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The map label for this gene is ycaC [H]

Identifier: 17544961

GI number: 17544961

Start: 266542

End: 267228

Strand: Reverse

Name: ycaC [H]

Synonym: RSc0242

Alternate gene names: 17544961

Gene position: 267228-266542 (Counterclockwise)

Preceding gene: 17544962

Following gene: 17544960

Centisome position: 7.19

GC content: 65.21

Gene sequence:

>687_bases
ATGAGCAACCCCAAGCTGGAAGTGCTGACCCCGCAGAACTGTCAACTGATCTTCATCGACCATCAGCCGCAGATGGCCTT
CGGCGTGCAGTCGATCGACCGCCAGGTCCTGAAGAACAACACGGTCGGCCTGGCCAAGGCCGCCAGGATCTTCGACATCC
CCACCACCATCACCACCGTGGAGACGGAGGGCTTCTCCGGCTACACCTACCCCGAGCTGCTCGATGTGTTCCCGGGCAAG
GAACTGCTCGAGCGCACCTCGATGAACTCCTGGGACGACCAGAAAGTGCGCGATGTCCTGGCCAGGAACGGCCGCAAGAA
GGTGGTGGTCTCCGGCCTGTGGACAGAGGTCTGCAACACCACCTTCGCCCTGTGCGCCATGGCCGAGGGCGGCTACGAGA
TCTACATGGTGGCCGACGCCTCGGGCGGCACGTCCAAGGAAGCGCACGACTACGCGATGCAGCGCCTGATCCAGGCCGGC
GCGGTGCCGGTGACCTGGCAGCAGGTGCTGCTCGAATGGCAGCGCGACTGGGCCCGCCGCGACACCTATGACGCCGTGAT
GCAACTGGTGAAGGAACATTCGGGCGCCTACGGCATGGGTGTCGACTACGCCTACACCATGGTGCACAAGGCGCCGCAGC
GCACCGCATCGCAGCACAAGGCGCTGGCCGCCGTGGCCGCCGGCTGA

Upstream 100 bases:

>100_bases
TTCCTATCATTGACAGGCCGCCCACCGCAGCCGGAGCCATCGTTCCGGCTGCGCGGCGGCGCTCCTCATTCGGCGCCAAG
CCCCTCAACCGGATACAGCG

Downstream 100 bases:

>100_bases
GGCGGCTCCGGGGTCATCTTCGCCAACGCGCTCGCGGTACCGCGCCGCGAGCGCTTCCGTGTCACGGCCAAGGAGTCCGC
TTGAAGCCTTATCTGATCTC

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSNPKLEVLTPQNCQLIFIDHQPQMAFGVQSIDRQVLKNNTVGLAKAARIFDIPTTITTVETEGFSGYTYPELLDVFPGK
ELLERTSMNSWDDQKVRDVLARNGRKKVVVSGLWTEVCNTTFALCAMAEGGYEIYMVADASGGTSKEAHDYAMQRLIQAG
AVPVTWQQVLLEWQRDWARRDTYDAVMQLVKEHSGAYGMGVDYAYTMVHKAPQRTASQHKALAAVAAG

Sequences:

>Translated_228_residues
MSNPKLEVLTPQNCQLIFIDHQPQMAFGVQSIDRQVLKNNTVGLAKAARIFDIPTTITTVETEGFSGYTYPELLDVFPGK
ELLERTSMNSWDDQKVRDVLARNGRKKVVVSGLWTEVCNTTFALCAMAEGGYEIYMVADASGGTSKEAHDYAMQRLIQAG
AVPVTWQQVLLEWQRDWARRDTYDAVMQLVKEHSGAYGMGVDYAYTMVHKAPQRTASQHKALAAVAAG
>Mature_227_residues
SNPKLEVLTPQNCQLIFIDHQPQMAFGVQSIDRQVLKNNTVGLAKAARIFDIPTTITTVETEGFSGYTYPELLDVFPGKE
LLERTSMNSWDDQKVRDVLARNGRKKVVVSGLWTEVCNTTFALCAMAEGGYEIYMVADASGGTSKEAHDYAMQRLIQAGA
VPVTWQQVLLEWQRDWARRDTYDAVMQLVKEHSGAYGMGVDYAYTMVHKAPQRTASQHKALAAVAAG

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=198, Percent_Identity=32.3232323232323, Blast_Score=107, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25338; Mature: 25207

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPKLEVLTPQNCQLIFIDHQPQMAFGVQSIDRQVLKNNTVGLAKAARIFDIPTTITTV
CCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHEEECCCEEEEE
ETEGFSGYTYPELLDVFPGKELLERTSMNSWDDQKVRDVLARNGRKKVVVSGLWTEVCNT
ECCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHH
TFALCAMAEGGYEIYMVADASGGTSKEAHDYAMQRLIQAGAVPVTWQQVLLEWQRDWARR
HHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
DTYDAVMQLVKEHSGAYGMGVDYAYTMVHKAPQRTASQHKALAAVAAG
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNPKLEVLTPQNCQLIFIDHQPQMAFGVQSIDRQVLKNNTVGLAKAARIFDIPTTITTV
CCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHEEECCCEEEEE
ETEGFSGYTYPELLDVFPGKELLERTSMNSWDDQKVRDVLARNGRKKVVVSGLWTEVCNT
ECCCCCCCCHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHH
TFALCAMAEGGYEIYMVADASGGTSKEAHDYAMQRLIQAGAVPVTWQQVLLEWQRDWARR
HHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
DTYDAVMQLVKEHSGAYGMGVDYAYTMVHKAPQRTASQHKALAAVAAG
CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]