| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545029
Identifier: 17545029
GI number: 17545029
Start: 341463
End: 342281
Strand: Reverse
Name: 17545029
Synonym: RSc0310
Alternate gene names: NA
Gene position: 342281-341463 (Counterclockwise)
Preceding gene: 17545030
Following gene: 17545026
Centisome position: 9.21
GC content: 72.89
Gene sequence:
>819_bases ATGACGCTTCGCCTCGCCCTGCTGCTTCTGCTGCTCGCCAACGGCGTCTTGCTGGCCGCCAACCTGGGCGTGTTCGGCCC CGATATTCCATCCGCCTGGTTCGAGAGCGAGCGCGAGCCCGATCGCATGCAGCGCCAGATCCGCACCGAAGACATCCGCC TCCTGGAGCCGGCGTCCGCTTCCACGCCCGCCGCGCCCAAGGCAGCCCCGGCGCCCACGCCTGCGCCCGCCGCCTCGTCA CCGGAAGCGGCTTCGGCGCCCGCCGCCGCCAGCGATGCCGGCCCGGCCATCGAACGCACCGCGCTCGCCCCGGCCGACAC AACCACCGCCGCCAACTGCATGGAGCTCGGCGGCCTGACCGACGCCCAGGCCGCGCGCGGCACCGATCAGCTGCGCCAGC TCGCAGGCGTGCAGGTCGAGCGGGTGACGCGCCAGGATGACATCCGCTGGTGGGTCCACATGCCCGCGCGCGGAACGCGC GAAGACGCCGACCGCAAGGTGACCGAACTCAAGCGCCGCAATGTCGCCGATTCGGCCATCGTGCAGGAAGCGGGCGGATT CGTGGTCTCGCTCGGGCTGTTCCGCGACAAGGGTCGCGCCCAGCAGCGGCTGGACGATCTGCGCGCCCACGACGTGCGCA CCGCCGTGCTGACGGAAACGCACCGCAATGCCTCGCGCGCATGGCTGCGCATCACGGCATCGGGCGATGCCGCACCGGAC CTCGCGGCCCAGCTGGCCACCCTCAAGACGCGCCTGGGCGCCGATGAATTGCGCGCCTGCACGGCGCCGCAGGCCGCCAC CCTGGCCGCCGCGCACTGA
Upstream 100 bases:
>100_bases GGCGCCGCGACGCAAGCCTGAGCACCATCGCCGTTCCCGTTTCCCTGTTGTAGCCGTGTTCCTGCATTCCGCACCACCGT CCGACGCCGATTCCCGCACC
Downstream 100 bases:
>100_bases AGCGGCGCCGGCGCTCCGGAACTCAGGACGTCGCGCGCACGCGCTTGAGCAGCTGCGTCGTCGAGCGGTCGTGGTCGAAC GGAATCGCCAAGGCCGTCCC
Product: signal peptide protein
Products: NA
Alternate protein names: Sporulation Domain Protein
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MTLRLALLLLLLANGVLLAANLGVFGPDIPSAWFESEREPDRMQRQIRTEDIRLLEPASASTPAAPKAAPAPTPAPAASS PEAASAPAAASDAGPAIERTALAPADTTTAANCMELGGLTDAQAARGTDQLRQLAGVQVERVTRQDDIRWWVHMPARGTR EDADRKVTELKRRNVADSAIVQEAGGFVVSLGLFRDKGRAQQRLDDLRAHDVRTAVLTETHRNASRAWLRITASGDAAPD LAAQLATLKTRLGADELRACTAPQAATLAAAH
Sequences:
>Translated_272_residues MTLRLALLLLLLANGVLLAANLGVFGPDIPSAWFESEREPDRMQRQIRTEDIRLLEPASASTPAAPKAAPAPTPAPAASS PEAASAPAAASDAGPAIERTALAPADTTTAANCMELGGLTDAQAARGTDQLRQLAGVQVERVTRQDDIRWWVHMPARGTR EDADRKVTELKRRNVADSAIVQEAGGFVVSLGLFRDKGRAQQRLDDLRAHDVRTAVLTETHRNASRAWLRITASGDAAPD LAAQLATLKTRLGADELRACTAPQAATLAAAH >Mature_271_residues TLRLALLLLLLANGVLLAANLGVFGPDIPSAWFESEREPDRMQRQIRTEDIRLLEPASASTPAAPKAAPAPTPAPAASSP EAASAPAAASDAGPAIERTALAPADTTTAANCMELGGLTDAQAARGTDQLRQLAGVQVERVTRQDDIRWWVHMPARGTRE DADRKVTELKRRNVADSAIVQEAGGFVVSLGLFRDKGRAQQRLDDLRAHDVRTAVLTETHRNASRAWLRITASGDAAPDL AAQLATLKTRLGADELRACTAPQAATLAAAH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28836; Mature: 28705
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRLALLLLLLANGVLLAANLGVFGPDIPSAWFESEREPDRMQRQIRTEDIRLLEPASA CHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHEEECCCCC STPAAPKAAPAPTPAPAASSPEAASAPAAASDAGPAIERTALAPADTTTAANCMELGGLT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCC DAQAARGTDQLRQLAGVQVERVTRQDDIRWWVHMPARGTREDADRKVTELKRRNVADSAI HHHHHCCHHHHHHHHCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHH VQEAGGFVVSLGLFRDKGRAQQRLDDLRAHDVRTAVLTETHRNASRAWLRITASGDAAPD HHHHCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHH LAAQLATLKTRLGADELRACTAPQAATLAAAH HHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCC >Mature Secondary Structure TLRLALLLLLLANGVLLAANLGVFGPDIPSAWFESEREPDRMQRQIRTEDIRLLEPASA HHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHEEECCCCC STPAAPKAAPAPTPAPAASSPEAASAPAAASDAGPAIERTALAPADTTTAANCMELGGLT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCC DAQAARGTDQLRQLAGVQVERVTRQDDIRWWVHMPARGTREDADRKVTELKRRNVADSAI HHHHHCCHHHHHHHHCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHH VQEAGGFVVSLGLFRDKGRAQQRLDDLRAHDVRTAVLTETHRNASRAWLRITASGDAAPD HHHHCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHH LAAQLATLKTRLGADELRACTAPQAATLAAAH HHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA