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The map label for this gene is 17544837

Identifier: 17544837

GI number: 17544837

Start: 140557

End: 141078

Strand: Direct

Name: 17544837

Synonym: RSc0118

Alternate gene names: NA

Gene position: 140557-141078 (Clockwise)

Preceding gene: 17544836

Following gene: 17544838

Centisome position: 3.78

GC content: 68.39

Gene sequence:

>522_bases
ATGTCAGATCAATTCATCGGCGAGATCCGGATTTTCGGCTTCAATTTCGCCCCCGTGGACTGGGCGGCCTGCGATGGCGC
GCTGATGCCGATTTCGCAGAACGCCGCGCTGTTCTCCATTCTCGGCGCCACGTATGGCGGCAACGGCTCCACGACCTTCG
GCCTGCCCGACCTGCGCGGCCGCGCGGTGATGGGGCCGGTGGGCGGCGCGCTGAATGACCAGCAGGGCGCGGCGACCATT
TCGCTGCAGCAGGGTGAAATGCCCATGCATACGCACACCGCGTATGGGAACAACGCCCGGGCGGCGTCTACGGCGGCGGC
GGGCCGGTTGCCGGCGCGCTTCATGGTGGCGCACAACCAGTCGTTCATTGCCACGGACGCGACGCCGGCGCCCGTCATGA
CCACACTGGCACCGCAGACCGTCGGCCCGGCCGGCGGCAGCACCGCGCACGAGAACTGCCAGCCCTACCTGGCTGTGAAC
TACTGCATCGCGCTGCAGGGCGCCTGGCCTCCCCATCCCTGA

Upstream 100 bases:

>100_bases
CCAACCTGCCGCACTCGAACCACATGCCGACCGCGTCCATCAACTACATCATCGCCATCACGGGCATCTACCCGTCGCAG
AGCTGAACAGGGGGAGACAC

Downstream 100 bases:

>100_bases
GCCCGGCTGTCCTGTTCCGAGCGGGCGGCGCCGTGCCGTCCGCGTCCGCTTTCCGCATGCGATCCGCCGCTTCCATGACC
GTTTCCGCCGAGCTGTTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: Phage Tail Collar; Phage Tail Collar Domain-Containing Protein; Tail Collar Domain-Containing Protein; Microcystin Dependent Protein; Microcystin-Dependent Protein; Phage Tail Collar Domain Protein; Phage Tail Collar Domain Family; Microcystin Dependent Protein MdpB; Microcystin Dependent; Phenylacrylic Acid Decarboxylase; Cell Wall/Surface Repeat Protein

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSDQFIGEIRIFGFNFAPVDWAACDGALMPISQNAALFSILGATYGGNGSTTFGLPDLRGRAVMGPVGGALNDQQGAATI
SLQQGEMPMHTHTAYGNNARAASTAAAGRLPARFMVAHNQSFIATDATPAPVMTTLAPQTVGPAGGSTAHENCQPYLAVN
YCIALQGAWPPHP

Sequences:

>Translated_173_residues
MSDQFIGEIRIFGFNFAPVDWAACDGALMPISQNAALFSILGATYGGNGSTTFGLPDLRGRAVMGPVGGALNDQQGAATI
SLQQGEMPMHTHTAYGNNARAASTAAAGRLPARFMVAHNQSFIATDATPAPVMTTLAPQTVGPAGGSTAHENCQPYLAVN
YCIALQGAWPPHP
>Mature_172_residues
SDQFIGEIRIFGFNFAPVDWAACDGALMPISQNAALFSILGATYGGNGSTTFGLPDLRGRAVMGPVGGALNDQQGAATIS
LQQGEMPMHTHTAYGNNARAASTAAAGRLPARFMVAHNQSFIATDATPAPVMTTLAPQTVGPAGGSTAHENCQPYLAVNY
CIALQGAWPPHP

Specific function: Unknown

COG id: COG4675

COG function: function code S; Microcystin-dependent protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17874; Mature: 17743

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQFIGEIRIFGFNFAPVDWAACDGALMPISQNAALFSILGATYGGNGSTTFGLPDLRG
CCCCCEEEEEEEEECCCCCCHHCCCCEEEECCCCCEEEEEEHHEECCCCCEEECCCCCCC
RAVMGPVGGALNDQQGAATISLQQGEMPMHTHTAYGNNARAASTAAAGRLPARFMVAHNQ
CEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCCEEEEEEECC
SFIATDATPAPVMTTLAPQTVGPAGGSTAHENCQPYLAVNYCIALQGAWPPHP
EEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
>Mature Secondary Structure 
SDQFIGEIRIFGFNFAPVDWAACDGALMPISQNAALFSILGATYGGNGSTTFGLPDLRG
CCCCEEEEEEEEECCCCCCHHCCCCEEEECCCCCEEEEEEHHEECCCCCEEECCCCCCC
RAVMGPVGGALNDQQGAATISLQQGEMPMHTHTAYGNNARAASTAAAGRLPARFMVAHNQ
CEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCCEEEEEEECC
SFIATDATPAPVMTTLAPQTVGPAGGSTAHENCQPYLAVNYCIALQGAWPPHP
EEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA