGCCGCCGCCGACAACCTGCGCGCCATCGCCGACCTG ACCGAACGCATGGGCAAGATCACCGCGCAGCTCAAGCTGTTTGCCGGCCGCTCGCGCCGCAGGCTTGCCGATGTGCAGGT GCGCGTGGCGCTCGACCACGTGCTGGCGCTGCTGCGCCCGCGCCTGGCCGAGGTGGAGACCGCGCTGCACTGGCGCCTGC CCGAGGCCGCATGCGTGGTCCGCGCGGATGAGCTCAAGCTGGAGCAGGTGCTGATCAACCTGATCGGCAACGCGCTCGAC GCCATCGCCGCCAACGATCTGCCGCGCCCCGGCCGCATCGACATCGACATCGGCCCGGCCGATGGCGCGCCCGCGCAGCT GTGCATCGTCGTGCGCGACAATGGCCCCGGCATTGCGGCCGATGCCATGCCGCACCTGTTCGAACCGTTCTTCACCACCA AGGAGATCGGCCAGGGCCTCGGCCTGGGGCTGGCGATTTCCACCAGCATCGCGCGCGACTTCGGCGGCTCGCTGTCGGCG GCCAATGTGCCGGGCGGCGGCGCCCAGTTCACGCTGTCGCTGGTCCGCGCCGAGGTGGTGCCGGCCGCGACGCCCTGA
Upstream 100 bases:
>100_bases GCCAGAGCCGGCGGTGCCCCACCGGGGCGTCGCCGGATGGCAAGCGTATGATGGCGGGGCCGCTCCTTCCGGACGGCCCC GCTTTCTTTTGGAAAGTGTG
Downstream 100 bases:
>100_bases CCCATTCCTTTCACCCAAACGATCCATGTCCGAAGGCTTGAACGTTCTCTTCATCGAAGACGATCCGCCCGTCCGCCAGG CCACCGCGCAGAGCCTGGAG
Product: C4-dicarboxylate transport sensor kinase transcription regulator protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 665; Mature: 665
Protein sequence:
>665_residues MRHGTERLMAGAAPEGTASPSAVHHPPMSEPDFPFSSASPRRGFGWLVAAALVAVMALVCATTFVVTWNRGLSQAQQAAG ARVDRYAANLKSTLDRYEYLPALVALHPFIHDLLAHPTPDNVARANHYLREVNDRARATATYVIAPTGLALAASNYNLPD SFVGAEYLFRPYFQQAAAGHVGRFYGIGITREEPGYYISQPVMQNGSVIGVTVVKLNLEWFGRASHDASEPVMVADENGV IFLSSVPAWQYRTVEPLTPELQAQLQATRQYFRKQITPLPLQPEMPAFLKLVGRMPDGARLVRVGDRINAPRYLLVSREL VEPDWQLMYLTPIDPVMGAARSATVAAAFAFAFVCLLLFYWRQRRLRLREMLRGRRLLEAAYDQLERRVEDRTADLMATN EQLQHEIVDRTRAEAELRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRAIADL TERMGKITAQLKLFAGRSRRRLADVQVRVALDHVLALLRPRLAEVETALHWRLPEAACVVRADELKLEQVLINLIGNALD AIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGIAADAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSA ANVPGGGAQFTLSLVRAEVVPAATP
Sequences:
>Translated_665_residues MRHGTERLMAGAAPEGTASPSAVHHPPMSEPDFPFSSASPRRGFGWLVAAALVAVMALVCATTFVVTWNRGLSQAQQAAG ARVDRYAANLKSTLDRYEYLPALVALHPFIHDLLAHPTPDNVARANHYLREVNDRARATATYVIAPTGLALAASNYNLPD SFVGAEYLFRPYFQQAAAGHVGRFYGIGITREEPGYYISQPVMQNGSVIGVTVVKLNLEWFGRASHDASEPVMVADENGV IFLSSVPAWQYRTVEPLTPELQAQLQATRQYFRKQITPLPLQPEMPAFLKLVGRMPDGARLVRVGDRINAPRYLLVSREL VEPDWQLMYLTPIDPVMGAARSATVAAAFAFAFVCLLLFYWRQRRLRLREMLRGRRLLEAAYDQLERRVEDRTADLMATN EQLQHEIVDRTRAEAELRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRAIADL TERMGKITAQLKLFAGRSRRRLADVQVRVALDHVLALLRPRLAEVETALHWRLPEAACVVRADELKLEQVLINLIGNALD AIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGIAADAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSA ANVPGGGAQFTLSLVRAEVVPAATP >Mature_665_residues MRHGTERLMAGAAPEGTASPSAVHHPPMSEPDFPFSSASPRRGFGWLVAAALVAVMALVCATTFVVTWNRGLSQAQQAAG ARVDRYAANLKSTLDRYEYLPALVALHPFIHDLLAHPTPDNVARANHYLREVNDRARATATYVIAPTGLALAASNYNLPD SFVGAEYLFRPYFQQAAAGHVGRFYGIGITREEPGYYISQPVMQNGSVIGVTVVKLNLEWFGRASHDASEPVMVADENGV IFLSSVPAWQYRTVEPLTPELQAQLQATRQYFRKQITPLPLQPEMPAFLKLVGRMPDGARLVRVGDRINAPRYLLVSREL VEPDWQLMYLTPIDPVMGAARSATVAAAFAFAFVCLLLFYWRQRRLRLREMLRGRRLLEAAYDQLERRVEDRTADLMATN EQLQHEIVDRTRAEAELRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRAIADL TERMGKITAQLKLFAGRSRRRLADVQVRVALDHVLALLRPRLAEVETALHWRLPEAACVVRADELKLEQVLINLIGNALD AIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGIAADAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSA ANVPGGGAQFTLSLVRAEVVPAATP
Specific function: Member of the two-component regulatory system dctB/dctD involved in the transport of C4-dicarboxylates. DctB functions as a membrane-associated protein kinase that phosphorylates dctD in response to environmental signals [H]
COG id: COG4191
COG function: function code T; Signal transduction histidine kinase regulating C4-dicarboxylate transport system
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=235, Percent_Identity=32.7659574468085, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1788549, Length=270, Percent_Identity=30.3703703703704, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI145693157, Length=259, Percent_Identity=26.6409266409266, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI87081816, Length=286, Percent_Identity=27.972027972028, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1789149, Length=288, Percent_Identity=25.6944444444444, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI1788393, Length=258, Percent_Identity=29.8449612403101, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI1786912, Length=252, Percent_Identity=27.3809523809524, Blast_Score=63, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR017055 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 72786; Mature: 72786
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHGTERLMAGAAPEGTASPSAVHHPPMSEPDFPFSSASPRRGFGWLVAAALVAVMALVC CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ATTFVVTWNRGLSQAQQAAGARVDRYAANLKSTLDRYEYLPALVALHPFIHDLLAHPTPD HHHHHEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NVARANHYLREVNDRARATATYVIAPTGLALAASNYNLPDSFVGAEYLFRPYFQQAAAGH HHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC VGRFYGIGITREEPGYYISQPVMQNGSVIGVTVVKLNLEWFGRASHDASEPVMVADENGV CCCEEECCEECCCCCCEECCHHHCCCCEEEEEEEEEEHHHCCCCCCCCCCCEEEECCCCE IFLSSVPAWQYRTVEPLTPELQAQLQATRQYFRKQITPLPLQPEMPAFLKLVGRMPDGAR EEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCE LVRVGDRINAPRYLLVSRELVEPDWQLMYLTPIDPVMGAARSATVAAAFAFAFVCLLLFY EEEECCCCCCCEEEEEEHHHCCCCCEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHH WRQRRLRLREMLRGRRLLEAAYDQLERRVEDRTADLMATNEQLQHEIVDRTRAEAELRAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRAIADL HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH TERMGKITAQLKLFAGRSRRRLADVQVRVALDHVLALLRPRLAEVETALHWRLPEAACVV HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE RADELKLEQVLINLIGNALDAIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGIAA EHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCH DAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSAANVPGGGAQFTLSLVRAEVV HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC PAATP CCCCC >Mature Secondary Structure MRHGTERLMAGAAPEGTASPSAVHHPPMSEPDFPFSSASPRRGFGWLVAAALVAVMALVC CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ATTFVVTWNRGLSQAQQAAGARVDRYAANLKSTLDRYEYLPALVALHPFIHDLLAHPTPD HHHHHEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NVARANHYLREVNDRARATATYVIAPTGLALAASNYNLPDSFVGAEYLFRPYFQQAAAGH HHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC VGRFYGIGITREEPGYYISQPVMQNGSVIGVTVVKLNLEWFGRASHDASEPVMVADENGV CCCEEECCEECCCCCCEECCHHHCCCCEEEEEEEEEEHHHCCCCCCCCCCCEEEECCCCE IFLSSVPAWQYRTVEPLTPELQAQLQATRQYFRKQITPLPLQPEMPAFLKLVGRMPDGAR EEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCE LVRVGDRINAPRYLLVSRELVEPDWQLMYLTPIDPVMGAARSATVAAAFAFAFVCLLLFY EEEECCCCCCCEEEEEEHHHCCCCCEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHH WRQRRLRLREMLRGRRLLEAAYDQLERRVEDRTADLMATNEQLQHEIVDRTRAEAELRAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRAIADL HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH TERMGKITAQLKLFAGRSRRRLADVQVRVALDHVLALLRPRLAEVETALHWRLPEAACVV HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE RADELKLEQVLINLIGNALDAIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGIAA EHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCH DAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSAANVPGGGAQFTLSLVRAEVV HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC PAATP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2134335; 2793824; 11481431; 2551890; 2695394 [H]