| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is ntrY [H]
Identifier: 17544796
GI number: 17544796
Start: 87475
End: 89910
Strand: Direct
Name: ntrY [H]
Synonym: RSc0077
Alternate gene names: 17544796
Gene position: 87475-89910 (Clockwise)
Preceding gene: 17544795
Following gene: 17544797
Centisome position: 2.35
GC content: 68.47
Gene sequence:
>2436_bases ATGATCTTCGATCGCAGCTACAAGCGCCTGCTGTACCAGGTGGTGGCCGGCACCATCGTCTTCCTGGCGATCGTGCTGGT CGGCCTGCTGGCGGCCGCCTCGGCCAATACCGAGTTCTTCGATCGCTACTTCACCCTGCTCTACAAGGTCAACCTCGTCA TCGGCGTGCTGCTGGTGGTGATCATCGGTGGGCTGATGCTGGCGCTGGCGCTGCGCGCGCGCCGCGGTAAGTTCGGCACG CGGCTGATGACCAAGCTGGCGGTGTTCTTCGGCGTGGTGGGTGTGCTGCCGGGCGTGCTGATCTACCTGGTGTCGCTGCA GTTCGTCTCGCGCAGCATCGAGTCGTGGTTCGACGTGAAGGTGGAGTCGGCGCTCGAGGCGGGCCTGAATCTCGGGCGCA CCACCATGGACGCATCGCTGGCGGAGCTGCAGAACAAGGGCCGCCTGATCGCCGAGCAGCTTGGCGATGGCTCGATGTCG GCCACCGCCATCACGCTGAACCGGCTGCGCGAGCAATTCGGCGTGCAGGAGGCGACCATCTTCACCGGCAGCGGCCGCGT GGTGGCGACGTCGTCGAACACGTATGACACGCTCGTGCCGGAGTTTCCCAGCCAGGCCGTGCTGGAGCAGGCGCGCACGC CGGGCGGCTATGCCAGCCTGGAAGGCGGCAGCGACAGCGCGGCCGACGGCGAAGCCGCTTCGGCGCCCGCTGCGCGCGCG GGCGGCCGCCGCAGCGATCTGTACCAGCTCCGGGTGGTGCTGGCGCTCGGAACCATGGCGCGCGACGATGCCGCGCTCAC GCCCCATACGCCGGTGCGCAAGTGGGCTGGCTCGGGTCTGCTGGCCGATCGCCGTTCGGACGACAGCAGCACGCGCGGCT TCGGCCTGATCGGCGAGGCCGGGCGCGAGGAGCGCTTCCTGCAGCTGGTGCAGCCGGTGCCGCAGGCGCTCGCGCGCAAC GCCGACGCCGTGCAGCGGGCCTACCAGGAATACCAGGAGAAGGCGCTCGGCCGCACCGGCCTGCGCAAGATGTACATCGG GACGCTGACGCTGACGCTGTTCCTCGCGGTGTTCATTGCGGTGATGCTGGCGCTGCTGCTCGGCGCGCAGCTGGCGCGTC CGCTGCTGATGCTGCTGCAGGGCACGCGCGAGGTGGCCGAGGGCGACCTGTCGCCCAAGCGCGAGCTCCACACGCGCGAC GAGCTCGGCCTGCTGACCCAGCAGTTCAACCAGATGACGCGCCAACTGGCCGATGCGCGCCGCGCCGTGGAGCAGAATCG CGCGGCGCTCGAGCAGTCGAAGGCCTATCTCGAGAGCGTCCTGACCAACCTGACGGCCGGCGTGTTCGTGTTCGATCACC GCTTGGTGCTGCTGACCGCCAACCCCGGCGCCGAGCGCATCTTCAAGCAGCCGTTTGGCGCGTGGGTCGGCCAGTCCCTG TCCGGCATCACGCCGCTGCAGGCGTTTGCCGGCACGCTCGAGCATGCCTTCGCCGAGCACGATGTGAGTGCCGCGGCCGG CGGCGCGGCGGCCCACTGGCAGAAGCAGGTGGAGATTCCGCTGGCGGACGAGGACGAACCCCTCACCCTGCTGGTGCGCG GCACGCGGCTGCTGGGGCCGTCGGTGGACGCGCGCGGTACGGAGCGCGGCTACGTGGTGGTGTTCGACGACATCTCCGAC GTGATCTCGGCGCAGCGCTCGGTCGCCTGGGGCGAAGTGGCCCGGCGGCTCGCGCACGAGATCAAGAATCCGCTCACGCC GATCCAGCTCTCCGCCGAGCGCCTGGAGATGAAGCTCTCTCCCAAGCTGACGGACGCCGATGCCGAGGTGCTGCGGCGCG GCGCGACCACCATCGTCAACCAGGTCGCGGCGATGAAGCGCATGGTCGACGACTTCCGCGACTATGCGCGCACGCCGCCG GCCGTGCTGCAGGACCTCGATCTGAACGCGCTGTGTACCGAGGTGCTGCACCTGTACGGCATCGATCACCCGGGCCAGAG CGATCACGCCGTCATCGCGGTCAGGCTGGGCGAAGGCCTGCCGCTCATCAAGGGCGACCCGACGCAGTTGCGGCAGGTCA TCCACAACCTGCTGCAGAACGCGCAGGACGCCGTCGCCGACAACGAAGCGGCCGGGCGCCCCGCTGCGCATGTCATGTTG CAAACTGACACGGTAGAATACGACGACGCCTCGGGCGCGCGGCGGCAGGCGGTCCGGCTCGGCATCGCGGATAACGGGAC GGGTTTCTCATCCCGCATCCTCAACCGTGCATTCGAGCCGTACGTGACGACCAAAGCCAAGGGCACTGGATTGGGCTTGG CCATGGTGAAGAAGATCATGGACGAGCACGGGGCGCGCATTGAATTGCGCAACCGCCAGTCGGGCACCGACACCGTCGGC GCCCAGGTTTCCATTCTGTTCGTAAAACTTGCCTAG
Upstream 100 bases:
>100_bases CTCCCGCGTCCGGCACGCTGGGCCTGTCGCCCAATCCGGGCTGGGGCATGGGCGCGGGGTCGGGCAACAATGCGGCATCG CTGCTGCTGGCCCCAGCCAA
Downstream 100 bases:
>100_bases CGCGGTAGGCGATCCCGCCGCACATAGAGGAAAAGCATGGCCACCATCCTCGTTGTCGACGACGAAATGGGTATCCGGGA GTTGCTCTCCGAAATTCTCG
Product: two component sensor histidine kinase transcription regulator protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 811; Mature: 811
Protein sequence:
>811_residues MIFDRSYKRLLYQVVAGTIVFLAIVLVGLLAAASANTEFFDRYFTLLYKVNLVIGVLLVVIIGGLMLALALRARRGKFGT RLMTKLAVFFGVVGVLPGVLIYLVSLQFVSRSIESWFDVKVESALEAGLNLGRTTMDASLAELQNKGRLIAEQLGDGSMS ATAITLNRLREQFGVQEATIFTGSGRVVATSSNTYDTLVPEFPSQAVLEQARTPGGYASLEGGSDSAADGEAASAPAARA GGRRSDLYQLRVVLALGTMARDDAALTPHTPVRKWAGSGLLADRRSDDSSTRGFGLIGEAGREERFLQLVQPVPQALARN ADAVQRAYQEYQEKALGRTGLRKMYIGTLTLTLFLAVFIAVMLALLLGAQLARPLLMLLQGTREVAEGDLSPKRELHTRD ELGLLTQQFNQMTRQLADARRAVEQNRAALEQSKAYLESVLTNLTAGVFVFDHRLVLLTANPGAERIFKQPFGAWVGQSL SGITPLQAFAGTLEHAFAEHDVSAAAGGAAAHWQKQVEIPLADEDEPLTLLVRGTRLLGPSVDARGTERGYVVVFDDISD VISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLEMKLSPKLTDADAEVLRRGATTIVNQVAAMKRMVDDFRDYARTPP AVLQDLDLNALCTEVLHLYGIDHPGQSDHAVIAVRLGEGLPLIKGDPTQLRQVIHNLLQNAQDAVADNEAAGRPAAHVML QTDTVEYDDASGARRQAVRLGIADNGTGFSSRILNRAFEPYVTTKAKGTGLGLAMVKKIMDEHGARIELRNRQSGTDTVG AQVSILFVKLA
Sequences:
>Translated_811_residues MIFDRSYKRLLYQVVAGTIVFLAIVLVGLLAAASANTEFFDRYFTLLYKVNLVIGVLLVVIIGGLMLALALRARRGKFGT RLMTKLAVFFGVVGVLPGVLIYLVSLQFVSRSIESWFDVKVESALEAGLNLGRTTMDASLAELQNKGRLIAEQLGDGSMS ATAITLNRLREQFGVQEATIFTGSGRVVATSSNTYDTLVPEFPSQAVLEQARTPGGYASLEGGSDSAADGEAASAPAARA GGRRSDLYQLRVVLALGTMARDDAALTPHTPVRKWAGSGLLADRRSDDSSTRGFGLIGEAGREERFLQLVQPVPQALARN ADAVQRAYQEYQEKALGRTGLRKMYIGTLTLTLFLAVFIAVMLALLLGAQLARPLLMLLQGTREVAEGDLSPKRELHTRD ELGLLTQQFNQMTRQLADARRAVEQNRAALEQSKAYLESVLTNLTAGVFVFDHRLVLLTANPGAERIFKQPFGAWVGQSL SGITPLQAFAGTLEHAFAEHDVSAAAGGAAAHWQKQVEIPLADEDEPLTLLVRGTRLLGPSVDARGTERGYVVVFDDISD VISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLEMKLSPKLTDADAEVLRRGATTIVNQVAAMKRMVDDFRDYARTPP AVLQDLDLNALCTEVLHLYGIDHPGQSDHAVIAVRLGEGLPLIKGDPTQLRQVIHNLLQNAQDAVADNEAAGRPAAHVML QTDTVEYDDASGARRQAVRLGIADNGTGFSSRILNRAFEPYVTTKAKGTGLGLAMVKKIMDEHGARIELRNRQSGTDTVG AQVSILFVKLA >Mature_811_residues MIFDRSYKRLLYQVVAGTIVFLAIVLVGLLAAASANTEFFDRYFTLLYKVNLVIGVLLVVIIGGLMLALALRARRGKFGT RLMTKLAVFFGVVGVLPGVLIYLVSLQFVSRSIESWFDVKVESALEAGLNLGRTTMDASLAELQNKGRLIAEQLGDGSMS ATAITLNRLREQFGVQEATIFTGSGRVVATSSNTYDTLVPEFPSQAVLEQARTPGGYASLEGGSDSAADGEAASAPAARA GGRRSDLYQLRVVLALGTMARDDAALTPHTPVRKWAGSGLLADRRSDDSSTRGFGLIGEAGREERFLQLVQPVPQALARN ADAVQRAYQEYQEKALGRTGLRKMYIGTLTLTLFLAVFIAVMLALLLGAQLARPLLMLLQGTREVAEGDLSPKRELHTRD ELGLLTQQFNQMTRQLADARRAVEQNRAALEQSKAYLESVLTNLTAGVFVFDHRLVLLTANPGAERIFKQPFGAWVGQSL SGITPLQAFAGTLEHAFAEHDVSAAAGGAAAHWQKQVEIPLADEDEPLTLLVRGTRLLGPSVDARGTERGYVVVFDDISD VISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLEMKLSPKLTDADAEVLRRGATTIVNQVAAMKRMVDDFRDYARTPP AVLQDLDLNALCTEVLHLYGIDHPGQSDHAVIAVRLGEGLPLIKGDPTQLRQVIHNLLQNAQDAVADNEAAGRPAAHVML QTDTVEYDDASGARRQAVRLGIADNGTGFSSRILNRAFEPYVTTKAKGTGLGLAMVKKIMDEHGARIELRNRQSGTDTVG AQVSILFVKLA
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=409, Percent_Identity=25.9168704156479, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1790436, Length=234, Percent_Identity=30.3418803418803, Blast_Score=92, Evalue=9e-20, Organism=Escherichia coli, GI1790300, Length=360, Percent_Identity=25.2777777777778, Blast_Score=84, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 87793; Mature: 87793
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFDRSYKRLLYQVVAGTIVFLAIVLVGLLAAASANTEFFDRYFTLLYKVNLVIGVLLVV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH IIGGLMLALALRARRGKFGTRLMTKLAVFFGVVGVLPGVLIYLVSLQFVSRSIESWFDVK HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VESALEAGLNLGRTTMDASLAELQNKGRLIAEQLGDGSMSATAITLNRLREQFGVQEATI HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEE FTGSGRVVATSSNTYDTLVPEFPSQAVLEQARTPGGYASLEGGSDSAADGEAASAPAARA EECCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHC GGRRSDLYQLRVVLALGTMARDDAALTPHTPVRKWAGSGLLADRRSDDSSTRGFGLIGEA CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC GREERFLQLVQPVPQALARNADAVQRAYQEYQEKALGRTGLRKMYIGTLTLTLFLAVFIA CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMLALLLGAQLARPLLMLLQGTREVAEGDLSPKRELHTRDELGLLTQQFNQMTRQLADAR HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH RAVEQNRAALEQSKAYLESVLTNLTAGVFVFDHRLVLLTANPGAERIFKQPFGAWVGQSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEEECCCCHHHHHHHHHHHHHCCCC SGITPLQAFAGTLEHAFAEHDVSAAAGGAAAHWQKQVEIPLADEDEPLTLLVRGTRLLGP CCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEEECCHHCCC SVDARGTERGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLEMKLS CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHCCC PKLTDADAEVLRRGATTIVNQVAAMKRMVDDFRDYARTPPAVLQDLDLNALCTEVLHLYG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHC IDHPGQSDHAVIAVRLGEGLPLIKGDPTQLRQVIHNLLQNAQDAVADNEAAGRPAAHVML CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEE QTDTVEYDDASGARRQAVRLGIADNGTGFSSRILNRAFEPYVTTKAKGTGLGLAMVKKIM EECCCCCCCCCCHHHHHHEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHH DEHGARIELRNRQSGTDTVGAQVSILFVKLA HHCCCEEEECCCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MIFDRSYKRLLYQVVAGTIVFLAIVLVGLLAAASANTEFFDRYFTLLYKVNLVIGVLLVV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH IIGGLMLALALRARRGKFGTRLMTKLAVFFGVVGVLPGVLIYLVSLQFVSRSIESWFDVK HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VESALEAGLNLGRTTMDASLAELQNKGRLIAEQLGDGSMSATAITLNRLREQFGVQEATI HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEE FTGSGRVVATSSNTYDTLVPEFPSQAVLEQARTPGGYASLEGGSDSAADGEAASAPAARA EECCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHHC GGRRSDLYQLRVVLALGTMARDDAALTPHTPVRKWAGSGLLADRRSDDSSTRGFGLIGEA CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC GREERFLQLVQPVPQALARNADAVQRAYQEYQEKALGRTGLRKMYIGTLTLTLFLAVFIA CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMLALLLGAQLARPLLMLLQGTREVAEGDLSPKRELHTRDELGLLTQQFNQMTRQLADAR HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH RAVEQNRAALEQSKAYLESVLTNLTAGVFVFDHRLVLLTANPGAERIFKQPFGAWVGQSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEEECCCCHHHHHHHHHHHHHCCCC SGITPLQAFAGTLEHAFAEHDVSAAAGGAAAHWQKQVEIPLADEDEPLTLLVRGTRLLGP CCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHCCCCCCCCCCCEEEEEECCHHCCC SVDARGTERGYVVVFDDISDVISAQRSVAWGEVARRLAHEIKNPLTPIQLSAERLEMKLS CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHCCC PKLTDADAEVLRRGATTIVNQVAAMKRMVDDFRDYARTPPAVLQDLDLNALCTEVLHLYG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHC IDHPGQSDHAVIAVRLGEGLPLIKGDPTQLRQVIHNLLQNAQDAVADNEAAGRPAAHVML CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEE QTDTVEYDDASGARRQAVRLGIADNGTGFSSRILNRAFEPYVTTKAKGTGLGLAMVKKIM EECCCCCCCCCCHHHHHHEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHH DEHGARIELRNRQSGTDTVGAQVSILFVKLA HHCCCEEEECCCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]