Click here to switch to the map view.

The map label for this gene is 17544836

Identifier: 17544836

GI number: 17544836

Start: 140009

End: 140542

Strand: Direct

Name: 17544836

Synonym: RSc0117

Alternate gene names: NA

Gene position: 140009-140542 (Clockwise)

Preceding gene: 17544835

Following gene: 17544837

Centisome position: 3.77

GC content: 67.79

Gene sequence:

>534_bases
ATGGAACCCTTCATCGGCGAGATTCGCCTGTTTGCCGGCAACTATGCCCCGCAGGGCTGGCTGCTGTGCCAAGGCCAACT
GATCGACATTTCCAGCAACGAGATCCTCTACGCGCTGCTCGGCACCACCTACGGCGGCGACGGCCGGACAACGTTCGCGC
TGCCCAACCTGCAGGGCGCGCTGCCGGTCGGCCAGGGACAGGGCCCCGGCTTGACCGCCCGCACCATCGGCCAGCACCTG
GGCGTGGAAAACGTGACGCTCACCCAGGCCCAGATGCCGGCGCACAGCCACGCCCTGTTCGCGACCAGCGATACGGCGAC
CACCATCACGCCGGGCCCCGGCGCGATGCTCGCCACCGTGCCGAATCCGCAGGGCTTCTACGATGCCGGTACGGCCAATC
CGCCGACCAAGGCGGCGTTTTCCAGCCAGGCCGTCGGCGTGGCCGGCGCCAACCTGCCGCACTCGAACCACATGCCGACC
GCGTCCATCAACTACATCATCGCCATCACGGGCATCTACCCGTCGCAGAGCTGA

Upstream 100 bases:

>100_bases
GGGCGGCGCGCAGCCGCACGAGAACATGCAGCCGTCGCTGGTGCTGAACTACATCATCGCGCTGACCGGCATTTTCCCGT
CGCGCAACTGAGGACGCATC

Downstream 100 bases:

>100_bases
ACAGGGGGAGACACATGTCAGATCAATTCATCGGCGAGATCCGGATTTTCGGCTTCAATTTCGCCCCCGTGGACTGGGCG
GCCTGCGATGGCGCGCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: Phage Tail Collar; Phage Tail Collar Domain-Containing Protein; Tail Collar Domain-Containing Protein; Microcystin Dependent Protein; Microcystin-Dependent Protein; Phage Tail Collar Domain Protein; Phage Tail Collar Domain Family; Microcystin Dependent Protein MdpB; Microcystin Dependent; Phenylacrylic Acid Decarboxylase; Cell Wall/Surface Repeat Protein; Microcystin-Dependent Protein-Like Protein

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MEPFIGEIRLFAGNYAPQGWLLCQGQLIDISSNEILYALLGTTYGGDGRTTFALPNLQGALPVGQGQGPGLTARTIGQHL
GVENVTLTQAQMPAHSHALFATSDTATTITPGPGAMLATVPNPQGFYDAGTANPPTKAAFSSQAVGVAGANLPHSNHMPT
ASINYIIAITGIYPSQS

Sequences:

>Translated_177_residues
MEPFIGEIRLFAGNYAPQGWLLCQGQLIDISSNEILYALLGTTYGGDGRTTFALPNLQGALPVGQGQGPGLTARTIGQHL
GVENVTLTQAQMPAHSHALFATSDTATTITPGPGAMLATVPNPQGFYDAGTANPPTKAAFSSQAVGVAGANLPHSNHMPT
ASINYIIAITGIYPSQS
>Mature_177_residues
MEPFIGEIRLFAGNYAPQGWLLCQGQLIDISSNEILYALLGTTYGGDGRTTFALPNLQGALPVGQGQGPGLTARTIGQHL
GVENVTLTQAQMPAHSHALFATSDTATTITPGPGAMLATVPNPQGFYDAGTANPPTKAAFSSQAVGVAGANLPHSNHMPT
ASINYIIAITGIYPSQS

Specific function: Unknown

COG id: COG4675

COG function: function code S; Microcystin-dependent protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18248; Mature: 18248

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPFIGEIRLFAGNYAPQGWLLCQGQLIDISSNEILYALLGTTYGGDGRTTFALPNLQGA
CCCCCCEEEEEECCCCCCCEEEECCEEEEECCCCEEEEEEECEECCCCEEEEECCCCCCC
LPVGQGQGPGLTARTIGQHLGVENVTLTQAQMPAHSHALFATSDTATTITPGPGAMLATV
CCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCEEECCCCCEEEEEC
PNPQGFYDAGTANPPTKAAFSSQAVGVAGANLPHSNHMPTASINYIIAITGIYPSQS
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEECCCCC
>Mature Secondary Structure
MEPFIGEIRLFAGNYAPQGWLLCQGQLIDISSNEILYALLGTTYGGDGRTTFALPNLQGA
CCCCCCEEEEEECCCCCCCEEEECCEEEEECCCCEEEEEEECEECCCCEEEEECCCCCCC
LPVGQGQGPGLTARTIGQHLGVENVTLTQAQMPAHSHALFATSDTATTITPGPGAMLATV
CCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCEEECCCCCEEEEEC
PNPQGFYDAGTANPPTKAAFSSQAVGVAGANLPHSNHMPTASINYIIAITGIYPSQS
CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA