Click here to switch to the map view.

The map label for this gene is yagI [H]

Identifier: 17545021

GI number: 17545021

Start: 334737

End: 335624

Strand: Reverse

Name: yagI [H]

Synonym: RSc0302

Alternate gene names: 17545021

Gene position: 335624-334737 (Counterclockwise)

Preceding gene: 17545026

Following gene: 17545019

Centisome position: 9.03

GC content: 73.2

Gene sequence:

>888_bases
ATGCCTCTCGACGACGATCTCCCGGCCGATGCCGCCGCGCCGGACAGCGCCCCGGCCGAACGTGCCGGCACCGGCATCCA
GTCCGCCGAGATCGCGCTGACGGTGCTGTCGGCCATGGCTCGCACCGGCGGCGCGCACGCCGTCTCCGAACTCGGCCGCC
AATTGGGCATGCCCCGTGCCAAGGTGCACCGCTACCTGGTGTCGCTCGAACGCATGGGCTTCGTCGAGCAGGACCCCGCC
TCCGCGCGCTATCGCCTCGGCACGCAGGCGCTGCAGGTGGGGCTGTCCGCCCTGACCGACGTCGATTTCGTGCGCGAAGG
CAGCCTCATGCTGCCCAAGCTGGCCGAGCGCCTGAACGAAAGCGTGTTCCTGTCGGTGTGGAGCGAGCGCGGACCGGTCA
TCGTGCGCTGGGAAGACGGCGACAAGCCGGTCACGATCAATGTGCGCGTCGGCTCGGTGATGCCGCTGCTGAATTCGGCC
ACCGGCCAGGCCTGCGCGGCATGGATGCCGGAAACCCAGATCGCCCCGCTGATCGACCGCGAGCTGCACGGCCCGGGCGC
GGCCCGCGTCGGCCTGACCGACTGGCTGAACTGCCGCGCCCGCTGGCAGGCCGTGCGGCACGAGGGCGTGGCGCGCATCA
CCGGCACGCTGGTCCACGGCATCAACTCCGTGGCCGTGCCGGTGCTGGATGCGCAAGGCAGGCTGGCCGGCGCGATCACC
GCGCTGGGGTTGTCCAGCGTGTTCGACGCCGACGAAGGCGGCGCGCCCGCGCGGCTGCTGCGCGAAGCCGGCCGGGCGCT
GTCGCTGCGCCTGGGCTACCACGGCCACGCGCTGACGGCCGGGGCCGCCGTGCCGGCCAAGCGGGGACGCCGACCGGCGC
CGGCGTAA

Upstream 100 bases:

>100_bases
CCTCACGGCATCCCCCGTGCTTCCGCGATGCAAGACCGCCGCATCGGTTGTATCTTCTTCCGTAACGCGTATCTTAGAAA
GTGACACCCAGGGCTTCAAG

Downstream 100 bases:

>100_bases
CCGTCCGGACCGGCACCGCGTGCCTCATCGCTGCGCGTCGGGCGCCATCACTTCCTGGTCGATCGCGCCGAAGACCGAAG
CGCCGTTGCCGTCGAACATC

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MPLDDDLPADAAAPDSAPAERAGTGIQSAEIALTVLSAMARTGGAHAVSELGRQLGMPRAKVHRYLVSLERMGFVEQDPA
SARYRLGTQALQVGLSALTDVDFVREGSLMLPKLAERLNESVFLSVWSERGPVIVRWEDGDKPVTINVRVGSVMPLLNSA
TGQACAAWMPETQIAPLIDRELHGPGAARVGLTDWLNCRARWQAVRHEGVARITGTLVHGINSVAVPVLDAQGRLAGAIT
ALGLSSVFDADEGGAPARLLREAGRALSLRLGYHGHALTAGAAVPAKRGRRPAPA

Sequences:

>Translated_295_residues
MPLDDDLPADAAAPDSAPAERAGTGIQSAEIALTVLSAMARTGGAHAVSELGRQLGMPRAKVHRYLVSLERMGFVEQDPA
SARYRLGTQALQVGLSALTDVDFVREGSLMLPKLAERLNESVFLSVWSERGPVIVRWEDGDKPVTINVRVGSVMPLLNSA
TGQACAAWMPETQIAPLIDRELHGPGAARVGLTDWLNCRARWQAVRHEGVARITGTLVHGINSVAVPVLDAQGRLAGAIT
ALGLSSVFDADEGGAPARLLREAGRALSLRLGYHGHALTAGAAVPAKRGRRPAPA
>Mature_294_residues
PLDDDLPADAAAPDSAPAERAGTGIQSAEIALTVLSAMARTGGAHAVSELGRQLGMPRAKVHRYLVSLERMGFVEQDPAS
ARYRLGTQALQVGLSALTDVDFVREGSLMLPKLAERLNESVFLSVWSERGPVIVRWEDGDKPVTINVRVGSVMPLLNSAT
GQACAAWMPETQIAPLIDRELHGPGAARVGLTDWLNCRARWQAVRHEGVARITGTLVHGINSVAVPVLDAQGRLAGAITA
LGLSSVFDADEGGAPARLLREAGRALSLRLGYHGHALTAGAAVPAKRGRRPAPA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=253, Percent_Identity=25.296442687747, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788131, Length=229, Percent_Identity=22.707423580786, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082359, Length=176, Percent_Identity=27.8409090909091, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789999, Length=252, Percent_Identity=25, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786715, Length=258, Percent_Identity=23.2558139534884, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 31097; Mature: 30966

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLDDDLPADAAAPDSAPAERAGTGIQSAEIALTVLSAMARTGGAHAVSELGRQLGMPRA
CCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH
KVHRYLVSLERMGFVEQDPASARYRLGTQALQVGLSALTDVDFVREGSLMLPKLAERLNE
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
SVFLSVWSERGPVIVRWEDGDKPVTINVRVGSVMPLLNSATGQACAAWMPETQIAPLIDR
CEEEEEECCCCCEEEEEECCCCEEEEEEECCCHHHHHHCCCCCHHHHCCCCCCCCHHHHH
ELHGPGAARVGLTDWLNCRARWQAVRHEGVARITGTLVHGINSVAVPVLDAQGRLAGAIT
HCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEEEECCCCCHHHHHH
ALGLSSVFDADEGGAPARLLREAGRALSLRLGYHGHALTAGAAVPAKRGRRPAPA
HHHHHHHHCCCCCCCHHHHHHHCCCEEEEEECCCCCEEECCCCCCHHCCCCCCCC
>Mature Secondary Structure 
PLDDDLPADAAAPDSAPAERAGTGIQSAEIALTVLSAMARTGGAHAVSELGRQLGMPRA
CCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH
KVHRYLVSLERMGFVEQDPASARYRLGTQALQVGLSALTDVDFVREGSLMLPKLAERLNE
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
SVFLSVWSERGPVIVRWEDGDKPVTINVRVGSVMPLLNSATGQACAAWMPETQIAPLIDR
CEEEEEECCCCCEEEEEECCCCEEEEEEECCCHHHHHHCCCCCHHHHCCCCCCCCHHHHH
ELHGPGAARVGLTDWLNCRARWQAVRHEGVARITGTLVHGINSVAVPVLDAQGRLAGAIT
HCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEEEECCCCCHHHHHH
ALGLSSVFDADEGGAPARLLREAGRALSLRLGYHGHALTAGAAVPAKRGRRPAPA
HHHHHHHHCCCCCCCHHHHHHHCCCEEEEEECCCCCEEECCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]