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The map label for this gene is yodB [H]

Identifier: 17544918

GI number: 17544918

Start: 221044

End: 221568

Strand: Reverse

Name: yodB [H]

Synonym: RSc0199

Alternate gene names: 17544918

Gene position: 221568-221044 (Counterclockwise)

Preceding gene: 17544924

Following gene: 17544917

Centisome position: 5.96

GC content: 63.24

Gene sequence:

>525_bases
GTGCGCTTCGAACCGAAGTATTCCCTGGGTATGCGAGCCTTGCATTGGCTGGTGTTCCTGGCGGCATTGATCGCAGTGGT
CACCATCGAGATCCTCGACGCCTTCCCCAAAGGCAGCGCTGCGCGCGCCGCCTTATTCGCGGCTCACCAGACAATGGGGC
TGTCCGTGCTCGCTCTGATGGTACTGCGCATGCTTGTTCGCGTGGGAGGGCAGGTACCCGCGCCGGTCTCCGGCTCCCAG
CTACTGGAGCGTGCCGCGCGACTCACGCACGGCGTGCTGTACGTGCTGATGGTCGGTATGCCGATCCTCGGCGTTCTGGC
GATTGCCTGGAGCGGCAAGCCAATTCAACCATTTGGCCTGGCCTTGACGCTCACCCTTGCGCAGGACAAGACCCTGGCGA
ACCTTGCCAAGGAGGTTCACGAGTCGGGGGCGACGCTGGTCTACATCTTCGTTGGGCTGCATGCGGCCGCGGCGCTCTGG
CATGAGTTCATCCTCAAAGACCGCCTGCTGCGCCGCATGATCTAG

Upstream 100 bases:

>100_bases
TCAGCCAGGAATAGCCTCTTTACTGAGCGCGACGTGCGCGCACAATAGAGCAGCATGGCACGGGCCGTGATTCCTTAACT
GCTCATTTCATGGGGGCTTT

Downstream 100 bases:

>100_bases
CGCAATGTCGGCAGGGAGGCTTGACGCCATGGTGAATCTGCTCGGTTTGTTCGGTACGGTCTTCGTACTGAATGTGATAC
CAGCGTTCGCCCCGCCGACC

Product: cytochrome B561 cytochrome transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MRFEPKYSLGMRALHWLVFLAALIAVVTIEILDAFPKGSAARAALFAAHQTMGLSVLALMVLRMLVRVGGQVPAPVSGSQ
LLERAARLTHGVLYVLMVGMPILGVLAIAWSGKPIQPFGLALTLTLAQDKTLANLAKEVHESGATLVYIFVGLHAAAALW
HEFILKDRLLRRMI

Sequences:

>Translated_174_residues
MRFEPKYSLGMRALHWLVFLAALIAVVTIEILDAFPKGSAARAALFAAHQTMGLSVLALMVLRMLVRVGGQVPAPVSGSQ
LLERAARLTHGVLYVLMVGMPILGVLAIAWSGKPIQPFGLALTLTLAQDKTLANLAKEVHESGATLVYIFVGLHAAAALW
HEFILKDRLLRRMI
>Mature_174_residues
MRFEPKYSLGMRALHWLVFLAALIAVVTIEILDAFPKGSAARAALFAAHQTMGLSVLALMVLRMLVRVGGQVPAPVSGSQ
LLERAARLTHGVLYVLMVGMPILGVLAIAWSGKPIQPFGLALTLTLAQDKTLANLAKEVHESGATLVYIFVGLHAAAALW
HEFILKDRLLRRMI

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=170, Percent_Identity=30.5882352941176, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787296, Length=173, Percent_Identity=31.2138728323699, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 18874; Mature: 18874

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFEPKYSLGMRALHWLVFLAALIAVVTIEILDAFPKGSAARAALFAAHQTMGLSVLALM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VLRMLVRVGGQVPAPVSGSQLLERAARLTHGVLYVLMVGMPILGVLAIAWSGKPIQPFGL
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
ALTLTLAQDKTLANLAKEVHESGATLVYIFVGLHAAAALWHEFILKDRLLRRMI
HEEEEHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRFEPKYSLGMRALHWLVFLAALIAVVTIEILDAFPKGSAARAALFAAHQTMGLSVLALM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VLRMLVRVGGQVPAPVSGSQLLERAARLTHGVLYVLMVGMPILGVLAIAWSGKPIQPFGL
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
ALTLTLAQDKTLANLAKEVHESGATLVYIFVGLHAAAALWHEFILKDRLLRRMI
HEEEEHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]